Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006430

Physical Location & Seq

Genomic Coordinates Forward (+)

47823308 .. 47837457

Gene Structure 14150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG225600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGACCTGATGGTGGCGAATTTCAACGACGTCGGAACCAAGCACGACCTCCCAATGGGCCTGACGGAGAACGACTCTGCCATGTTTCTCTCCATCGGCAACCCCTGCCTCGATCTCTTCTTCCACATCATCCCTAACACTCCAGGCGACTACCTCACCGATGGGACTCCAATGGTGGCCAGTGTCGTGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGTCTTGGACAATTTGATTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCTGCAGCAGCGGAAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCGAAATCTTGCAAAGCTTCTGCGATAGCATCTGGAGCTGTTTTGGGTATATATGAAGACAATAGGTATAAATCTGAGTCAAAGAAATCAGCTCTTAAGTCTGTGGACATTCTTGGTCTTGGAACTGGCCTGAACTTGAGAAGAAGCTCAACAACTACAAAGTACAGCGTCTTTACTTTTTTGCCGAAAGGAATCTTTGAACAGGTTGGAGTGGTGTCGAAGAGTGAGGCTATTCGAATGGTCGATGAGGCAGACCTTGATTTGAATACAATTAAGAGACAGAGAAACATGATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

216

Amino Acids

22.82

Weight (kDa)

5.44

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	64 - 143	1.5e-13	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006430)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065551 RchiOBHm_Chr7g0210331
rosa_laevigata	RLG00000013135
rosa_multiflora	Rmu_sc0000573.1_g000032 Rmu_sc0002482.1_g000022 Rmu_sc0002853.1_g000007 Rmu_sc0004465.1_g000025 Rmu_sc0008877.1_g000005 Rmu_sc0012973.1_g000003 Rmu_sc0025057.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086520 Rroxscaffold_3G00227130 Rroxscaffold_5G00377700
rosa_rugosa	Rorug01G0061800
rosa_samantha	Rh1AG059300 Rh1AG069300 Rh1AG241800 Rh1BG052700 Rh1CG225600 Rh1CG299900 Rh2BG263100 Rh2CG584100 Rh3BG245100 Rh4BG041800 Rh5AG536800 Rh6AG270100 Rh6BG090500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	248
AciI	CCGC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	4 cut(s)	13, 55, 200, 342
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	25, 551, 616
AjnI	CCWGG	2 cut(s)	142, 193
AluBI	AGCT	5 cut(s)	257, 368, 389, 443, 498
AluI	AGCT	5 cut(s)	257, 368, 389, 443, 498
Alw26I	GTCTC	1 cut(s)	622
AoxI	GGCC	3 cut(s)	58, 177, 478
ApeKI	GCWGC	4 cut(s)	278, 281, 284, 287
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	4, 58
AsuHPI	GGTGA	1 cut(s)	148
AsuII	TTCGAA	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	265, 268, 296, 299
BccI	CCATC	3 cut(s)	4, 101, 155
BciT130I	CCWGG	2 cut(s)	144, 195
BcoDI	GTCTC	1 cut(s)	622
BfmI	CTRYAG	2 cut(s)	249, 282
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	4 cut(s)	279, 282, 285, 288
BlsI	GCNGC	4 cut(s)	280, 283, 286, 289
Bme1390I	CCNGG	2 cut(s)	144, 195
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 58
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	144, 195
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	2 cut(s)	126, 405
Bpu14I	TTCGAA	1 cut(s)	586
BpuEI	CTTGAG	2 cut(s)	288, 508
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 55, 200, 342
Bse1I	ACTGG	2 cut(s)	180, 481
BseBI	CCWGG	2 cut(s)	144, 195
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	4 cut(s)	13, 55, 200, 342
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	180, 481
BseXI	GCAGC	4 cut(s)	265, 268, 296, 299
BshFI	GGCC	3 cut(s)	60, 179, 480
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	4 cut(s)	13, 55, 200, 342
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	60, 179, 480
Bsp119I	TTCGAA	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	3 cut(s)	60, 179, 480
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	586
BspTI	CTTAAG	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	180, 481
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	144, 195
Bst6I	CTCTTC	3 cut(s)	122, 203, 566
BstACI	GRCGYC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	446
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 284, 287, 386
BstNI	CCWGG	2 cut(s)	144, 195
BstSCI	CCNGG	2 cut(s)	142, 193
BstSFI	CTRYAG	2 cut(s)	249, 282
BstV1I	GCAGC	4 cut(s)	265, 268, 296, 299
BstV2I	GAAGAC	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	60, 179, 480
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	4, 58
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	2 cut(s)	82, 640
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	3 cut(s)	122, 203, 566
EarI	CTCTTC	3 cut(s)	122, 203, 566
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	142, 193
FaeI	CATG	2 cut(s)	85, 643
FaiI	YATR	6 cut(s)	83, 401, 403, 405, 420, 641
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	81, 639
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	4 cut(s)	279, 282, 285, 288
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	4 cut(s)	279, 282, 285, 288
GluI	GCNGC	4 cut(s)	279, 282, 285, 288
GsuI	CTGGAG	2 cut(s)	126, 405
HaeIII	GGCC	3 cut(s)	60, 179, 480
HgaI	GACGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	85, 643
HindIII	AAGCTT	2 cut(s)	255, 366
HinfI	GANTC	5 cut(s)	74, 166, 242, 428, 543
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	249, 457
Hpy188I	TCNGA	3 cut(s)	35, 340, 427
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	249, 457
Hpy99I	CGWCG	2 cut(s)	32, 35
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	284, 363
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 284, 287, 386
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	85, 643
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	4 cut(s)	265, 268, 296, 299
LweI	GCATC	1 cut(s)	389
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	109, 112, 220, 419, 504, 583
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	3 cut(s)	19, 236, 621
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	3 cut(s)	68, 160, 437
MmeI	TCCRAC	2 cut(s)	13, 538
MnlI	CCTC	9 cut(s)	59, 119, 164, 204, 268, 334, 346, 571, 592
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	3 cut(s)	261, 447, 624
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	144, 195
MvaI	CCWGG	2 cut(s)	144, 195
MwoI	GCNNNNNNNGC	4 cut(s)	105, 284, 287, 386
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	85, 643
NlaIV	GGNNCC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	242, 543
PkrI	GCNGC	4 cut(s)	280, 283, 286, 289
PleI	GAGTC	3 cut(s)	68, 160, 436
PpsI	GAGTC	3 cut(s)	68, 160, 436
Psp6I	CCWGG	2 cut(s)	142, 193
PspGI	CCWGG	2 cut(s)	142, 193
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	4, 58
PstI	CTGCAG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	261, 447, 624
SatI	GCNGC	4 cut(s)	279, 282, 285, 288
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	2 cut(s)	4, 58
SchI	GAGTC	3 cut(s)	68, 160, 437
ScrFI	CCNGG	2 cut(s)	144, 195
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	2 cut(s)	249, 282
SfuI	TTCGAA	1 cut(s)	586
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	3 cut(s)	303, 446, 487
SmoI	CTYRAG	3 cut(s)	303, 446, 487
Sse9I	AATT	3 cut(s)	19, 236, 621
SsiI	CCGC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	142, 193
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	111, 206, 569, 586, 594
TasI	AATT	3 cut(s)	19, 236, 621
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	2 cut(s)	242, 543
Tru1I	TTAA	3 cut(s)	261, 447, 624
Tru9I	TTAA	3 cut(s)	261, 447, 624
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	4 cut(s)	278, 281, 284, 287
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	248
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.