Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012973.1

Orthogroup ID

OG0006430

Physical Location & Seq

Genomic Coordinates Reverse (-)

12504 .. 14564

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012973.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggacgcagattttgtgctagacatcgcgatcagagactgggtcctgatcccttggtggtcatggtcttcaatttcgaaccctaaccagttgagaaaaagctccaatggcaactcgattgagctcagattgggatcacaattcgagatagctgaaatcatgagacagcagaactgggacaaatggataccaaactgtcctatatatctacaacgcccaacaggtactgaatttgaaagggttgttgatctcattgaccctaatcaacgtacatggatccctgctactatgaggacactttttagccttgagattgcagacaagatacttactattcccttaagcaggttcctcccgagttccacaaaccctcacccaccaccacagctccgcgcgccaccccaacccaaatccaaacccgactccaaacccaccactggcgaacccttcgtggacctgatggtggcgaatgtcaacgacgtcggaaccaagcacgacctcctaatgggcctgatggagaatgactctgccacgtttctctccaccggcaactcctgcctagatctcttcttccacatcatcccaaacactccaggcgactacctcaccgatgggactccaatggcggccagtgtcgtgtcattggcttcttcctttatcgcaatcacttcatcttcttcaccttcatattcttcttcgtttttaacgaaactaaggcacgcgctgagtctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

244

Amino Acids

27.2

Weight (kDa)

5.33

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006430)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065551 RchiOBHm_Chr7g0210331
rosa_laevigata	RLG00000013135
rosa_multiflora	Rmu_sc0000573.1_g000032 Rmu_sc0002482.1_g000022 Rmu_sc0002853.1_g000007 Rmu_sc0004465.1_g000025 Rmu_sc0008877.1_g000005 Rmu_sc0012973.1_g000003 Rmu_sc0025057.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086520 Rroxscaffold_3G00227130 Rroxscaffold_5G00377700
rosa_rugosa	Rorug01G0061800
rosa_samantha	Rh1AG059300 Rh1AG069300 Rh1AG241800 Rh1BG052700 Rh1CG225600 Rh1CG299900 Rh2BG263100 Rh2CG584100 Rh3BG245100 Rh4BG041800 Rh5AG536800 Rh6AG270100 Rh6BG090500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	336
AccII	CGCG	4 cut(s)	29, 393, 395, 722
AciI	CCGC	2 cut(s)	391, 626
AclWI	GGATC	4 cut(s)	43, 142, 271, 284
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	2 cut(s)	226, 271
AfiI	CCNNNNNNNGG	4 cut(s)	345, 437, 463, 505
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	72, 236
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	4 cut(s)	102, 124, 152, 388
AluI	AGCT	4 cut(s)	102, 124, 152, 388
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	30, 157
AlwI	GGATC	4 cut(s)	43, 142, 271, 284
AlwNI	CAGNNNCTG	2 cut(s)	39, 227
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	508, 627
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspLEI	GCGC	3 cut(s)	395, 397, 724
AspS9I	GGNCC	3 cut(s)	43, 454, 508
AsuHPI	GGTGA	3 cut(s)	365, 598, 672
AsuII	TTCGAA	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	43, 454
BamHI	GGATCC	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	3 cut(s)	454, 508, 605
BciT130I	CCWGG	1 cut(s)	594
BciVI	GTATCC	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	30, 157
BfaI	CTAG	2 cut(s)	20, 560
BfrI	CTTAAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	180
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	2 cut(s)	43, 454
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	43, 454, 508
BmiI	GGNNCC	4 cut(s)	44, 278, 350, 487
BmrFI	CCNGG	1 cut(s)	594
BmrI	ACTGGG	2 cut(s)	49, 184
BmuI	ACTGGG	2 cut(s)	49, 184
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	345, 437, 463, 505
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	5 cut(s)	44, 88, 179, 442, 630
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	579
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	4 cut(s)	345, 437, 463, 505
BseMII	CTCAG	2 cut(s)	139, 716
BseNI	ACTGG	5 cut(s)	44, 88, 179, 442, 630
BsePI	GCGCGC	1 cut(s)	393
Bsh1236I	CGCG	4 cut(s)	29, 393, 395, 722
BshFI	GGCC	2 cut(s)	510, 629
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	546
BslFI	GGGAC	2 cut(s)	191, 628
BslI	CCNNNNNNNGG	4 cut(s)	345, 437, 463, 505
BsmAI	GTCTC	2 cut(s)	30, 157
BsmFI	GGGAC	2 cut(s)	191, 628
BsnI	GGCC	2 cut(s)	510, 629
BsoBI	CYCGRG	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	2 cut(s)	391, 626
BspANI	GGCC	2 cut(s)	510, 629
BspCNI	CTCAG	2 cut(s)	138, 717
BspFNI	CGCG	4 cut(s)	29, 393, 395, 722
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	4 cut(s)	44, 278, 350, 487
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	4 cut(s)	43, 142, 271, 284
BspT104I	TTCGAA	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	5 cut(s)	44, 88, 179, 442, 630
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	53
BssHII	GCGCGC	1 cut(s)	393
BssMI	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	572
BstACI	GRCGYC	1 cut(s)	480
BstAFI	CTTAAG	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	395, 720
BstDEI	CTNAG	3 cut(s)	125, 713, 725
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	4 cut(s)	29, 393, 395, 722
BstHHI	GCGC	3 cut(s)	395, 397, 724
BstKTI	GATC	6 cut(s)	33, 51, 137, 250, 279, 565
BstMAI	GTCTC	2 cut(s)	30, 157
BstMBI	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 394, 555
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	592
BstUI	CGCG	4 cut(s)	29, 393, 395, 722
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	276, 562
BstYI	RGATCY	2 cut(s)	276, 562
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	510, 629
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	435, 637
BtuMI	TCGCGA	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	395, 720
CaiI	CAGNNNCTG	2 cut(s)	39, 227
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	3 cut(s)	395, 397, 724
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	3 cut(s)	43, 454, 508
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	225, 270
CviAII	CATG	3 cut(s)	63, 160, 273
CviJI	RGCY	8 cut(s)	102, 124, 152, 306, 388, 510, 629, 647
CviKI_1	RGCY	8 cut(s)	102, 124, 152, 306, 388, 510, 629, 647
CviQI	GTAC	2 cut(s)	225, 270
DdeI	CTNAG	3 cut(s)	125, 713, 725
DpnI	GATC	6 cut(s)	32, 50, 136, 249, 278, 564
DpnII	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	43, 454
Eco53kI	GAGCTC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	66, 163, 276
FaiI	YATR	7 cut(s)	64, 161, 203, 205, 274, 290, 688
FaqI	GGGAC	2 cut(s)	191, 628
FatI	CATG	3 cut(s)	62, 159, 272
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	20, 560
GlaI	GCGC	3 cut(s)	394, 396, 723
GluI	GCNGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	510, 629
HapII	CCGG	1 cut(s)	546
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	3 cut(s)	395, 397, 724
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	66, 163, 276
Hin6I	GCGC	3 cut(s)	393, 395, 722
HinP1I	GCGC	3 cut(s)	393, 395, 722
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	4 cut(s)	422, 524, 616, 727
HpaII	CCGG	1 cut(s)	546
HphI	GGTGA	3 cut(s)	365, 598, 672
Hpy166II	GTNNAC	2 cut(s)	454, 475
Hpy188I	TCNGA	3 cut(s)	35, 128, 485
Hpy188III	TCNNGA	5 cut(s)	28, 46, 145, 160, 355
Hpy8I	GTNNAC	2 cut(s)	454, 475
Hpy99I	CGWCG	2 cut(s)	482, 485
HpyAV	CCTTC	2 cut(s)	457, 693
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	3 cut(s)	268, 480, 533
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 394, 555
HpyF3I	CTNAG	3 cut(s)	125, 713, 725
HpySE526I	ACGT	3 cut(s)	268, 480, 533
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	66, 163, 276
HspAI	GCGC	3 cut(s)	393, 395, 722
Kzo9I	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
LmnI	GCTCC	2 cut(s)	107, 393
MaeI	CTAG	2 cut(s)	20, 560
MaeII	ACGT	3 cut(s)	268, 480, 533
MalI	GATC	6 cut(s)	32, 50, 136, 249, 278, 564
MboI	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
MboII	GAAGA	8 cut(s)	60, 559, 562, 642, 666, 669, 684, 687
MflI	RGATCY	2 cut(s)	276, 562
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	72, 140, 230
MlyI	GAGTC	3 cut(s)	416, 518, 610
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	5 cut(s)	285, 362, 381, 509, 614
MseI	TTAA	2 cut(s)	341, 704
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	1 cut(s)	546
MspR9I	CCNGG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	4 cut(s)	29, 393, 395, 722
MwoI	GCNNNNNNNGC	3 cut(s)	108, 394, 555
NdeII	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
NlaIII	CATG	3 cut(s)	66, 163, 276
NlaIV	GGNNCC	4 cut(s)	44, 278, 350, 487
NruI	TCGCGA	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	77
PagI	TCATGA	1 cut(s)	159
PauI	GCGCGC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	704
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	3 cut(s)	416, 518, 610
PpsI	GAGTC	3 cut(s)	416, 518, 610
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	4 cut(s)	44, 278, 350, 487
PspPI	GGNCC	3 cut(s)	43, 454, 508
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	2 cut(s)	39, 227
PsuI	RGATCY	2 cut(s)	276, 562
PsyI	GACNNNGTC	1 cut(s)	41
PteI	GCGCGC	1 cut(s)	393
RruI	TCGCGA	1 cut(s)	29
RsaI	GTAC	2 cut(s)	226, 271
RsaNI	GTAC	2 cut(s)	225, 270
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	341, 704
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	6 cut(s)	30, 48, 134, 247, 276, 562
Sau96I	GGNCC	3 cut(s)	43, 454, 508
SchI	GAGTC	3 cut(s)	416, 518, 610
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	2 cut(s)	43, 454
SmlI	CTYRAG	2 cut(s)	308, 340
SmoI	CTYRAG	2 cut(s)	308, 340
Sse9I	AATT	3 cut(s)	72, 140, 230
SsiI	CCGC	2 cut(s)	391, 626
SspMI	CTAG	2 cut(s)	20, 560
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	3 cut(s)	271, 483, 536
TaqI	TCGA	3 cut(s)	77, 116, 144
TasI	AATT	3 cut(s)	72, 140, 230
TauI	GCSGC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	341, 704
Tru9I	TTAA	2 cut(s)	341, 704
TscAI	CASTG	2 cut(s)	442, 637
TspDTI	ATGAA	2 cut(s)	660, 675
TspRI	CASTG	2 cut(s)	442, 637
Tth111I	GACNNNGTC	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	43, 454
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	2 cut(s)	20, 560
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.