Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006430

Physical Location & Seq

Genomic Coordinates Reverse (-)

92254642 .. 92258366

Gene Structure 3725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG536800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 941 bp

ATGGTGGCGAATTTCAACGACGTCGGAACCAAGCACGACCTCCCAATGGGCCTGACGGAGAACGACTCTGCCATGTTTCTCTCCACCGGCAACCCCTGCCTCGATCTGTTCTTCCACATCATCCCGAACACTCCAAACGACTACCTCACCGATGGGACTCCAATGGTGGCCAGTGTCGTGTCATTGGCTTCTTCCTTTATCGATGGCAGTCACTTTATCTTCTTGACCTTCATATTCTTCTTCGTTTTTAACGAAACTAAGGCACGCACCGAGTCTGTGACTTTGTTTTGCAGTCTCGCCCTTGAGAGGGAAGAAGCTAGCACATGGCTCACACAATTGCTCGCGCCACTCTGGGCCTCACTCAGATTTCTCCAGTCTTTGAAGCCCCAAAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATTTGATTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCTGCAGCAGCGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGAGGGGCTTTCTGCTAAATCTTGCAAAGCTTCTACGATATCATCTGGTTCAACTGTTCAAGTTATGGTGATAGTTGTTATAAACATTGTGGAATTGCTCGACTTGTTGAACTGGCCTGAACTTGAGAAGAAGCTCAAGTATGCTCAAGATGTTGCTTCTGGAATAATATTTGGGAAAGAGCTCATGAATTCACCTGCCAATGTTCTCACACCTGCAACTACAAAGTACAGCGTCTTTACTTTTTTGCCGAAAAGAATCTTTGAACAGGTTGGAGTGGTGTCGAAGAGTGAGGCTATTCGAATGGTCGATGAGGCAGACCTTGATTTGATCAAAGTTTCAAACTCTGCACTTATTAGTGCATTTATGATGGAGTTGGAAGCTGAACACCTGTTATCCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

313

Amino Acids

33.91

Weight (kDa)

4.93

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	125 - 191	2.9e-06	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006430)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065551 RchiOBHm_Chr7g0210331
rosa_laevigata	RLG00000013135
rosa_multiflora	Rmu_sc0000573.1_g000032 Rmu_sc0002482.1_g000022 Rmu_sc0002853.1_g000007 Rmu_sc0004465.1_g000025 Rmu_sc0008877.1_g000005 Rmu_sc0012973.1_g000003 Rmu_sc0025057.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086520 Rroxscaffold_3G00227130 Rroxscaffold_5G00377700
rosa_rugosa	Rorug01G0061800
rosa_samantha	Rh1AG059300 Rh1AG069300 Rh1AG241800 Rh1BG052700 Rh1CG225600 Rh1CG299900 Rh2BG263100 Rh2CG584100 Rh3BG245100 Rh4BG041800 Rh5AG536800 Rh6AG270100 Rh6BG090500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AarI	CACCTGC	2 cut(s)	745, 763
AatII	GACGTC	1 cut(s)	24
Acc36I	ACCTGC	2 cut(s)	745, 763
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	1 cut(s)	344
AciI	CCGC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	10, 730
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	770
AfiI	CCNNNNNNNGG	5 cut(s)	46, 306, 307, 404, 546
AgsI	TTSAA	7 cut(s)	16, 382, 594, 602, 652, 806, 882
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	6 cut(s)	317, 461, 572, 676, 724, 923
AluI	AGCT	6 cut(s)	317, 461, 572, 676, 724, 923
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	4 cut(s)	49, 168, 354, 656
ApeKI	GCWGC	4 cut(s)	482, 485, 488, 491
ApoI	RAATTY	2 cut(s)	10, 730
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	49, 354
AsuHPI	GGTGA	3 cut(s)	139, 622, 726
AsuII	TTCGAA	1 cut(s)	841
AsuNHI	GCTAGC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	726
BbvI	GCAGC	4 cut(s)	469, 472, 500, 503
BccI	CCATC	3 cut(s)	146, 197, 904
BciT130I	CCWGG	1 cut(s)	399
BclI	TGATCA	1 cut(s)	870
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	2 cut(s)	453, 486
BfuAI	ACCTGC	2 cut(s)	745, 763
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	5 cut(s)	483, 486, 489, 492, 495
BlsI	GCNGC	5 cut(s)	484, 487, 490, 493, 496
Bme1390I	CCNGG	1 cut(s)	399
BmgT120I	GGNCC	2 cut(s)	49, 354
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	399
BmtI	GCTAGC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	356
Bpu14I	TTCGAA	1 cut(s)	841
BpuEI	CTTGAG	5 cut(s)	323, 492, 662, 672, 686
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 306, 307, 404, 546
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	171, 373, 659
BseBI	CCWGG	1 cut(s)	399
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	5 cut(s)	46, 306, 307, 404, 546
BseMII	CTCAG	1 cut(s)	376
BseNI	ACTGG	3 cut(s)	171, 373, 659
BseXI	GCAGC	4 cut(s)	469, 472, 500, 503
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	4 cut(s)	51, 170, 356, 658
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	5 cut(s)	46, 306, 307, 404, 546
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	51, 170, 356, 658
Bsp119I	TTCGAA	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp143I	GATC	2 cut(s)	103, 870
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	4 cut(s)	51, 170, 356, 658
BspCNI	CTCAG	1 cut(s)	375
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	2 cut(s)	745, 763
BspOI	GCTAGC	1 cut(s)	321
BspT104I	TTCGAA	1 cut(s)	841
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	171, 373, 659
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	2 cut(s)	103, 870
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	2 cut(s)	407, 821
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	2 cut(s)	96, 503
BstBI	TTCGAA	1 cut(s)	841
BstC8I	GCNNGC	4 cut(s)	265, 319, 342, 534
BstDEI	CTNAG	2 cut(s)	258, 362
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	106, 873
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	2 cut(s)	103, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 391, 488, 491, 494, 503
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	453, 486
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	469, 472, 500, 503
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	51, 170, 356, 658
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	2 cut(s)	745, 763
Cac8I	GCNNGC	4 cut(s)	265, 319, 342, 534
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	49, 354
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	1 cut(s)	769
CviAII	CATG	3 cut(s)	73, 324, 727
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	2 cut(s)	258, 362
DpnI	GATC	2 cut(s)	105, 872
DpnII	GATC	2 cut(s)	103, 870
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	407, 821
EarI	CTCTTC	2 cut(s)	407, 821
Ecl136II	GAGCTC	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	726
Eco32I	GATATC	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	724
EcoICRI	GAGCTC	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	726
FaeI	CATG	3 cut(s)	76, 327, 730
FaiI	YATR	8 cut(s)	74, 233, 325, 608, 623, 684, 728, 908
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	72, 323, 726
FbaI	TGATCA	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	5 cut(s)	483, 486, 489, 492, 495
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	5 cut(s)	483, 486, 489, 492, 495
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	5 cut(s)	483, 486, 489, 492, 495
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	51, 170, 356, 658
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	76, 327, 730
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HindIII	AAGCTT	2 cut(s)	459, 570
HinfI	GANTC	5 cut(s)	65, 157, 272, 446, 798
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	3 cut(s)	139, 622, 726
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	3 cut(s)	26, 365, 544
Hpy188III	TCNNGA	5 cut(s)	124, 223, 689, 702, 727
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	291, 488, 567, 758, 890, 902
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 391, 488, 491, 494, 503
HpyF3I	CTNAG	2 cut(s)	258, 362
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	76, 327, 730
HspAI	GCGC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	870
Kzo9I	GATC	2 cut(s)	103, 870
Lsp1109I	GCAGC	4 cut(s)	469, 472, 500, 503
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	209, 277
MalI	GATC	2 cut(s)	105, 872
MboI	GATC	2 cut(s)	103, 870
MboII	GAAGA	9 cut(s)	103, 183, 211, 229, 232, 323, 424, 682, 838
MfeI	CAATTG	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	726
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	5 cut(s)	10, 335, 440, 635, 730
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	3 cut(s)	59, 151, 281
MmeI	TCCRAC	3 cut(s)	4, 793, 897
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	2 cut(s)	249, 465
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	6 cut(s)	96, 391, 488, 491, 494, 503
NdeII	GATC	2 cut(s)	103, 870
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	76, 327, 730
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	209, 277
NspV	TTCGAA	1 cut(s)	841
PagI	TCATGA	1 cut(s)	726
PaqCI	CACCTGC	2 cut(s)	745, 763
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	446, 798
PkrI	GCNGC	5 cut(s)	484, 487, 490, 493, 496
PleI	GAGTC	3 cut(s)	59, 151, 280
PpsI	GAGTC	3 cut(s)	59, 151, 280
PsiI	TTATAA	1 cut(s)	623
Psp124BI	GAGCTC	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	49, 354
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
SacI	GAGCTC	1 cut(s)	726
SaqAI	TTAA	2 cut(s)	249, 465
SatI	GCNGC	5 cut(s)	483, 486, 489, 492, 495
Sau3AI	GATC	2 cut(s)	103, 870
Sau96I	GGNCC	2 cut(s)	49, 354
SchI	GAGTC	3 cut(s)	59, 151, 281
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	726
SfcI	CTRYAG	2 cut(s)	453, 486
SfuI	TTCGAA	1 cut(s)	841
SmlI	CTYRAG	5 cut(s)	302, 507, 665, 677, 687
SmoI	CTYRAG	5 cut(s)	302, 507, 665, 677, 687
Sse9I	AATT	5 cut(s)	10, 335, 440, 635, 730
SsiI	CCGC	1 cut(s)	494
SspI	AATATT	1 cut(s)	711
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	726
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	7 cut(s)	102, 201, 410, 642, 824, 841, 849
TasI	AATT	5 cut(s)	10, 335, 440, 635, 730
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	446, 798
Tru1I	TTAA	2 cut(s)	249, 465
Tru9I	TTAA	2 cut(s)	249, 465
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	209, 277
TseI	GCWGC	4 cut(s)	482, 485, 488, 491
Tsp45I	GTSAC	2 cut(s)	209, 277
TspDTI	ATGAA	2 cut(s)	220, 743
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	2 cut(s)	10, 730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	1 cut(s)	318
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.