Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006430

Physical Location & Seq

Genomic Coordinates Forward (+)

23216057 .. 23216332

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG245100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTGGCGAATTTCAACGACGTTGGAACCAAGCACAACCTCCCAATGGGCCTAACGGAGAACGACTCTGCCACGTTTCTCTCCACCGGCAACCCCTACCTTGATCTCTTCTTCCACATCATCCCAAACACTCCAGGCGACTACCTTACCTATGGGACTCCAATGGTGGCCAGTGTCGTGTCATTGGCTTCTTCCTTTATCGCAATCACTTCATCTTCTTCACATTCATATTCTTCTTCGTTTTTAACAAAACTAAGGCACGCGCCGAGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

91

Amino Acids

9.77

Weight (kDa)

5.98

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006430)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065551 RchiOBHm_Chr7g0210331
rosa_laevigata	RLG00000013135
rosa_multiflora	Rmu_sc0000573.1_g000032 Rmu_sc0002482.1_g000022 Rmu_sc0002853.1_g000007 Rmu_sc0004465.1_g000025 Rmu_sc0008877.1_g000005 Rmu_sc0012973.1_g000003 Rmu_sc0025057.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086520 Rroxscaffold_3G00227130 Rroxscaffold_5G00377700
rosa_rugosa	Rorug01G0061800
rosa_samantha	Rh1AG059300 Rh1AG069300 Rh1AG241800 Rh1BG052700 Rh1CG225600 Rh1CG299900 Rh2BG263100 Rh2CG584100 Rh3BG245100 Rh4BG041800 Rh5AG536800 Rh6AG270100 Rh6BG090500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	49, 168
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	51, 170
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	51, 170
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	51, 170
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	51, 170
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	49
CviJI	RGCY	3 cut(s)	51, 170, 188
CviKI_1	RGCY	3 cut(s)	51, 170, 188
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	133
FaiI	YATR	2 cut(s)	153, 229
FaqI	GGGAC	1 cut(s)	169
FokI	GGATG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	51, 170
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	65, 157, 268
HpaII	CCGG	1 cut(s)	87
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4IV	ACGT	2 cut(s)	21, 74
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	2 cut(s)	21, 74
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	100, 120, 147, 184
MaeII	ACGT	2 cut(s)	21, 74
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	7 cut(s)	100, 103, 183, 207, 210, 225, 228
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	1 cut(s)	10
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	59, 151
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	1 cut(s)	50
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	263
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	28
PleI	GAGTC	2 cut(s)	59, 151
PpsI	GAGTC	2 cut(s)	59, 151
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	59, 151
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	6 cut(s)	24, 42, 77, 102, 147, 152
SgeI	CNNG	9 cut(s)	43, 85, 99, 113, 146, 147, 183, 190, 272
Sse9I	AATT	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	2 cut(s)	24, 77
TasI	AATT	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	201, 216
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.