Rh1CG299900

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006430
Physical Location & Seq
Forward (+)
57444900 .. 57457930
13031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG299900.1

Sequence Viewer

Length: 372 bp
ATGGTGGCGAATTTCAACAACGTCGGAACCAAGCACGACCTCCCAATGGGCCTGACGGAGAACGACTCTGCCACTTTTCTCTCCACCGGAAACCCCTGCCTCGATCTCTTCTTCCACGTCATCCCAAACACTCCAGGCGACTACCTCACGTTCTCACCGATGGGACTCCAATGGGCATTCGCCAATTTGGTAGAAGAGAGTGTTGCGATCAAATGCACAGTTTTGAGGGACGTAGTTTTCAAAGAGGGAAGAAGGGATGTTGATGTAGGCTCGGGCACCACATTACTATCAATGTTCTTGATTCGAACATACTCCAAAGTCAAAGTCGTAATAGACTTCGCTTCGAGGAAGGTCGTTCGGGACAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

123

Amino Acids

13.68

Weight (kDa)

6.71

Isoelectric Point (pI)

24.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 19 - 49 1e-05 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 16, 241
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 147
AsuII TTCGAA 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 275
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 28, 277
BmrFI CCNGG 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 120, 262
BseLI CCNNNNNNNGG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 278
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 2 cut(s) 177, 242
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 177, 242
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 304
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 103, 207
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 28, 277
BspT104I TTCGAA 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 275
BssMI GATC 2 cut(s) 103, 207
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 113, 189
BstBI TTCGAA 1 cut(s) 304
BstF5I GGATG 2 cut(s) 120, 262
BstKTI GATC 2 cut(s) 106, 210
BstMBI GATC 2 cut(s) 103, 207
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 51
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 120, 262
Cfr13I GGNCC 1 cut(s) 49
CviJI RGCY 2 cut(s) 51, 270
CviKI_1 RGCY 2 cut(s) 51, 270
DpnI GATC 2 cut(s) 105, 209
DpnII GATC 2 cut(s) 103, 207
Eam1104I CTCTTC 2 cut(s) 113, 189
EarI CTCTTC 2 cut(s) 113, 189
Eco88I CYCGRG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 133
FaiI YATR 1 cut(s) 310
FaqI GGGAC 2 cut(s) 177, 242
FokI GGATG 2 cut(s) 107, 269
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 87
HinfI GANTC 3 cut(s) 65, 165, 301
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 2 cut(s) 298, 359
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 246, 343
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 4 cut(s) 21, 117, 149, 231
HpyCH4V TGCA 1 cut(s) 216
HpySE526I ACGT 4 cut(s) 21, 117, 149, 231
Kzo9I GATC 2 cut(s) 103, 207
LpnPI CCDG 5 cut(s) 65, 100, 109, 120, 147
MaeII ACGT 4 cut(s) 21, 117, 149, 231
MalI GATC 2 cut(s) 105, 209
MboI GATC 2 cut(s) 103, 207
MboII GAAGA 4 cut(s) 100, 103, 206, 261
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 2 cut(s) 10, 184
MlyI GAGTC 2 cut(s) 59, 159
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 6 cut(s) 50, 110, 155, 219, 238, 339
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 135
NdeII GATC 2 cut(s) 103, 207
NlaIV GGNNCC 2 cut(s) 28, 277
NspV TTCGAA 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 301
PleI GAGTC 2 cut(s) 59, 159
PpsI GAGTC 2 cut(s) 59, 159
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 28, 277
PspPI GGNCC 1 cut(s) 49
Sau3AI GATC 2 cut(s) 103, 207
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 2 cut(s) 59, 159
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 278
SetI ASST 7 cut(s) 24, 42, 120, 147, 152, 234, 354
SfuI TTCGAA 1 cut(s) 304
Sse9I AATT 2 cut(s) 10, 184
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 4 cut(s) 24, 120, 152, 234
TaqI TCGA 3 cut(s) 102, 304, 344
TasI AATT 2 cut(s) 10, 184
TfiI GAWTC 1 cut(s) 301
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.