Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006430

Physical Location & Seq

Genomic Coordinates Forward (+)

14242885 .. 14253700

Gene Structure 10816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTCCTCCCAGTATTCTCGGTCCTCCGGAGTTCCACAAACCCTCACCCACCACCACCGCTCCGCCGCCACCCCAACCCAAATCCAAACCCATCACCGGCGAACCTTTCGTGTACCTGATGGTGGCGAATTTCAACGACGTCGGAACCAAGCACGACCTCCCAATGGGCCTGACGGAGAACGACTCTGCCATGTTTCTCTCCACCGGCAACCCCTGCCTCAATCTCTTCTTCCACATCATCCCGAACACTCCAGGCGACTACCTCACCGATGGGACTCCAATGGTGGCCAGTCTGTCTGAGGAGGACTTCACACCAAAGTCTGGCCAGTCTACGGTTGTTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTAGCTTGTTTGGGCTTGGACAATTTGATTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCTGCAGCAGCGGCAAAGACTGCTCAAGCAAGTGATATTGCTATTGTGCTTGCTTCCTCGGATGGGCTTTCTGTGAAATCTTGCAAAGCTTCTGCGATACCATCTGGTTCAACTGTTCAAGTTATGAAGCTCAAGTATGATCAAGATGTTGCTTCTGGAATAATATTTGGGAAAGAGCTCACGAATTCACCTGCCAATGTTCTCACACCTGCAACTACAAAATACAGCGTCTTTACTTTTTTGCCGAAAGGAATCTTTGAACAGGTTGGAGTGGTATCGAAGAGTGAGGCTATTCGAATGGTCGATGAGGCAGACCTTGATTTGACGAAGGAGGCTGACAAGAGCCGAGGCCGGTCTGGTCCAAGGAACTGGCGGCGGAGCGAGGAAACCCAGATCGGGCGGCAGAGAAAGAGCAGGATCGCCTGCGTCTATCTCTGGTCGTTGGGCGACGGAGCTGGACGAAAGTTAGTTGCTAATGACGCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

307

Amino Acids

32.61

Weight (kDa)

7.67

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	97 - 177	1.1e-11	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006430)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065551 RchiOBHm_Chr7g0210331
rosa_laevigata	RLG00000013135
rosa_multiflora	Rmu_sc0000573.1_g000032 Rmu_sc0002482.1_g000022 Rmu_sc0002853.1_g000007 Rmu_sc0004465.1_g000025 Rmu_sc0008877.1_g000005 Rmu_sc0012973.1_g000003 Rmu_sc0025057.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086520 Rroxscaffold_3G00227130 Rroxscaffold_5G00377700
rosa_rugosa	Rorug01G0061800
rosa_samantha	Rh1AG059300 Rh1AG069300 Rh1AG241800 Rh1BG052700 Rh1CG225600 Rh1CG299900 Rh2BG263100 Rh2CG584100 Rh3BG245100 Rh4BG041800 Rh5AG536800 Rh6AG270100 Rh6BG090500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	634, 652
AatII	GACGTC	1 cut(s)	144
Acc36I	ACCTGC	2 cut(s)	634, 652
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	332, 404
AccII	CGCG	1 cut(s)	917
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	8 cut(s)	60, 65, 68, 446, 808, 811, 835, 917
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	2 cut(s)	288, 325
AcsI	RAATTY	2 cut(s)	130, 619
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	8 cut(s)	98, 124, 166, 323, 334, 356, 498, 831
AgsI	TTSAA	4 cut(s)	136, 546, 554, 695
AjnI	CCWGG	2 cut(s)	253, 349
AluBI	AGCT	6 cut(s)	375, 413, 524, 565, 613, 890
AluI	AGCT	6 cut(s)	375, 413, 524, 565, 613, 890
Alw21I	GWGCWC	1 cut(s)	615
AlwI	GGATC	1 cut(s)	860
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	4 cut(s)	169, 288, 325, 784
ApeKI	GCWGC	4 cut(s)	434, 437, 440, 443
ApoI	RAATTY	2 cut(s)	130, 619
AspS9I	GGNCC	3 cut(s)	23, 169, 794
AsuHPI	GGTGA	4 cut(s)	39, 88, 259, 615
AsuII	TTCGAA	1 cut(s)	730
AvaII	GGWCC	2 cut(s)	23, 794
BalI	TGGCCA	2 cut(s)	290, 327
BanII	GRGCYC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	4 cut(s)	421, 424, 452, 455
BccI	CCATC	5 cut(s)	101, 115, 266, 491, 544
BciT130I	CCWGG	2 cut(s)	255, 351
BclI	TGATCA	1 cut(s)	574
BfmI	CTRYAG	2 cut(s)	405, 438
BfuAI	ACCTGC	2 cut(s)	634, 652
BisI	GCNGC	8 cut(s)	68, 435, 438, 441, 444, 447, 809, 836
BlsI	GCNGC	8 cut(s)	69, 436, 439, 442, 445, 448, 810, 837
Bme1390I	CCNGG	2 cut(s)	255, 351
Bme18I	GGWCC	2 cut(s)	23, 794
BmgT120I	GGNCC	3 cut(s)	23, 169, 794
BmiI	GGNNCC	2 cut(s)	6, 148
BmrFI	CCNGG	2 cut(s)	255, 351
BmrI	ACTGGG	1 cut(s)	6
BmuI	ACTGGG	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	730
BpuEI	CTTGAG	2 cut(s)	444, 551
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	492, 781, 797
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	8 cut(s)	98, 124, 166, 323, 334, 356, 498, 831
Bse118I	RCCGGY	3 cut(s)	98, 206, 786
Bse1I	ACTGG	4 cut(s)	12, 291, 328, 809
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	2 cut(s)	255, 351
BseDI	CCNNGG	3 cut(s)	492, 781, 797
BseGI	GGATG	2 cut(s)	240, 502
BseLI	CCNNNNNNNGG	8 cut(s)	98, 124, 166, 323, 334, 356, 498, 831
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	4 cut(s)	12, 291, 328, 809
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	421, 424, 452, 455
Bsh1236I	CGCG	1 cut(s)	917
BshFI	GGCC	4 cut(s)	171, 290, 327, 786
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	4 cut(s)	29, 99, 207, 787
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	8 cut(s)	98, 124, 166, 323, 334, 356, 498, 831
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	4 cut(s)	171, 290, 327, 786
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	3 cut(s)	574, 828, 852
BspACI	CCGC	8 cut(s)	60, 65, 68, 446, 808, 811, 835, 917
BspANI	GGCC	4 cut(s)	171, 290, 327, 786
BspCNI	CTCAG	1 cut(s)	292
BspEI	TCCGGA	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	917
BspLI	GGNNCC	2 cut(s)	6, 148
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	2 cut(s)	634, 652
BspPI	GGATC	1 cut(s)	860
BspT104I	TTCGAA	1 cut(s)	730
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	3 cut(s)	98, 206, 786
BsrI	ACTGG	4 cut(s)	12, 291, 328, 809
BssAI	RCCGGY	3 cut(s)	98, 206, 786
BssECI	CCNNGG	3 cut(s)	492, 781, 797
BssMI	GATC	3 cut(s)	574, 828, 852
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	797
Bst2UI	CCWGG	2 cut(s)	255, 351
Bst4CI	ACNGT	2 cut(s)	337, 550
Bst6I	CTCTTC	3 cut(s)	233, 359, 710
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	2 cut(s)	216, 455
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	486, 859
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	240, 502
BstFNI	CGCG	1 cut(s)	917
BstKTI	GATC	3 cut(s)	577, 831, 855
BstMBI	GATC	3 cut(s)	574, 828, 852
BstMWI	GCNNNNNNNGC	6 cut(s)	216, 440, 443, 446, 455, 914
BstNI	CCWGG	2 cut(s)	255, 351
BstSCI	CCNGG	2 cut(s)	253, 349
BstSFI	CTRYAG	2 cut(s)	405, 438
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	4 cut(s)	421, 424, 452, 455
BstXI	CCANNNNNNTGG	1 cut(s)	804
BsuRI	GGCC	4 cut(s)	171, 290, 327, 786
BtsCI	GGATG	2 cut(s)	240, 502
BveI	ACCTGC	2 cut(s)	634, 652
Cac8I	GCNNGC	2 cut(s)	486, 859
Cfr10I	RCCGGY	3 cut(s)	98, 206, 786
Cfr13I	GGNCC	3 cut(s)	23, 169, 794
CseI	GACGC	2 cut(s)	652, 850
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	576, 830, 854
DpnII	GATC	3 cut(s)	574, 828, 852
EaeI	YGGCCR	2 cut(s)	288, 325
Eam1104I	CTCTTC	3 cut(s)	233, 359, 710
EarI	CTCTTC	3 cut(s)	233, 359, 710
EciI	GGCGGA	2 cut(s)	54, 826
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	797
Eco24I	GRGCYC	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	23, 794
Eco53kI	GAGCTC	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	253, 349
EcoT14I	CCWWGG	1 cut(s)	797
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	797
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	194, 560, 573
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	2 cut(s)	332, 404
Fnu4HI	GCNGC	8 cut(s)	68, 435, 438, 441, 444, 447, 809, 836
FokI	GGATG	2 cut(s)	227, 509
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	8 cut(s)	68, 435, 438, 441, 444, 447, 809, 836
GluI	GCNGC	8 cut(s)	68, 435, 438, 441, 444, 447, 809, 836
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	171, 290, 327, 786
HapII	CCGG	4 cut(s)	29, 99, 207, 787
HgaI	GACGC	2 cut(s)	652, 850
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	196
HindIII	AAGCTT	2 cut(s)	411, 522
HinfI	GANTC	4 cut(s)	185, 277, 398, 687
HpaII	CCGG	4 cut(s)	29, 99, 207, 787
HphI	GGTGA	4 cut(s)	39, 88, 259, 615
Hpy166II	GTNNAC	3 cut(s)	115, 333, 405
Hpy188I	TCNGA	3 cut(s)	146, 301, 496
Hpy188III	TCNNGA	5 cut(s)	29, 244, 578, 591, 616
Hpy8I	GTNNAC	3 cut(s)	115, 333, 405
Hpy99I	CGWCG	3 cut(s)	143, 146, 887
HpyAV	CCTTC	1 cut(s)	757
HpyCH4III	ACNGT	2 cut(s)	337, 550
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	440, 519, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	216, 440, 443, 446, 455, 914
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	574, 828, 852
LmnI	GCTCC	4 cut(s)	10, 67, 813, 887
Lsp1109I	GCAGC	4 cut(s)	421, 424, 452, 455
MaeII	ACGT	1 cut(s)	141
MalI	GATC	3 cut(s)	576, 830, 854
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	3 cut(s)	574, 828, 852
MboII	GAAGA	4 cut(s)	220, 223, 376, 727
MhlI	GDGCHC	1 cut(s)	615
MlsI	TGGCCA	2 cut(s)	290, 327
MluCI	AATT	3 cut(s)	130, 392, 619
MluNI	TGGCCA	2 cut(s)	290, 327
MlyI	GAGTC	2 cut(s)	179, 271
MmeI	TCCRAC	2 cut(s)	124, 682
Mox20I	TGGCCA	2 cut(s)	290, 327
MroI	TCCGGA	1 cut(s)	28
MscI	TGGCCA	2 cut(s)	290, 327
MseI	TTAA	2 cut(s)	417, 922
Msp20I	TGGCCA	2 cut(s)	290, 327
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	4 cut(s)	29, 99, 207, 787
MspR9I	CCNGG	2 cut(s)	255, 351
MvaI	CCWGG	2 cut(s)	255, 351
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	6 cut(s)	216, 440, 443, 446, 455, 914
NdeII	GATC	3 cut(s)	574, 828, 852
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	6, 148
NmeAIII	GCCGAG	1 cut(s)	806
NspV	TTCGAA	1 cut(s)	730
PaqCI	CACCTGC	2 cut(s)	634, 652
PfeI	GAWTC	2 cut(s)	398, 687
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	8 cut(s)	69, 436, 439, 442, 445, 448, 810, 837
PleI	GAGTC	2 cut(s)	179, 271
PpsI	GAGTC	2 cut(s)	179, 271
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	253, 349
PspGI	CCWGG	2 cut(s)	253, 349
PspN4I	GGNNCC	2 cut(s)	6, 148
PspPI	GGNCC	3 cut(s)	23, 169, 794
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	417, 922
SatI	GCNGC	8 cut(s)	68, 435, 438, 441, 444, 447, 809, 836
Sau3AI	GATC	3 cut(s)	574, 828, 852
Sau96I	GGNCC	3 cut(s)	23, 169, 794
SchI	GAGTC	2 cut(s)	179, 271
ScrFI	CCNGG	2 cut(s)	255, 351
SduI	GDGCHC	1 cut(s)	615
SfcI	CTRYAG	2 cut(s)	405, 438
SfuI	TTCGAA	1 cut(s)	730
SgrAI	CRCCGGYG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	23, 794
SmlI	CTYRAG	2 cut(s)	459, 566
SmoI	CTYRAG	2 cut(s)	459, 566
Sse9I	AATT	3 cut(s)	130, 392, 619
SsiI	CCGC	8 cut(s)	60, 65, 68, 446, 808, 811, 835, 917
SspI	AATATT	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	253, 349
StyI	CCWWGG	1 cut(s)	797
TaaI	ACNGT	2 cut(s)	337, 550
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	362, 713, 730, 738
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	130, 392, 619
TauI	GCSGC	4 cut(s)	70, 449, 811, 838
TfiI	GAWTC	2 cut(s)	398, 687
Tru1I	TTAA	2 cut(s)	417, 922
Tru9I	TTAA	2 cut(s)	417, 922
TseI	GCWGC	4 cut(s)	434, 437, 440, 443
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	2 cut(s)	191, 900
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	23, 794
XapI	RAATTY	2 cut(s)	130, 619
XmiI	GTMKAC	2 cut(s)	332, 404
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.