Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008877.1

Orthogroup ID

OG0006430

Physical Location & Seq

Genomic Coordinates Reverse (-)

32865 .. 34144

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008877.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggatattgcaatggccttgatgttggacatcacattcccatgtacaaacccaaatggtcttgcggaaacgactacgatgatagtccggacattgcgctctatgatgggtccttacagacaaatgggcaactacgttggatttgagactccagcaatcgtccgccacttaatgcccttgcaaggcgatctccttaccgctagatttgcgggttgtcactttgatgagacaccatggctcctcccagtattctcggtcctcccgagttccacaaaccctcacccaccaccaccgctccgcgtgccaccccaacccaaatccaaacccgactccaaacccaccaccggattatccttcgtggacctgatggtggcgaatttcaacgatgtccgaacccagcacgacctcccaatgggcctgacggagaacgactctgccacgtttctctccaccggcaacccctaccttgatctcttcttccacgtcatcccaaacactccaggcgactacctcacgtcctcaccgatgggactccaatggtggccaatgttgtgtcactggattcttcctttatcgcaatcacttcaccttcatattcttcttcgtttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

203

Amino Acids

22.76

Weight (kDa)

6.01

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006430)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065551 RchiOBHm_Chr7g0210331
rosa_laevigata	RLG00000013135
rosa_multiflora	Rmu_sc0000573.1_g000032 Rmu_sc0002482.1_g000022 Rmu_sc0002853.1_g000007 Rmu_sc0004465.1_g000025 Rmu_sc0008877.1_g000005 Rmu_sc0012973.1_g000003 Rmu_sc0025057.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086520 Rroxscaffold_3G00227130 Rroxscaffold_5G00377700
rosa_rugosa	Rorug01G0061800
rosa_samantha	Rh1AG059300 Rh1AG069300 Rh1AG241800 Rh1BG052700 Rh1CG225600 Rh1CG299900 Rh2BG263100 Rh2CG584100 Rh3BG245100 Rh4BG041800 Rh5AG536800 Rh6AG270100 Rh6BG090500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	1 cut(s)	300
AccIII	TCCGGA	1 cut(s)	87
AciI	CCGC	6 cut(s)	65, 163, 198, 209, 293, 298
AcoI	YGGCCR	1 cut(s)	542
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	4 cut(s)	182, 344, 370, 412
AgsI	TTSAA	1 cut(s)	382
AjiI	CACGTC	2 cut(s)	484, 516
AjnI	CCWGG	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	140, 221
Ama87I	CYCGRG	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	87
AoxI	GGCC	3 cut(s)	15, 415, 542
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	4 cut(s)	110, 256, 361, 415
AsuHPI	GGTGA	3 cut(s)	272, 513, 578
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	3 cut(s)	110, 256, 361
BalI	TGGCCA	1 cut(s)	544
BccI	CCATC	3 cut(s)	100, 361, 520
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	140, 221
BfaI	CTAG	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	3 cut(s)	110, 256, 361
BmeT110I	CYCGRG	1 cut(s)	262
BmgBI	CACGTC	2 cut(s)	484, 516
BmgT120I	GGNCC	4 cut(s)	110, 256, 361, 415
BmiI	GGNNCC	2 cut(s)	111, 239
BmrFI	CCNGG	1 cut(s)	501
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	2 cut(s)	135, 483
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	2 cut(s)	87, 344
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 279, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 344, 370, 412
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	245, 563
Bse3DI	GCAATG	2 cut(s)	18, 92
BseAI	TCCGGA	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	4 cut(s)	182, 344, 370, 412
BseMI	GCAATG	2 cut(s)	18, 92
BseNI	ACTGG	2 cut(s)	245, 563
BseRI	GAGGAG	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	17, 417, 544
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	88, 345, 453
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	4 cut(s)	182, 344, 370, 412
BsmAI	GTCTC	2 cut(s)	140, 221
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	3 cut(s)	17, 417, 544
BsoBI	CYCGRG	1 cut(s)	262
Bsp13I	TCCGGA	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	187, 469
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	6 cut(s)	65, 163, 198, 209, 293, 298
BspANI	GGCC	3 cut(s)	17, 417, 544
BspEI	TCCGGA	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	111, 239
BsrBI	CCGCTC	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	18, 92
BsrFI	RCCGGY	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	245, 563
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	2 cut(s)	187, 469
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	501
Bst6I	CTCTTC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	302
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	486
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	190, 472
BstMAI	GTCTC	2 cut(s)	140, 221
BstMBI	GATC	2 cut(s)	187, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 301
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	17, 417, 544
BtgI	CCRYGG	1 cut(s)	233
BtrI	CACGTC	2 cut(s)	484, 516
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	4 cut(s)	110, 256, 361, 415
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	2 cut(s)	42, 234
CviJI	RGCY	4 cut(s)	17, 238, 417, 544
CviKI_1	RGCY	4 cut(s)	17, 238, 417, 544
CviQI	GTAC	1 cut(s)	45
DpnI	GATC	2 cut(s)	189, 471
DpnII	GATC	2 cut(s)	187, 469
EaeI	YGGCCR	1 cut(s)	542
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	233
Eco47I	GGWCC	3 cut(s)	110, 256, 361
Eco88I	CYCGRG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	2 cut(s)	45, 237
FaiI	YATR	4 cut(s)	43, 104, 235, 594
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	2 cut(s)	41, 233
FauI	CCCGC	1 cut(s)	202
FokI	GGATG	1 cut(s)	473
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	400
GsuI	CTGGAG	2 cut(s)	135, 483
HaeIII	GGCC	3 cut(s)	17, 417, 544
HapII	CCGG	3 cut(s)	88, 345, 453
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	45, 237
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	5 cut(s)	148, 329, 431, 531, 562
HpaII	CCGG	3 cut(s)	88, 345, 453
HphI	GGTGA	3 cut(s)	272, 513, 578
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	2 cut(s)	88, 262
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	364, 599
HpyCH4IV	ACGT	4 cut(s)	135, 440, 483, 515
HpyCH4V	TGCA	2 cut(s)	11, 181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 301
HpySE526I	ACGT	4 cut(s)	135, 440, 483, 515
Hsp92II	CATG	2 cut(s)	45, 237
HspAI	GCGC	1 cut(s)	97
Kpn2I	TCCGGA	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	187, 469
LmnI	GCTCC	2 cut(s)	243, 300
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	4 cut(s)	135, 440, 483, 515
MaeIII	GTNAC	2 cut(s)	215, 554
MalI	GATC	2 cut(s)	189, 471
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	2 cut(s)	187, 469
MboII	GAAGA	5 cut(s)	466, 469, 557, 590, 593
MlsI	TGGCCA	1 cut(s)	544
MluCI	AATT	1 cut(s)	376
MluNI	TGGCCA	1 cut(s)	544
MlyI	GAGTC	4 cut(s)	142, 323, 425, 525
MmeI	TCCRAC	2 cut(s)	6, 118
MnlI	CCTC	6 cut(s)	251, 269, 288, 416, 521, 529
Mox20I	TGGCCA	1 cut(s)	544
MroI	TCCGGA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	544
MseI	TTAA	2 cut(s)	170, 610
MslI	CAYNNNNRTG	2 cut(s)	40, 222
Msp20I	TGGCCA	1 cut(s)	544
MspI	CCGG	3 cut(s)	88, 345, 453
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	206, 301
NcoI	CCATGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	187, 469
NlaIII	CATG	2 cut(s)	45, 237
NlaIV	GGNNCC	2 cut(s)	111, 239
NmuCI	GTSAC	2 cut(s)	215, 554
PcsI	WCGNNNNNNNCGW	2 cut(s)	260, 521
PfeI	GAWTC	1 cut(s)	562
PleI	GAGTC	4 cut(s)	142, 323, 425, 525
PpsI	GAGTC	4 cut(s)	142, 323, 425, 525
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	111, 239
PspPI	GGNCC	4 cut(s)	110, 256, 361, 415
PspPPI	RGGWCCY	1 cut(s)	110
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
RseI	CAYNNNNRTG	2 cut(s)	40, 222
SaqAI	TTAA	2 cut(s)	170, 610
Sau3AI	GATC	2 cut(s)	187, 469
Sau96I	GGNCC	4 cut(s)	110, 256, 361, 415
SchI	GAGTC	4 cut(s)	142, 323, 425, 525
ScrFI	CCNGG	1 cut(s)	501
SetI	ASST	9 cut(s)	138, 366, 408, 443, 468, 486, 513, 518, 591
SinI	GGWCC	3 cut(s)	110, 256, 361
SmiMI	CAYNNNNRTG	2 cut(s)	40, 222
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	6 cut(s)	65, 163, 198, 209, 293, 298
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	233
TaiI	ACGT	4 cut(s)	138, 443, 486, 518
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	1 cut(s)	376
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	170, 610
Tru9I	TTAA	2 cut(s)	170, 610
TscAI	CASTG	1 cut(s)	563
TseFI	GTSAC	2 cut(s)	215, 554
Tsp45I	GTSAC	2 cut(s)	215, 554
TspDTI	ATGAA	1 cut(s)	581
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	563
VpaK11BI	GGWCC	3 cut(s)	110, 256, 361
XapI	RAATTY	1 cut(s)	376
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.