Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006430

Physical Location & Seq

Genomic Coordinates Forward (+)

7451279 .. 7455635

Gene Structure 4357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGGCGAATTTCAACGACGTCGGAACCAAGCACGACCTCCCAATGGGCCTGACGGAGAACGACTCTGCCACGTTTCTCTCCACCGGCAACATCTGCCTCGATCTCTTCTTCCACATCATCCCAAACACTCCAGGCGACTACCTCACCGATGGGACTCCAATGGTTGCCAGTGTCGTGTCATTGGCTTCTTCCTTTATCGCAATCACTTCATCTTCTTCACCTTCATATTCTTCTTCGTTTTTAACGAAACTAAGGCACGCGCCGAGTCTCTTTCTCCGGTCTTTGAAGCCCCAAAGATTTTCCTCTGCTGAACTTGCTACGAGGACTGGGGCTACCCACGTCATTGTCACTTTTGAAGGTAAATATGCAATTGTCACATATAGATGGCAAAAGTTCAGTGACGTGTATCTTGACAAGGAAATATTAGACTTCCTTGCCAAGTATGCAGACGAGTTTCTGGTACATGGTGTTGATGTGGAAGGGAAAAATTGGCTGCAACGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0000162 GO:0003674 GO:0003824 GO:0003949 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

His_biosynth

Protein Analysis

169

Amino Acids

18.75

Weight (kDa)

5.9

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006430)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0065551 RchiOBHm_Chr7g0210331
rosa_laevigata	RLG00000013135
rosa_multiflora	Rmu_sc0000573.1_g000032 Rmu_sc0002482.1_g000022 Rmu_sc0002853.1_g000007 Rmu_sc0004465.1_g000025 Rmu_sc0008877.1_g000005 Rmu_sc0012973.1_g000003 Rmu_sc0025057.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086520 Rroxscaffold_3G00227130 Rroxscaffold_5G00377700
rosa_rugosa	Rorug01G0061800
rosa_samantha	Rh1AG059300 Rh1AG069300 Rh1AG241800 Rh1BG052700 Rh1CG225600 Rh1CG299900 Rh2BG263100 Rh2CG584100 Rh3BG245100 Rh4BG041800 Rh5AG536800 Rh6AG270100 Rh6BG090500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccII	CGCG	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	16, 289, 359
AjiI	CACGTC	2 cut(s)	343, 406
AjnI	CCWGG	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	496
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	139, 213
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	146, 381
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	497
BlsI	GCNGC	1 cut(s)	498
Bme1390I	CCNGG	1 cut(s)	135
BmgBI	CACGTC	2 cut(s)	343, 406
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	171, 334
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	2 cut(s)	171, 334
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	87, 280
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	171, 334
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 317, 446
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	51
BtrI	CACGTC	2 cut(s)	343, 406
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	178, 406
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	5 cut(s)	51, 188, 292, 335, 496
CviKI_1	RGCY	5 cut(s)	51, 188, 292, 335, 496
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	470
FaiI	YATR	6 cut(s)	229, 369, 382, 384, 447, 468
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	497
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	497
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	2 cut(s)	87, 280
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	3 cut(s)	65, 157, 268
HpaII	CCGG	2 cut(s)	87, 280
HphI	GGTGA	2 cut(s)	139, 213
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	413
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	3 cut(s)	234, 353, 476
HpyCH4IV	ACGT	4 cut(s)	21, 74, 342, 405
HpyCH4V	TGCA	3 cut(s)	371, 449, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 317, 446
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	4 cut(s)	21, 74, 342, 405
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	8 cut(s)	65, 100, 120, 147, 184, 293, 315, 446
Lsp1109I	GCAGC	1 cut(s)	483
MaeII	ACGT	4 cut(s)	21, 74, 342, 405
MaeIII	GTNAC	3 cut(s)	349, 376, 401
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	7 cut(s)	100, 103, 183, 207, 210, 225, 228
MfeI	CAATTG	1 cut(s)	372
MluCI	AATT	3 cut(s)	10, 372, 490
MlyI	GAGTC	3 cut(s)	59, 151, 277
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	5 cut(s)	50, 110, 155, 316, 318
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	385
MspI	CCGG	2 cut(s)	87, 280
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	96, 317, 446
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	3 cut(s)	349, 376, 401
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	498
PleI	GAGTC	3 cut(s)	59, 151, 276
PpsI	GAGTC	3 cut(s)	59, 151, 276
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	497
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	3 cut(s)	59, 151, 277
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	8 cut(s)	24, 42, 77, 147, 226, 345, 364, 408
SmiMI	CAYNNNNRTG	1 cut(s)	385
Sse9I	AATT	3 cut(s)	10, 372, 490
SspI	AATATT	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	4 cut(s)	24, 77, 345, 408
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	10, 372, 490
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	178, 406
TseFI	GTSAC	3 cut(s)	349, 376, 401
TseI	GCWGC	1 cut(s)	496
Tsp45I	GTSAC	3 cut(s)	349, 376, 401
TspDTI	ATGAA	2 cut(s)	201, 216
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	178, 406
XapI	RAATTY	1 cut(s)	10
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.