Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Reverse (-)

161881 .. 163864

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgggttcgacaaaatgcttagatgcctctgcagggaacaaggaacggttgcgttggacgcaggagctacacgatatgttcgttgaggcagttaccaagcttggtggccctgatagggcaacaccaaagggtattctgaaggctatgggagtttctggactgaccatctaccatatcaaaagccatttgcaggtgcacaagagcttgaagcaaaaatttgaagcccagggaaggttccttgatacaatttcagcagatcggagtcgcaatgataaccgcccgacctttacgaaacctatcaaacccatatctagaaaatcgctgccttccctctgtgaggaatccgaatcaaatgctaaggacttcgggacgtctgactcggacgctgagaagaccgagattcaatcctctggagaagaattccaagctttgaagaagcaaagggtacataatcaaaacgacgacaacatggcatggaattttcctatcattgaggatcaaacggccaatatatcatcatatcctgcagtgtatgatcagatcagctttccttggaactttggagcctgcacatcgcctttagtccccagtttcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

199

Amino Acids

22.24

Weight (kDa)

6.96

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 66	6.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	181
AatII	GACGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	181
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	3 cut(s)	215, 419, 478
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
AgsI	TTSAA	4 cut(s)	208, 221, 404, 433
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	5 cut(s)	67, 100, 204, 428, 546
AluI	AGCT	5 cut(s)	67, 100, 204, 428, 546
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	2 cut(s)	106, 504
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	3 cut(s)	215, 419, 478
AspS9I	GGNCC	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	519
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	535
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	30, 525
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	236, 565
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	225, 226, 551
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	225, 226, 551
BseLI	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	2 cut(s)	108, 506
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	382, 569
BslI	CCNNNNNNNGG	5 cut(s)	33, 115, 190, 231, 337
BsmFI	GGGAC	2 cut(s)	382, 569
BsnI	GGCC	2 cut(s)	108, 506
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	256, 496, 535, 540
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	108, 506
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	236, 565
BspMAI	CTGCAG	2 cut(s)	34, 529
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	3 cut(s)	225, 226, 551
BssMI	GATC	4 cut(s)	256, 496, 535, 540
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	19, 357, 387
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstKTI	GATC	4 cut(s)	259, 499, 538, 543
BstMBI	GATC	4 cut(s)	256, 496, 535, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	2 cut(s)	30, 525
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	108, 506
BtgZI	GCGATG	1 cut(s)	558
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	2 cut(s)	67, 392
Csp6I	GTAC	1 cut(s)	446
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	2 cut(s)	469, 474
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	3 cut(s)	19, 357, 387
DpnI	GATC	4 cut(s)	258, 498, 537, 542
DpnII	GATC	4 cut(s)	256, 496, 535, 540
EaeI	YGGCCR	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	2 cut(s)	472, 477
FaqI	GGGAC	2 cut(s)	382, 569
FatI	CATG	2 cut(s)	468, 473
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	108, 506
HgaI	GACGC	2 cut(s)	67, 392
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	472, 477
HindIII	AAGCTT	2 cut(s)	98, 426
HinfI	GANTC	5 cut(s)	262, 341, 347, 377, 400
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	6 cut(s)	138, 261, 346, 376, 382, 540
Hpy188III	TCNNGA	4 cut(s)	156, 312, 367, 411
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	133, 225, 336
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	5 cut(s)	32, 190, 196, 527, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	19, 357, 387
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	472, 477
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	4 cut(s)	256, 496, 535, 540
LmnI	GCTCC	2 cut(s)	64, 563
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	258, 498, 537, 542
MboI	GATC	4 cut(s)	256, 496, 535, 540
MboII	GAAGA	3 cut(s)	403, 428, 445
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	4 cut(s)	215, 246, 419, 478
MlyI	GAGTC	2 cut(s)	271, 371
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	6 cut(s)	37, 79, 331, 341, 418, 487
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	4 cut(s)	256, 496, 535, 540
NlaIII	CATG	2 cut(s)	472, 477
NlaIV	GGNNCC	2 cut(s)	236, 565
PaqCI	CACCTGC	1 cut(s)	181
PasI	CCCWGGG	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	3 cut(s)	341, 347, 400
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	2 cut(s)	270, 371
PpsI	GAGTC	2 cut(s)	270, 371
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	236, 565
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	2 cut(s)	34, 529
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	4 cut(s)	256, 496, 535, 540
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	271, 371
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	30, 525
Sse9I	AATT	4 cut(s)	215, 246, 419, 478
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	410
TasI	AATT	4 cut(s)	215, 246, 419, 478
TfiI	GAWTC	3 cut(s)	341, 347, 400
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	1 cut(s)	322
TspRI	CASTG	1 cut(s)	534
VneI	GTGCAC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	3 cut(s)	215, 419, 478
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.