Rmu_sc0000968.1_g000012

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000968.1
OG0005944
Physical Location & Seq
Forward (+)
79129 .. 79407
279 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
atgcttccgcaccaagaccgtgaagaagtcctcctggcaggtgatcgagcggtactactcgcgcatgaccctcgacttccacaccaacaagaaggtcctggaggatctgcaaaaatcccgtcgaagcgcctccgcaacaagatcgccggattctcgacccatctcatgaagcgcatccagaagggccccgtccgcgtcatctccctcaagctccaggaggaggagcgcgagcgccgcatggactttgtcccaccgacgagatcgccgtcgacaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17e

Protein Analysis

92

Amino Acids

10.49

Weight (kDa)

10.83

Isoelectric Point (pI)

68.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17e PF00833 37 - 86 1.6e-23 Ribosomal S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 269
AccII CGCG 3 cut(s) 62, 195, 228
AciI CCGC 5 cut(s) 8, 50, 133, 193, 235
AclWI GGATC 1 cut(s) 112
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 220
AjnI CCWGG 3 cut(s) 33, 97, 213
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 1 cut(s) 112
AoxI GGCC 1 cut(s) 184
ApaI GGGCCC 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 5 cut(s) 64, 129, 174, 228, 234
AspS9I GGNCC 3 cut(s) 95, 184, 185
AsuHPI GGTGA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 188
BccI CCATC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 4 cut(s) 53, 87, 124, 158
BciT130I CCWGG 3 cut(s) 35, 99, 215
BfoI RGCGCY 2 cut(s) 130, 235
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 3 cut(s) 35, 99, 215
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 3 cut(s) 95, 184, 185
BmiI GGNNCC 2 cut(s) 186, 187
BmrFI CCNGG 3 cut(s) 35, 99, 215
BmsI GCATC 1 cut(s) 183
BpmI CTGGAG 2 cut(s) 120, 197
BpuEI CTTGAG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 220
BseBI CCWGG 3 cut(s) 35, 99, 215
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 233, 236
BseSI GKGCMC 1 cut(s) 188
Bsh1236I CGCG 3 cut(s) 62, 195, 228
BshFI GGCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 1 cut(s) 186
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 4 cut(s) 43, 104, 141, 260
BspACI CCGC 5 cut(s) 8, 50, 133, 193, 235
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 3 cut(s) 62, 195, 228
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 186, 187
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 50
BssMI GATC 4 cut(s) 43, 104, 141, 260
Bst2UI CCWGG 3 cut(s) 35, 99, 215
Bst4CI ACNGT 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 230
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 3 cut(s) 62, 195, 228
BstH2I RGCGCY 2 cut(s) 130, 235
BstHHI GCGC 5 cut(s) 64, 129, 174, 228, 234
BstKTI GATC 4 cut(s) 46, 107, 144, 263
BstMBI GATC 4 cut(s) 43, 104, 141, 260
BstMWI GCNNNNNNNGC 2 cut(s) 192, 234
BstNI CCWGG 3 cut(s) 35, 99, 215
BstSCI CCNGG 3 cut(s) 33, 97, 213
BstSLI GKGCMC 1 cut(s) 188
BstUI CGCG 3 cut(s) 62, 195, 228
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 230
CciI TCATGA 1 cut(s) 165
CfoI GCGC 5 cut(s) 64, 129, 174, 228, 234
Cfr13I GGNCC 3 cut(s) 95, 184, 185
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 65, 166, 238
CviJI RGCY 2 cut(s) 186, 211
CviKI_1 RGCY 2 cut(s) 186, 211
CviQI GTAC 1 cut(s) 53
DpnI GATC 4 cut(s) 45, 106, 143, 262
DpnII GATC 4 cut(s) 43, 104, 141, 260
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 95
EcoO109I RGGNCCY 3 cut(s) 95, 184, 185
EcoRII CCWGG 3 cut(s) 33, 97, 213
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 3 cut(s) 68, 169, 241
FaiI YATR 3 cut(s) 66, 167, 239
FaqI GGGAC 1 cut(s) 233
FatI CATG 3 cut(s) 64, 165, 237
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 235
GlaI GCGC 5 cut(s) 63, 128, 173, 227, 233
GluI GCNGC 1 cut(s) 235
GsuI CTGGAG 2 cut(s) 120, 197
HaeII RGCGCY 2 cut(s) 130, 235
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 184
HhaI GCGC 5 cut(s) 64, 129, 174, 228, 234
Hin1II CATG 3 cut(s) 68, 169, 241
Hin6I GCGC 5 cut(s) 62, 127, 172, 226, 232
HinP1I GCGC 5 cut(s) 62, 127, 172, 226, 232
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 270
Hpy188III TCNNGA 3 cut(s) 154, 166, 178
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 3 cut(s) 124, 259, 271
HpyAV CCTTC 2 cut(s) 86, 175
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 234
Hsp92II CATG 3 cut(s) 68, 169, 241
HspAI GCGC 5 cut(s) 62, 127, 172, 226, 232
Kzo9I GATC 4 cut(s) 43, 104, 141, 260
LmnI GCTCC 2 cut(s) 216, 223
LpnPI CCDG 9 cut(s) 20, 24, 47, 84, 111, 160, 191, 200, 227
LweI GCATC 1 cut(s) 183
MalI GATC 4 cut(s) 45, 106, 143, 262
MbiI CCGCTC 1 cut(s) 50
MboI GATC 4 cut(s) 43, 104, 141, 260
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 188
MnlI CCTC 7 cut(s) 41, 81, 95, 140, 211, 214, 215
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 35, 99, 215
MvaI CCWGG 3 cut(s) 35, 99, 215
MvnI CGCG 3 cut(s) 62, 195, 228
MwoI GCNNNNNNNGC 2 cut(s) 192, 234
NdeII GATC 4 cut(s) 43, 104, 141, 260
NlaIII CATG 3 cut(s) 68, 169, 241
NlaIV GGNNCC 2 cut(s) 186, 187
PagI TCATGA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PfeI GAWTC 1 cut(s) 150
PflFI GACNNNGTC 1 cut(s) 245
PfoI TCCNGGA 2 cut(s) 97, 213
PkrI GCNGC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 3 cut(s) 33, 97, 213
PspGI CCWGG 3 cut(s) 33, 97, 213
PspN4I GGNNCC 2 cut(s) 186, 187
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 3 cut(s) 95, 184, 185
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 245
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 268
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 4 cut(s) 43, 104, 141, 260
Sau96I GGNCC 3 cut(s) 95, 184, 185
ScrFI CCNGG 3 cut(s) 35, 99, 215
SduI GDGCHC 1 cut(s) 188
SetI ASST 4 cut(s) 43, 97, 213, 278
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SsiI CCGC 5 cut(s) 8, 50, 133, 193, 235
StyD4I CCNGG 3 cut(s) 33, 97, 213
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 5 cut(s) 46, 73, 122, 155, 269
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 182
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.