Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001354.1

Orthogroup ID

OG0004796

Physical Location & Seq

Genomic Coordinates Reverse (-)

99006 .. 102388

Gene Structure 3383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgaaagcggatgagaagccgagctggggtttggtgtcaccgtccggagtggcctatcatttcggtacgagtggactttccgttgcggtggctaccgcagtcactcaccctttagatgtgctcaaagttaggctgcaaatgcaacttgttgggcagaaagggagaatgaaagcggatgagaagccgagctggggtttggtgtcaccgtccggagtggcctatcatttcggtacgagtggactttccgttgcggtggctaccgcagtcactcaccctttagatgtgctcaaagttaggctgcaaatgcaacttgttgggcagaaaggtcctctaactggaatgggacaattgtttcttcaagttcttaagaatgaaggaccaagatttttgtatctgggattgacacctgcattgacaaggtctgttctttatggaggtctccgtttaggcttgtatgaaccctcaaagtatgcctgcaattgggcgtttgggtccaacaatgtttttgttaagattggatccgcgggatttggtggtgcaattgcaactgcactgacgaatccagttgaggttttgaaggtgcgactacagatgaatccgaacttgaggaaaggtgcagctggagaagtgcgtgcaatcattggtgaagagggagtgaaagctctttggaagggtgttggccctgctatgactagagctgctacattgactgcatcacaacttgcaacctatgacgaaaccaagcggatgttgattaggtggacaccacttgaagaaggattccatctacatctcacctcaagcacagttgcaggcatggtgagtaccctcctgactgcacctgtagacatgataaaaacccgtctcatgctgcaacaggaatctgaaagagttggaagctatagaaatggatttcattgtgcatatcaggtcctgcgtacagaaggcccaagaggtctttacaaggggagccttgcaatgtttgcaagattgggtccacaaacgacaattacttttgtagtctgtgagaagctacgtgagcttgctggattgaaagcaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

354

Amino Acids

38.1

Weight (kDa)

9.89

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	16 - 54	6.3e-06	Mitochondrial carrier protein
Mito_carr	PF00153	71 - 156	1.1e-17	Mitochondrial carrier protein
Mito_carr	PF00153	167 - 252	3.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	261 - 348	1.1e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115 AT4G03115
fragaria_vesca	FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640 FvH4_2g24640
malus_domestica	MD03G1275100.v1.1 MD11G1297100.v1.1 MD11G1297200.v1.1
prunus_persica	Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1 Prupe.8G251700_v2.0.a1
pyrus_communis	pycom03g21920
rosa_chinensis	RchiOBHm_Chr6g0292471
rosa_laevigata	RLG00000012021
rosa_multiflora	Rmu_co8506423.1_g000001 Rmu_sc0001354.1_g000025
rosa_roxburghii	Rroxscaffold_7G00175030
rosa_rugosa	Rorug06G0226900
rosa_samantha	Rh6AG340200 Rh6BG347500 Rh6CG354500 Rh6DG340300
rosa_wichuraiana	Rw6G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	524
AccIII	TCCGGA	2 cut(s)	44, 209
AciI	CCGC	9 cut(s)	8, 86, 96, 173, 251, 261, 522, 524, 745
AclWI	GGATC	2 cut(s)	513, 526
AfaI	GTAC	4 cut(s)	67, 232, 826, 940
AfiI	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	359, 577, 773, 1054
AluBI	AGCT	8 cut(s)	24, 189, 620, 662, 698, 900, 1033, 1042
AluI	AGCT	8 cut(s)	24, 189, 620, 662, 698, 900, 1033, 1042
Alw21I	GWGCWC	2 cut(s)	123, 288
Alw26I	GTCTC	2 cut(s)	443, 869
AlwI	GGATC	2 cut(s)	513, 526
AlwNI	CAGNNNCTG	1 cut(s)	934
Aor13HI	TCCGGA	2 cut(s)	44, 209
AoxI	GGCC	4 cut(s)	51, 216, 679, 946
ApeKI	GCWGC	5 cut(s)	133, 298, 617, 698, 871
AspS9I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
AsuHPI	GGTGA	7 cut(s)	30, 98, 195, 263, 656, 787, 832
AvaII	GGWCC	5 cut(s)	326, 377, 492, 931, 995
BamHI	GGATCC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	123, 288
BbvI	GCAGC	5 cut(s)	120, 285, 629, 685, 858
BccI	CCATC	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	443, 869
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	3 cut(s)	587, 843, 901
BfrI	CTTAAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
BlsI	GCNGC	5 cut(s)	135, 300, 619, 700, 873
Bme18I	GGWCC	5 cut(s)	326, 377, 492, 931, 995
BmgT120I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
BmiI	GGNNCC	4 cut(s)	493, 520, 971, 996
BmsI	GCATC	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	625, 784
BsaAI	YACGTR	1 cut(s)	1037
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	2 cut(s)	44, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
Bse1I	ACTGG	2 cut(s)	340, 563
Bse3DI	GCAATG	1 cut(s)	984
BseAI	TCCGGA	2 cut(s)	44, 209
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	3 cut(s)	16, 181, 753
BseLI	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
BseMI	GCAATG	1 cut(s)	984
BseNI	ACTGG	2 cut(s)	340, 563
BseXI	GCAGC	5 cut(s)	120, 285, 629, 685, 858
BseYI	CCCAGC	2 cut(s)	24, 189
BsgI	GTGCAG	3 cut(s)	534, 636, 822
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	4 cut(s)	53, 218, 681, 948
BsiHKAI	GWGCWC	2 cut(s)	123, 288
BsiSI	CCGG	2 cut(s)	45, 210
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	4 cut(s)	26, 191, 335, 480
BsmAI	GTCTC	2 cut(s)	443, 869
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	4 cut(s)	53, 218, 681, 948
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	123, 288
Bsp13I	TCCGGA	2 cut(s)	44, 209
Bsp143I	GATC	1 cut(s)	518
BspACI	CCGC	9 cut(s)	8, 86, 96, 173, 251, 261, 522, 524, 745
BspANI	GGCC	4 cut(s)	53, 218, 681, 948
BspEI	TCCGGA	2 cut(s)	44, 209
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	4 cut(s)	493, 520, 971, 996
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	513, 526
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	984
BsrI	ACTGG	2 cut(s)	340, 563
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	518
Bst4CI	ACNGT	3 cut(s)	42, 207, 808
Bst6I	CTCTTC	1 cut(s)	642
BstAFI	CTTAAG	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstBAI	YACGTR	1 cut(s)	1037
BstC8I	GCNNGC	4 cut(s)	475, 633, 814, 1044
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	16, 181, 753
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	1 cut(s)	521
BstMAI	GTCTC	2 cut(s)	443, 869
BstMBI	GATC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 304, 983, 1039
BstSFI	CTRYAG	3 cut(s)	587, 843, 901
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	5 cut(s)	120, 285, 629, 685, 858
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	4 cut(s)	53, 218, 681, 948
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	3 cut(s)	16, 181, 753
BtsIMutI	CAGTG	1 cut(s)	551
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	4 cut(s)	475, 633, 814, 1044
CaiI	CAGNNNCTG	1 cut(s)	934
Cfr13I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
Cfr42I	CCGCGG	1 cut(s)	525
Csp6I	GTAC	4 cut(s)	66, 231, 825, 939
CviAII	CATG	3 cut(s)	817, 850, 868
CviQI	GTAC	4 cut(s)	66, 231, 825, 939
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	5 cut(s)	326, 377, 492, 931, 995
EcoO109I	RGGNCCY	2 cut(s)	326, 931
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	3 cut(s)	820, 853, 871
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	816, 849, 867
FauI	CCCGC	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
FokI	GGATG	3 cut(s)	23, 188, 760
Fsp4HI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
FspBI	CTAG	1 cut(s)	693
GluI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
GsaI	CCCAGC	2 cut(s)	28, 193
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	4 cut(s)	53, 218, 681, 948
HapII	CCGG	2 cut(s)	45, 210
Hin1II	CATG	3 cut(s)	820, 853, 871
HinfI	GANTC	4 cut(s)	559, 595, 780, 881
HpaII	CCGG	2 cut(s)	45, 210
HphI	GGTGA	7 cut(s)	30, 98, 195, 263, 656, 787, 832
Hpy166II	GTNNAC	5 cut(s)	74, 239, 762, 847, 998
Hpy188I	TCNGA	2 cut(s)	600, 886
Hpy188III	TCNNGA	3 cut(s)	45, 210, 832
Hpy8I	GTNNAC	5 cut(s)	74, 239, 762, 847, 998
HpyAV	CCTTC	5 cut(s)	368, 571, 664, 770, 938
HpyCH4III	ACNGT	3 cut(s)	42, 207, 808
HpyCH4IV	ACGT	1 cut(s)	1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 304, 983, 1039
HpySE526I	ACGT	1 cut(s)	1036
Hsp92II	CATG	3 cut(s)	820, 853, 871
Kpn2I	TCCGGA	2 cut(s)	44, 209
KspI	CCGCGG	1 cut(s)	525
Kzo9I	GATC	1 cut(s)	518
LmnI	GCTCC	1 cut(s)	969
Lsp1109I	GCAGC	5 cut(s)	120, 285, 629, 685, 858
LweI	GCATC	1 cut(s)	722
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	1036
MaeIII	GTNAC	4 cut(s)	36, 100, 201, 265
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	3 cut(s)	347, 659, 785
MfeI	CAATTG	3 cut(s)	347, 478, 540
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	123, 288
MluCI	AATT	4 cut(s)	347, 478, 540, 1008
MmeI	TCCRAC	2 cut(s)	519, 874
MnlI	CCTC	9 cut(s)	339, 428, 472, 562, 600, 643, 808, 839, 947
MroI	TCCGGA	2 cut(s)	44, 209
MseI	TTAA	2 cut(s)	366, 510
MspA1I	CMGCKG	2 cut(s)	524, 620
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	2 cut(s)	45, 210
MunI	CAATTG	3 cut(s)	347, 478, 540
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	4 cut(s)	139, 304, 983, 1039
NdeII	GATC	1 cut(s)	518
NlaIII	CATG	3 cut(s)	820, 853, 871
NlaIV	GGNNCC	4 cut(s)	493, 520, 971, 996
NmeAIII	GCCGAG	2 cut(s)	45, 210
NmuCI	GTSAC	4 cut(s)	36, 100, 201, 265
PaqCI	CACCTGC	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	559, 595, 780, 881
PflFI	GACNNNGTC	1 cut(s)	418
PkrI	GCNGC	5 cut(s)	135, 300, 619, 700, 873
Ppu21I	YACGTR	1 cut(s)	1037
PpuMI	RGGWCCY	2 cut(s)	326, 931
Psp5II	RGGWCCY	2 cut(s)	326, 931
PspFI	CCCAGC	2 cut(s)	24, 189
PspN4I	GGNNCC	4 cut(s)	493, 520, 971, 996
PspPI	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
PspPPI	RGGWCCY	2 cut(s)	326, 931
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	4 cut(s)	67, 232, 826, 940
RsaNI	GTAC	4 cut(s)	66, 231, 825, 939
SacII	CCGCGG	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	366, 510
SatI	GCNGC	5 cut(s)	134, 299, 618, 699, 872
Sau3AI	GATC	1 cut(s)	518
Sau96I	GGNCC	7 cut(s)	326, 377, 492, 680, 931, 947, 995
SduI	GDGCHC	2 cut(s)	123, 288
SfaNI	GCATC	1 cut(s)	722
SfcI	CTRYAG	3 cut(s)	587, 843, 901
Sfr303I	CCGCGG	1 cut(s)	525
SgrBI	CCGCGG	1 cut(s)	525
SinI	GGWCC	5 cut(s)	326, 377, 492, 931, 995
SmlI	CTYRAG	3 cut(s)	365, 604, 799
SmoI	CTYRAG	3 cut(s)	365, 604, 799
Sse9I	AATT	4 cut(s)	347, 478, 540, 1008
SsiI	CCGC	9 cut(s)	8, 86, 96, 173, 251, 261, 522, 524, 745
SspMI	CTAG	1 cut(s)	693
TaaI	ACNGT	3 cut(s)	42, 207, 808
TaiI	ACGT	1 cut(s)	1039
TasI	AATT	4 cut(s)	347, 478, 540, 1008
TfiI	GAWTC	4 cut(s)	559, 595, 780, 881
Tru1I	TTAA	2 cut(s)	366, 510
Tru9I	TTAA	2 cut(s)	366, 510
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	4 cut(s)	36, 100, 201, 265
TseI	GCWGC	5 cut(s)	133, 298, 617, 698, 871
Tsp45I	GTSAC	4 cut(s)	36, 100, 201, 265
TspDTI	ATGAA	6 cut(s)	17, 182, 387, 471, 608, 905
TspGWI	ACGGA	3 cut(s)	70, 235, 431
TspRI	CASTG	1 cut(s)	558
Tth111I	GACNNNGTC	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	5 cut(s)	326, 377, 492, 931, 995
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.