Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001438.1

Orthogroup ID

OG0004176

Physical Location & Seq

Genomic Coordinates Reverse (-)

106670 .. 109390

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

atgatgcgcgatggcaccgctactccgattgcctccctcaatacagattatgtatcagacagttccaatgacatgatgaaaccctctatcaagaatccgggtgcatatcaagatgcagcattatcaccttacaagcatgatcgacgtgaaggattgcgacctcgtcgctcaaacacaatttcaactccagatataatttttgggtatgacaatgatgatcctggtagttcggttgaccaggatattgaatacaatgattcggatgatggtcagaaagatgatggagatattggtgagggccaagatggaagaagacggtatcattttcgaaatcgaaatcgttcacaagtccaagtcgacaggttctctattgatcgaggaatggggccaaaggtcggtaaggatgtaagagagtgtggatcctcagttcacaagcgtcatcgaattacaaggactgatgattctgcgctcgaccaagctcaaactgctgggcctgcagggccaagctcagagggagggacagacatacaacctctgcagctggttgatcatagtgtcaattttgaggatataggggggctttctcaatatattgatgctctgaaggaaatggttttctttcctttactctatccagatctctttgtgaattatcatatcaccccaccaaggggtgtcttgttatgtggtcctcctggtactgggaagacattaattgccagagccttagcctctgctgcatccaaggctggccagaaagttagtttttacatgaggaagggtgcagatgtgctaagcaagtgggttggcgaggctgaaagacaattgaaacttctttttgaggaagcacagagaaatcaaccttcaatcatattctttgatgaaatagatggcctggctcctgtaagatccagcaggcaagagcaaactcataattctattgtgtctacattgcttgctctcatggatggtcttgattcccgtggaaaagtggttttgctcggagcaaccaaccgagttgatgcaattgatggagctttgcggcgccccggtagatttgatcgtgaattcaactttcctttgcctggctgtgaggcccgtgctgaaattttagacattcacagtcggaaatggaagcatcctccttcgaatgagttaaaattggagcttgcagctagctgtattggatactgtggtgctgatttaaaggctctttgcactgaagctaccattcgtgctttccgtgaaaaatatcctcaggtctacaaaagtgatgataaatttgtaattgatgttgattcagtaagggttgaaaagtatcactttgttgaagccatgtcaacaatcaccccagctgctcatagaggtgctgctgtgcactctaggccattgtctttcgtagttgcaccatgcctgcagagccatctacagaaagccatgaaccatatatccgatattttccctccgattgcagtgtcatcagaattgaccaagctttccgggctgtctgcttgtggctctgccattcctcctgtttataggcctcggcttcttctatgtggtggtgaaggttctggcctggatcatctagggcctgctattttacatgaactcaaccagtttcctgttcattgtctaggacttgcatctcttctatctgatcctagtgcaaagacaccagaggaagcgctggtacatatatttggtgaagcaaggagaacgacgccatccattctctacttgccacagttcaatctgtggtgggacagggcacatgagcatctcggcgcggtttttctgactttgctacaagaagttccatctgatttacctgtattactacttgcaacatcatctgaagttgatgccatcacctcttcagtattctccgaacgttctgtctatcaggtggctggtacgccatctaatgaagaaagatgtttgttttttgaccgtctgatcgaagctgcctcgtcagtcttgttggagggcaggaataaaaggtctcaggctgaacttccgaaggctccaaaagtggcaagcggtccaaaggtgtcagagttaaacgccaaggtagaatctgagcagcgtgctctttgcgtattgcagatgtgcctcagagatgtttgcaatcgaattctatccgatgagaggtttagtgcttttcactatcccatcttggatgaggatgctccaaactatcactcaattatccaaaatcctatggatgttgcgaccctgctgcagcgtgttgactctgggctgtatgttacatgtaaagcattcctgcaagatgttgatcttatagtttccaatgcaaaggcttataatggagatgattacaatggggctaggattgttagtagagcttatgagcttggatacgtggtacatggaatgctgcagtcacagatgggccctggactgattgcatattgtcacgagattgctgctcaaggtggcccagaagatgtatctgttgtcacaaaggcgagtgctcgacttcgtaaggtaaatctggatcctagctacgaggcacacaagaggctttttgtgcagcggaccaaaacttgtgacattccacagctcgagaggctatacgcaagaattgtgaaggacattttcaacatcagggacagagacaaaagcaatatagtgccaccaatgcatttaattttccaatacttgtctaaatttgcagaggatgaagcaaacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010639 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031935 GO:0031936 GO:0033043 GO:0033044 GO:0034641 GO:0035510 GO:0040029 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045815 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:1901360 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Bromodomain

Protein Analysis

906

Amino Acids

100.31

Weight (kDa)

6.03

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IstB_IS21	PF01695	224 - 302	3.8e-07	IstB-like ATP binding protein
AAA	PF00004	226 - 361	7.5e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	389 - 425	1.1e-09	AAA+ lid domain
Bromodomain	PF00439	709 - 780	1.7e-14	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05910
fragaria_vesca	FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720 FvH4_4g10720
malus_domestica	MD04G1007800.v1.1
prunus_persica	Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1 Prupe.1G191800_v2.0.a1
pyrus_communis	pycom04g03460
rosa_chinensis	RchiOBHm_Chr3g0496841 RchiOBHm_Chr4g0406861
rosa_laevigata	RLG00000008748 RLG00000022493
rosa_multiflora	Rmu_sc0000600.1_g000031 Rmu_sc0001438.1_g000025
rosa_roxburghii	Rroxscaffold_5G00351650 Rroxscaffold_6G00388620
rosa_rugosa	Rorug03G0288300 Rorug04G0075300
rosa_samantha	Rh3AG332000 Rh3BG368600 Rh3CG364900 Rh3DG368000 Rh4AG141500 Rh4BG138300 Rh4CG148200 Rh4DG135400
rosa_wichuraiana	Rw3G029090 Rw4G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2328
AccB1I	GGYRCC	2 cut(s)	14, 1044
AccI	GTMKAC	3 cut(s)	357, 947, 1263
AccII	CGCG	2 cut(s)	9, 1790
AciI	CCGC	5 cut(s)	18, 1042, 1790, 2043, 2560
AclI	AACGTT	1 cut(s)	1894
AclWI	GGATC	8 cut(s)	212, 414, 427, 903, 1590, 1655, 2516, 2529
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	5 cut(s)	1067, 1107, 1280, 2136, 2693
AcuI	CTGAAG	4 cut(s)	623, 1242, 1863, 1878
AcyI	GRCGYC	2 cut(s)	1045, 1724
AfaI	GTAC	4 cut(s)	700, 1695, 1918, 2391
AfeI	AGCGCT	1 cut(s)	1689
AfiI	CCNNNNNNNGG	7 cut(s)	395, 669, 670, 671, 701, 1085, 2151
AflIII	ACRYGT	1 cut(s)	2273
AgsI	TTSAA	9 cut(s)	183, 248, 829, 867, 1072, 1313, 1331, 1753, 2626
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	7 cut(s)	220, 237, 694, 894, 1084, 1578, 2419
AloI	GAACNNNNNNTCC	4 cut(s)	411, 443, 1433, 1465
Alw21I	GWGCWC	3 cut(s)	1380, 2095, 2500
Alw26I	GTCTC	2 cut(s)	2010, 2634
Alw44I	GTGCAC	1 cut(s)	1376
AlwI	GGATC	8 cut(s)	212, 414, 427, 903, 1590, 1655, 2516, 2529
Ama87I	CYCGRG	1 cut(s)	2588
Aor51HI	AGCGCT	1 cut(s)	1689
ApaI	GGGCCC	1 cut(s)	2420
ApaLI	GTGCAC	1 cut(s)	1376
ApoI	RAATTY	5 cut(s)	1067, 1107, 1280, 2136, 2693
ArsI	GACNNNNNNTTYG	2 cut(s)	1884, 1916
AseI	ATTAAT	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	340
AspLEI	GCGC	5 cut(s)	9, 469, 1047, 1690, 1790
AsuC2I	CCSGG	3 cut(s)	99, 1050, 1501
AsuHPI	GGTGA	7 cut(s)	117, 305, 652, 1339, 1577, 1718, 1864
AsuII	TTCGAA	2 cut(s)	328, 1148
AsuNHI	GCTAGC	1 cut(s)	1175
AvaI	CYCGRG	1 cut(s)	2588
AvaII	GGWCC	3 cut(s)	689, 2045, 2562
AxyI	CCTNAGG	1 cut(s)	1257
BaeGI	GKGCMC	3 cut(s)	1380, 1774, 2420
BaeI	ACNNNNGTAYC	2 cut(s)	1180, 1213
BalI	TGGCCA	1 cut(s)	753
BamHI	GGATCC	2 cut(s)	419, 2521
BanI	GGYRCC	2 cut(s)	14, 1044
BanII	GRGCYC	1 cut(s)	2420
BarI	GAAGNNNNNNTAC	2 cut(s)	1677, 1709
BauI	CACGAG	1 cut(s)	2441
BbsI	GAAGAC	2 cut(s)	319, 713
Bbv12I	GWGCWC	3 cut(s)	1380, 2095, 2500
BcgI	CGANNNNNNTGC	4 cut(s)	2224, 2258, 2432, 2466
BciT130I	CCWGG	7 cut(s)	222, 239, 696, 896, 1086, 1580, 2421
BciVI	GTATCC	2 cut(s)	1181, 2375
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	3 cut(s)	99, 1050, 1501
BcoDI	GTCTC	2 cut(s)	2010, 2634
BfaI	CTAG	7 cut(s)	1176, 1383, 1589, 1637, 1665, 2352, 2526
BfmI	CTRYAG	6 cut(s)	495, 536, 1415, 1427, 2243, 2402
BfoI	RGCGCY	2 cut(s)	1048, 1691
BfuI	GTATCC	2 cut(s)	1181, 2375
BglI	GCCNNNNNGGC	1 cut(s)	499
BglII	AGATCT	1 cut(s)	637
BlpI	GCTNAGC	1 cut(s)	794
Bme18I	GGWCC	3 cut(s)	689, 2045, 2562
BmeT110I	CYCGRG	1 cut(s)	2588
BmgBI	CACGTC	1 cut(s)	146
BmiI	GGNNCC	8 cut(s)	16, 387, 421, 900, 1046, 2028, 2418, 2523
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	9 cut(s)	103, 586, 749, 1012, 1147, 1655, 1789, 1855, 2179
BmtI	GCTAGC	1 cut(s)	1179
BmuI	ACTGGG	1 cut(s)	711
BpiI	GAAGAC	2 cut(s)	319, 713
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	727
Bpu1102I	GCTNAGC	1 cut(s)	794
Bpu14I	TTCGAA	2 cut(s)	328, 1148
BpuEI	CTTGAG	1 cut(s)	2439
BpuMI	CCSGG	3 cut(s)	99, 1050, 1501
BsaAI	YACGTR	1 cut(s)	2386
BsaBI	GATNNNNATC	1 cut(s)	2298
BsaHI	GRCGYC	2 cut(s)	1045, 1724
BsaI	GGTCTC	1 cut(s)	2010
BsaJI	CCNNGG	7 cut(s)	668, 744, 982, 1048, 1544, 2070, 2419
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	7 cut(s)	395, 669, 670, 671, 701, 1085, 2151
Bse1I	ACTGG	2 cut(s)	706, 1618
Bse21I	CCTNAGG	1 cut(s)	1257
Bse3DI	GCAATG	1 cut(s)	950
Bse8I	GATNNNNATC	1 cut(s)	2298
BseBI	CCWGG	7 cut(s)	222, 239, 696, 896, 1086, 1580, 2421
BseDI	CCNNGG	7 cut(s)	668, 744, 982, 1048, 1544, 2070, 2419
BseJI	GATNNNNATC	1 cut(s)	2298
BseLI	CCNNNNNNNGG	7 cut(s)	395, 669, 670, 671, 701, 1085, 2151
BseMI	GCAATG	1 cut(s)	950
BseMII	CTCAG	6 cut(s)	438, 522, 1271, 2021, 2073, 2131
BseNI	ACTGG	2 cut(s)	706, 1618
BseSI	GKGCMC	3 cut(s)	1380, 1774, 2420
BseYI	CCCAGC	2 cut(s)	488, 1351
BsgI	GTGCAG	2 cut(s)	804, 2576
Bsh1236I	CGCG	2 cut(s)	9, 1790
BshNI	GGYRCC	2 cut(s)	14, 1044
BsiHKAI	GWGCWC	3 cut(s)	1380, 2095, 2500
BsiHKCI	CYCGRG	1 cut(s)	2588
BsiSI	CCGG	3 cut(s)	98, 1050, 1500
BslFI	GGGAC	3 cut(s)	532, 1778, 2648
BslI	CCNNNNNNNGG	7 cut(s)	395, 669, 670, 671, 701, 1085, 2151
BsmAI	GTCTC	2 cut(s)	2010, 2634
BsmFI	GGGAC	3 cut(s)	532, 1778, 2648
BsmI	GAATGC	2 cut(s)	2282, 2403
Bso31I	GGTCTC	1 cut(s)	2010
BsoBI	CYCGRG	1 cut(s)	2588
Bsp119I	TTCGAA	2 cut(s)	328, 1148
Bsp120I	GGGCCC	1 cut(s)	2416
Bsp1286I	GDGCHC	5 cut(s)	1380, 1774, 2095, 2420, 2500
Bsp1720I	GCTNAGC	1 cut(s)	794
BspACI	CCGC	5 cut(s)	18, 1042, 1790, 2043, 2560
BspCNI	CTCAG	6 cut(s)	437, 521, 1270, 2020, 2074, 2130
BspFNI	CGCG	2 cut(s)	9, 1790
BspLI	GGNNCC	8 cut(s)	16, 387, 421, 900, 1046, 2028, 2418, 2523
BspMAI	CTGCAG	5 cut(s)	499, 540, 1419, 2247, 2406
BspOI	GCTAGC	1 cut(s)	1179
BspPI	GGATC	8 cut(s)	212, 414, 427, 903, 1590, 1655, 2516, 2529
BspT104I	TTCGAA	2 cut(s)	328, 1148
BspT107I	GGYRCC	2 cut(s)	14, 1044
BspTNI	GGTCTC	1 cut(s)	2010
BsrDI	GCAATG	1 cut(s)	950
BsrI	ACTGG	2 cut(s)	706, 1618
BssECI	CCNNGG	7 cut(s)	668, 744, 982, 1048, 1544, 2070, 2419
BssNI	GRCGYC	2 cut(s)	1045, 1724
BssSI	CACGAG	1 cut(s)	2441
BssT1I	CCWWGG	3 cut(s)	668, 744, 2070
Bst2BI	CACGAG	1 cut(s)	2441
Bst2UI	CCWGG	7 cut(s)	222, 239, 696, 896, 1086, 1580, 2421
Bst4CI	ACNGT	6 cut(s)	62, 318, 1124, 1193, 1749, 1955
Bst6I	CTCTTC	2 cut(s)	1656, 1882
BstACI	GRCGYC	2 cut(s)	1045, 1724
BstBAI	YACGTR	1 cut(s)	2386
BstBI	TTCGAA	2 cut(s)	328, 1148
BstDEI	CTNAG	8 cut(s)	424, 508, 727, 794, 1257, 2007, 2082, 2117
BstDSI	CCRYGG	1 cut(s)	982
BstFNI	CGCG	2 cut(s)	9, 1790
BstH2I	RGCGCY	2 cut(s)	1048, 1691
BstHHI	GCGC	5 cut(s)	9, 469, 1047, 1690, 1790
BstMAI	GTCTC	2 cut(s)	2010, 2634
BstNI	CCWGG	7 cut(s)	222, 239, 696, 896, 1086, 1580, 2421
BstNSI	RCATGY	1 cut(s)	2277
BstSFI	CTRYAG	6 cut(s)	495, 536, 1415, 1427, 2243, 2402
BstSLI	GKGCMC	3 cut(s)	1380, 1774, 2420
BstUI	CGCG	2 cut(s)	9, 1790
BstV2I	GAAGAC	2 cut(s)	319, 713
BstX2I	RGATCY	4 cut(s)	419, 637, 908, 2521
BstYI	RGATCY	4 cut(s)	419, 637, 908, 2521
Bsu36I	CCTNAGG	1 cut(s)	1257
BsuI	GTATCC	2 cut(s)	1181, 2375
BtgI	CCRYGG	1 cut(s)	982
BtgZI	GCGATG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	1479
BtsIMutI	CAGTG	2 cut(s)	1218, 1479
CfoI	GCGC	5 cut(s)	9, 469, 1047, 1690, 1790
CseI	GACGC	2 cut(s)	425, 1732
Csp6I	GTAC	4 cut(s)	699, 1694, 1917, 2390
CviQI	GTAC	4 cut(s)	699, 1694, 1917, 2390
DdeI	CTNAG	8 cut(s)	424, 508, 727, 794, 1257, 2007, 2082, 2117
DinI	GGCGCC	1 cut(s)	1046
DraI	TTTAAA	1 cut(s)	1206
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	1656, 1882
EarI	CTCTTC	2 cut(s)	1656, 1882
Eco130I	CCWWGG	3 cut(s)	668, 744, 2070
Eco147I	AGGCCT	1 cut(s)	1543
Eco24I	GRGCYC	1 cut(s)	2420
Eco31I	GGTCTC	1 cut(s)	2010
Eco47I	GGWCC	3 cut(s)	689, 2045, 2562
Eco47III	AGCGCT	1 cut(s)	1689
Eco57I	CTGAAG	4 cut(s)	623, 1242, 1863, 1878
Eco81I	CCTNAGG	1 cut(s)	1257
Eco88I	CYCGRG	1 cut(s)	2588
EcoO109I	RGGNCCY	2 cut(s)	1592, 2417
EcoRI	GAATTC	2 cut(s)	1067, 2136
EcoRII	CCWGG	7 cut(s)	220, 237, 694, 894, 1084, 1578, 2419
EcoT14I	CCWWGG	3 cut(s)	668, 744, 2070
EcoT22I	ATGCAT	1 cut(s)	2670
EcoT38I	GRGCYC	1 cut(s)	2420
EgeI	GGCGCC	1 cut(s)	1046
EheI	GGCGCC	1 cut(s)	1046
ErhI	CCWWGG	3 cut(s)	668, 744, 2070
FalI	AAGNNNNNCTT	2 cut(s)	1307, 1339
FaqI	GGGAC	3 cut(s)	532, 1778, 2648
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	3 cut(s)	357, 947, 1263
FriOI	GRGCYC	1 cut(s)	2420
FspBI	CTAG	7 cut(s)	1176, 1383, 1589, 1637, 1665, 2352, 2526
GlaI	GCGC	5 cut(s)	8, 468, 1046, 1689, 1789
GsaI	CCCAGC	2 cut(s)	492, 1355
GsuI	CTGGAG	1 cut(s)	171
HaeII	RGCGCY	2 cut(s)	1048, 1691
HapII	CCGG	3 cut(s)	98, 1050, 1500
HgaI	GACGC	2 cut(s)	425, 1732
HhaI	GCGC	5 cut(s)	9, 469, 1047, 1690, 1790
Hin1I	GRCGYC	2 cut(s)	1045, 1724
Hin6I	GCGC	5 cut(s)	7, 467, 1045, 1688, 1788
HinP1I	GCGC	5 cut(s)	7, 467, 1045, 1688, 1788
HincII	GTYRAC	4 cut(s)	235, 358, 1341, 2254
HindII	GTYRAC	4 cut(s)	235, 358, 1341, 2254
HindIII	AAGCTT	1 cut(s)	1493
HinfI	GANTC	7 cut(s)	94, 257, 461, 977, 1298, 2078, 2255
HpaII	CCGG	3 cut(s)	98, 1050, 1500
HphI	GGTGA	7 cut(s)	117, 305, 652, 1339, 1577, 1718, 1864
Hpy166II	GTNNAC	9 cut(s)	235, 344, 358, 430, 948, 1264, 1341, 1378, 2254
Hpy188III	TCNNGA	9 cut(s)	91, 110, 188, 635, 974, 1064, 2441, 2519, 2590
Hpy8I	GTNNAC	9 cut(s)	235, 344, 358, 430, 948, 1264, 1341, 1378, 2254
Hpy99I	CGWCG	3 cut(s)	147, 168, 1726
HpyAV	CCTTC	8 cut(s)	143, 598, 772, 873, 1155, 1562, 2017, 2608
HpyCH4III	ACNGT	6 cut(s)	62, 318, 1124, 1193, 1749, 1955
HpyCH4IV	ACGT	3 cut(s)	145, 1894, 2385
HpyF3I	CTNAG	8 cut(s)	424, 508, 727, 794, 1257, 2007, 2082, 2117
HpySE526I	ACGT	3 cut(s)	145, 1894, 2385
Hsp92I	GRCGYC	2 cut(s)	1045, 1724
HspAI	GCGC	5 cut(s)	7, 467, 1045, 1688, 1788
KasI	GGCGCC	1 cut(s)	1044
Ksp22I	TGATCA	1 cut(s)	547
LmnI	GCTCC	6 cut(s)	904, 1004, 1034, 1165, 2032, 2197
LweI	GCATC	9 cut(s)	103, 586, 749, 1012, 1147, 1655, 1789, 1855, 2179
MaeI	CTAG	7 cut(s)	1176, 1383, 1589, 1637, 1665, 2352, 2526
MaeII	ACGT	3 cut(s)	145, 1894, 2385
MaeIII	GTNAC	5 cut(s)	2269, 2406, 2438, 2482, 2573
MboII	GAAGA	8 cut(s)	321, 324, 718, 1544, 1643, 1869, 1943, 2480
MfeI	CAATTG	2 cut(s)	824, 1026
MflI	RGATCY	4 cut(s)	419, 637, 908, 2521
MhlI	GDGCHC	5 cut(s)	1380, 1774, 2095, 2420, 2500
MlsI	TGGCCA	1 cut(s)	753
MluNI	TGGCCA	1 cut(s)	753
Mly113I	GGCGCC	1 cut(s)	1045
MlyI	GAGTC	1 cut(s)	2249
MmeI	TCCRAC	2 cut(s)	1106, 1965
Mox20I	TGGCCA	1 cut(s)	753
Mph1103I	ATGCAT	1 cut(s)	2670
MroXI	GAANNNNTTC	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	5 cut(s)	713, 1157, 1205, 2063, 2672
MslI	CAYNNNNRTG	1 cut(s)	1365
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	3 cut(s)	541, 1355, 2560
MspI	CCGG	3 cut(s)	98, 1050, 1500
MunI	CAATTG	2 cut(s)	824, 1026
Mva1269I	GAATGC	2 cut(s)	2282, 2403
MvaI	CCWGG	7 cut(s)	222, 239, 696, 896, 1086, 1580, 2421
MvnI	CGCG	2 cut(s)	9, 1790
NarI	GGCGCC	1 cut(s)	1045
NciI	CCSGG	3 cut(s)	99, 1050, 1501
NheI	GCTAGC	1 cut(s)	1175
NlaIV	GGNNCC	8 cut(s)	16, 387, 421, 900, 1046, 2028, 2418, 2523
NmeAIII	GCCGAG	2 cut(s)	1525, 1764
NmuCI	GTSAC	4 cut(s)	2406, 2438, 2482, 2573
NsiI	ATGCAT	1 cut(s)	2670
NspI	RCATGY	1 cut(s)	2277
NspV	TTCGAA	2 cut(s)	328, 1148
PaeR7I	CTCGAG	1 cut(s)	2588
PceI	AGGCCT	1 cut(s)	1543
PciI	ACATGT	1 cut(s)	2273
PcsI	WCGNNNNNNNCGW	1 cut(s)	1240
PctI	GAATGC	2 cut(s)	2282, 2403
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	6 cut(s)	94, 257, 461, 977, 1298, 2078
PflFI	GACNNNGTC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	2249
PluTI	GGCGCC	1 cut(s)	1048
PpsI	GAGTC	1 cut(s)	2249
Ppu21I	YACGTR	1 cut(s)	2386
PscI	ACATGT	1 cut(s)	2273
PshBI	ATTAAT	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	2328
Psp1406I	AACGTT	1 cut(s)	1894
Psp6I	CCWGG	7 cut(s)	220, 237, 694, 894, 1084, 1578, 2419
PspFI	CCCAGC	2 cut(s)	488, 1351
PspGI	CCWGG	7 cut(s)	220, 237, 694, 894, 1084, 1578, 2419
PspN4I	GGNNCC	8 cut(s)	16, 387, 421, 900, 1046, 2028, 2418, 2523
PspOMI	GGGCCC	1 cut(s)	2416
PstI	CTGCAG	5 cut(s)	499, 540, 1419, 2247, 2406
PsuI	RGATCY	4 cut(s)	419, 637, 908, 2521
PsyI	GACNNNGTC	1 cut(s)	162
PvuII	CAGCTG	2 cut(s)	541, 1355
RsaI	GTAC	4 cut(s)	700, 1695, 1918, 2391
RsaNI	GTAC	4 cut(s)	699, 1694, 1917, 2390
RseI	CAYNNNNRTG	1 cut(s)	1365
SalI	GTCGAC	1 cut(s)	356
SaqAI	TTAA	5 cut(s)	713, 1157, 1205, 2063, 2672
SbfI	CCTGCAGG	1 cut(s)	499
SchI	GAGTC	1 cut(s)	2249
SdaI	CCTGCAGG	1 cut(s)	499
SduI	GDGCHC	5 cut(s)	1380, 1774, 2095, 2420, 2500
SfaNI	GCATC	9 cut(s)	103, 586, 749, 1012, 1147, 1655, 1789, 1855, 2179
SfcI	CTRYAG	6 cut(s)	495, 536, 1415, 1427, 2243, 2402
SfiI	GGCCNNNNNGGCC	1 cut(s)	499
SfoI	GGCGCC	1 cut(s)	1046
Sfr274I	CTCGAG	1 cut(s)	2588
SfuI	TTCGAA	2 cut(s)	328, 1148
SinI	GGWCC	3 cut(s)	689, 2045, 2562
SlaI	CTCGAG	1 cut(s)	2588
SmiMI	CAYNNNNRTG	1 cut(s)	1365
SmlI	CTYRAG	2 cut(s)	2454, 2588
SmoI	CTYRAG	2 cut(s)	2454, 2588
Sse8387I	CCTGCAGG	1 cut(s)	499
SseBI	AGGCCT	1 cut(s)	1543
SsiI	CCGC	5 cut(s)	18, 1042, 1790, 2043, 2560
SspDI	GGCGCC	1 cut(s)	1044
SspMI	CTAG	7 cut(s)	1176, 1383, 1589, 1637, 1665, 2352, 2526
StuI	AGGCCT	1 cut(s)	1543
StyI	CCWWGG	3 cut(s)	668, 744, 2070
TaaI	ACNGT	6 cut(s)	62, 318, 1124, 1193, 1749, 1955
TaiI	ACGT	3 cut(s)	148, 1897, 2388
TauI	GCSGC	1 cut(s)	1045
TfiI	GAWTC	6 cut(s)	94, 257, 461, 977, 1298, 2078
Tru1I	TTAA	5 cut(s)	713, 1157, 1205, 2063, 2672
Tru9I	TTAA	5 cut(s)	713, 1157, 1205, 2063, 2672
TscAI	CASTG	2 cut(s)	1225, 1479
TseFI	GTSAC	4 cut(s)	2406, 2438, 2482, 2573
Tsp45I	GTSAC	4 cut(s)	2406, 2438, 2482, 2573
TspDTI	ATGAA	7 cut(s)	92, 897, 1454, 1619, 1623, 1944, 2721
TspGWI	ACGGA	1 cut(s)	1232
TspRI	CASTG	2 cut(s)	1225, 1479
Tth111I	GACNNNGTC	1 cut(s)	162
VneI	GTGCAC	1 cut(s)	1376
VpaK11BI	GGWCC	3 cut(s)	689, 2045, 2562
VspI	ATTAAT	1 cut(s)	713
XapI	RAATTY	5 cut(s)	1067, 1107, 1280, 2136, 2693
XceI	RCATGY	1 cut(s)	2277
XhoI	CTCGAG	1 cut(s)	2588
XmiI	GTMKAC	3 cut(s)	357, 947, 1263
XmnI	GAANNNNTTC	1 cut(s)	340
XspI	CTAG	7 cut(s)	1176, 1383, 1589, 1637, 1665, 2352, 2526
Zsp2I	ATGCAT	1 cut(s)	2670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.