Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0004844

Physical Location & Seq

Genomic Coordinates Reverse (-)

22708 .. 24360

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

atgattctcatgcaacctgttcctccaatggcctcgttcaatcgtttattaggtggacttgccaagagtaagcactactctcatgttttctcattttgcatcaagttaacatcttctgggttattgcctgatttcattacgcttaatattttgctgaactgcttttgtaatgtgaaacgggtttgtgatgctttggcggctctgggaagtatgattaggaggggttataaaccaagtgctgttacttttacttctttggttaaagggttttgtatggaggataggattgatgaggcactggggttgttggagaaaatgattaagtttcagtgtcagcctactgtgatgacttgtggtactttgattaatgggctgtgcagggctggaaagactagcgtggcacttaggttacatgaggatatgtctaaggggaatggcggattcggtgtttattgtaagccgaatgtggttacttatgggattattatcgataggctttgtaaggatggcatgatagatgaggcaaaagaccttttcttagaaatgaaagatagagggattcttcctgatgtggttgtgtatagtgctctgatacatggtttgtactattatgaaaagtgggaagcgggtaaagctctgttacatgagatggtgcattgcggtatcaagcctaatctcgtgacgttcaatgtgctaatagcggcactttgcagaaggggaaatgtgaaagagagcagtgatttgctaaagcttatggcacacagaggcattagtcctgatttatttacatacaacactttgatagatggcttctctttggtgggttgccttaatgaagcgagagagctgtttcatactatttcaagtagagggtgtcaacctgatgctgttagctacaatgtgttgatcaatggatactgcaagaattggaagatacatgaagctgtcaatgtttatgaggaaatgatccgcagaggagttaggccaactgtagtaacttataatgccttattaactggtctgtttaagttgggaagagttcaggatgcacagaagctgtttgctgagatgcaaactcagaacgtgctacctagttcatctacatataaaatattgttggacaggctttgcaaaaatgattgcataccagaggcaatggaagtatttcatactttagaaaatagcagcagctgtgaacttagtgtagaaatttttaattcacttattaatgggtattgtaaggcacggaagcttgaaattgcttgggacctatatcacaaaatgtcaaaaaaaggcctggtaccagatgttataacatatagcatgatgattcatgggctctgtatggaagggcaactcgaaaaggcaaatggtttgtttttggaaatggaaggaaagggttgtgctccaaacatcatcacttataatacccttatgcgtggtttctgccaaaataataacttggaaaaggttgttgaacttcttcataagatgtcggaaagaaatctgtcaccagataactctacaacctccattgtcatagacttgctctcaaaggatgaaagctatcggaaatgtttggactggcttccaacatttcctgccagtagccaattgaaagctgaggtgacaaatttcaagtcatttgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

550

Amino Acids

61.6

Weight (kDa)

8.32

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	11 - 57	6.1e-06	PPR repeat family
PPR_2	PF13041	43 - 91	8.1e-11	PPR repeat family
PPR_1	PF12854	74 - 106	6.1e-10	PPR repeat
PPR_2	PF13041	78 - 127	3.4e-12	PPR repeat family
PPR	PF01535	81 - 111	3.6e-06	PPR repeat
PPR_1	PF12854	110 - 142	1.6e-07	PPR repeat
PPR_1	PF12854	152 - 183	8e-12	PPR repeat
PPR_2	PF13041	154 - 201	7.7e-16	PPR repeat family
PPR	PF01535	157 - 187	2.6e-08	PPR repeat
PPR_3	PF13812	178 - 236	3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	189 - 238	3.3e-12	PPR repeat family
PPR_1	PF12854	221 - 252	5.3e-09	PPR repeat
PPR_2	PF13041	224 - 271	5.2e-15	PPR repeat family
PPR_3	PF13812	248 - 308	2.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	255 - 285	4.9e-08	PPR repeat
PPR_2	PF13041	263 - 308	8.7e-14	PPR repeat family
PPR_1	PF12854	290 - 322	6.3e-12	PPR repeat
PPR_2	PF13041	294 - 343	1.9e-19	PPR repeat family
PPR	PF01535	297 - 327	2.6e-10	PPR repeat
PPR_3	PF13812	318 - 374	2.1e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	325 - 427	8.7e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	325 - 358	7.9e-10	PPR repeat
PPR_2	PF13041	329 - 378	3.4e-16	PPR repeat family
PPR	PF01535	332 - 361	4.5e-06	PPR repeat
PPR_long	PF17177	368 - 513	1.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	398 - 429	8.1e-07	PPR repeat
PPR_3	PF13812	399 - 444	3.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	402 - 448	8.7e-19	PPR repeat family
PPR	PF01535	404 - 433	1.5e-07	PPR repeat
PPR_3	PF13812	424 - 480	3.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	431 - 464	5.9e-11	PPR repeat
PPR_2	PF13041	435 - 484	5.3e-18	PPR repeat family
PPR	PF01535	438 - 468	1.4e-07	PPR repeat
PPR_3	PF13812	459 - 513	9.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	466 - 499	7.4e-11	PPR repeat
PPR_2	PF13041	470 - 518	8.3e-15	PPR repeat family
PPR	PF01535	473 - 502	6.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22260
malus_domestica	MD05G1203800.v1.1
prunus_persica	Prupe.8G230100_v2.0.a1
pyrus_communis	pycom05g19020
rosa_chinensis	RchiOBHm_Chr6g0289191 RchiOBHm_Chr6g0289221
rosa_laevigata	RLG00000009132 RLG00000009134 RLG00000012320 RLG00000012323 RLG00000012325
rosa_multiflora	Rmu_co8489247.1_g000002 Rmu_sc0001527.1_g000006 Rmu_sc0001527.1_g000010 Rmu_sc0001527.1_g000011
rosa_roxburghii	Rroxscaffold_7G00179440 Rroxscaffold_7G00179500
rosa_rugosa	Rorug06G0201500 Rorug06G0201800 Rorug06G0201900 Rorug06G0202000
rosa_samantha	Rh6AG312700 Rh6AG312900 Rh6BG319700 Rh6BG320300 Rh6BG320400 Rh6CG326100 Rh6CG326400 Rh6DG312100
rosa_wichuraiana	Rw6G027020 Rw6G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	228, 1002, 1313, 1425
Acc65I	GGTACC	1 cut(s)	1300
AccB1I	GGYRCC	1 cut(s)	1300
AciI	CCGC	6 cut(s)	197, 438, 626, 660, 701, 970
AclWI	GGATC	1 cut(s)	961
AcsI	RAATTY	2 cut(s)	1209, 1633
AfaI	GTAC	3 cut(s)	358, 605, 1302
AgsI	TTSAA	7 cut(s)	40, 688, 864, 1256, 1478, 1618, 1639
AjnI	CCWGG	1 cut(s)	1296
Alw21I	GWGCWC	2 cut(s)	589, 1408
AlwI	GGATC	1 cut(s)	961
AlwNI	CAGNNNCTG	2 cut(s)	1057, 1191
AoxI	GGCC	3 cut(s)	30, 983, 1294
ApeKI	GCWGC	2 cut(s)	1185, 1188
ApoI	RAATTY	2 cut(s)	1209, 1633
ArsI	GACNNNNNNTTYG	1 cut(s)	1625
AseI	ATTAAT	2 cut(s)	366, 1227
Asp700I	GAANNNNTTC	2 cut(s)	1164, 1482
Asp718I	GGTACC	1 cut(s)	1300
AspS9I	GGNCC	1 cut(s)	1267
AsuHPI	GGTGA	2 cut(s)	1503, 1639
AvaII	GGWCC	1 cut(s)	1267
BanI	GGYRCC	1 cut(s)	1300
BanII	GRGCYC	1 cut(s)	1341
BauI	CACGAG	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	589, 1408
BbvCI	CCTCAGC	1 cut(s)	1623
BbvI	GCAGC	2 cut(s)	1197, 1200
BccI	CCATC	3 cut(s)	500, 643, 800
BciT130I	CCWGG	1 cut(s)	1298
BciVI	GTATCC	1 cut(s)	908
BclI	TGATCA	1 cut(s)	906
BfaI	CTAG	2 cut(s)	393, 1092
BfmI	CTRYAG	1 cut(s)	990
BfuI	GTATCC	1 cut(s)	908
BisI	GCNGC	4 cut(s)	198, 702, 1186, 1189
BlsI	GCNGC	4 cut(s)	199, 703, 1187, 1190
Bme1390I	CCNGG	1 cut(s)	1298
Bme18I	GGWCC	1 cut(s)	1267
BmgT120I	GGNCC	1 cut(s)	1267
BmiI	GGNNCC	2 cut(s)	1268, 1302
BmrFI	CCNGG	1 cut(s)	1298
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	5 cut(s)	108, 178, 874, 1036, 1059
BmuI	ACTGGG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	1623
Bsa29I	ATCGAT	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	485
Bse1I	ACTGG	4 cut(s)	303, 1021, 1589, 1605
Bse3DI	GCAATG	2 cut(s)	655, 1161
Bse8I	GATNNNNATC	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	1298
BseCI	ATCGAT	1 cut(s)	489
BseGI	GGATG	3 cut(s)	511, 1051, 1564
BseJI	GATNNNNATC	1 cut(s)	485
BseMI	GCAATG	2 cut(s)	655, 1161
BseMII	CTCAG	3 cut(s)	1056, 1091, 1614
BseNI	ACTGG	4 cut(s)	303, 1021, 1589, 1605
BseRI	GAGGAG	1 cut(s)	990
BseXI	GCAGC	2 cut(s)	1197, 1200
BsgI	GTGCAG	1 cut(s)	397
BshFI	GGCC	3 cut(s)	32, 985, 1296
BshNI	GGYRCC	1 cut(s)	1300
BshVI	ATCGAT	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	589, 1408
BslFI	GGGAC	1 cut(s)	1280
BsmFI	GGGAC	1 cut(s)	1280
BsnI	GGCC	3 cut(s)	32, 985, 1296
Bsp1286I	GDGCHC	3 cut(s)	589, 1341, 1408
Bsp143I	GATC	2 cut(s)	906, 966
BspACI	CCGC	6 cut(s)	197, 438, 626, 660, 701, 970
BspANI	GGCC	3 cut(s)	32, 985, 1296
BspCNI	CTCAG	3 cut(s)	1057, 1090, 1615
BspDI	ATCGAT	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	1268, 1302
BspPI	GGATC	1 cut(s)	961
BspT107I	GGYRCC	1 cut(s)	1300
BsrDI	GCAATG	2 cut(s)	655, 1161
BsrI	ACTGG	4 cut(s)	303, 1021, 1589, 1605
BssMI	GATC	2 cut(s)	906, 966
BssSI	CACGAG	1 cut(s)	677
Bst2BI	CACGAG	1 cut(s)	677
Bst2UI	CCWGG	1 cut(s)	1298
Bst4CI	ACNGT	2 cut(s)	343, 991
Bst6I	CTCTTC	1 cut(s)	1030
BstDEI	CTNAG	7 cut(s)	404, 426, 538, 1065, 1077, 1199, 1623
BstF5I	GGATG	3 cut(s)	511, 1051, 1564
BstKTI	GATC	2 cut(s)	909, 969
BstMBI	GATC	2 cut(s)	906, 966
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 632
BstNI	CCWGG	1 cut(s)	1298
BstSCI	CCNGG	1 cut(s)	1296
BstSFI	CTRYAG	1 cut(s)	990
BstV1I	GCAGC	2 cut(s)	1197, 1200
Bsu15I	ATCGAT	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	908
BsuRI	GGCC	3 cut(s)	32, 985, 1296
BsuTUI	ATCGAT	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	511, 1051, 1564
BtsI	GCAGTG	1 cut(s)	742
BtsIMutI	CAGTG	3 cut(s)	296, 335, 742
CaiI	CAGNNNCTG	2 cut(s)	1057, 1191
Cfr13I	GGNCC	1 cut(s)	1267
ClaI	ATCGAT	1 cut(s)	489
Csp6I	GTAC	3 cut(s)	357, 604, 1301
CviQI	GTAC	3 cut(s)	357, 604, 1301
DdeI	CTNAG	7 cut(s)	404, 426, 538, 1065, 1077, 1199, 1623
DpnI	GATC	2 cut(s)	908, 968
DpnII	GATC	2 cut(s)	906, 966
Eam1104I	CTCTTC	1 cut(s)	1030
EarI	CTCTTC	1 cut(s)	1030
EciI	GGCGGA	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	1296
Eco24I	GRGCYC	1 cut(s)	1341
Eco47I	GGWCC	1 cut(s)	1267
EcoO109I	RGGNCCY	1 cut(s)	1267
EcoRII	CCWGG	1 cut(s)	1296
EcoT38I	GRGCYC	1 cut(s)	1341
FaqI	GGGAC	1 cut(s)	1280
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	906
Fnu4HI	GCNGC	4 cut(s)	198, 702, 1186, 1189
FokI	GGATG	3 cut(s)	518, 1058, 1571
FriOI	GRGCYC	1 cut(s)	1341
Fsp4HI	GCNGC	4 cut(s)	198, 702, 1186, 1189
FspBI	CTAG	2 cut(s)	393, 1092
GluI	GCNGC	4 cut(s)	198, 702, 1186, 1189
HaeIII	GGCC	3 cut(s)	32, 985, 1296
HincII	GTYRAC	2 cut(s)	108, 878
HindII	GTYRAC	2 cut(s)	108, 878
HindIII	AAGCTT	2 cut(s)	749, 1250
HinfI	GANTC	4 cut(s)	4, 441, 559, 1330
HpaI	GTTAAC	1 cut(s)	108
HphI	GGTGA	2 cut(s)	1503, 1639
Hpy166II	GTNNAC	4 cut(s)	56, 108, 878, 1196
Hpy188I	TCNGA	4 cut(s)	591, 1080, 1498, 1572
Hpy188III	TCNNGA	4 cut(s)	566, 679, 776, 1043
Hpy8I	GTNNAC	4 cut(s)	56, 108, 878, 1196
HpyAV	CCTTC	3 cut(s)	708, 1343, 1385
HpyCH4III	ACNGT	2 cut(s)	343, 991
HpyCH4IV	ACGT	2 cut(s)	683, 1083
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 632
HpyF3I	CTNAG	7 cut(s)	404, 426, 538, 1065, 1077, 1199, 1623
HpySE526I	ACGT	2 cut(s)	683, 1083
KpnI	GGTACC	1 cut(s)	1304
Ksp22I	TGATCA	1 cut(s)	906
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	906, 966
LmnI	GCTCC	1 cut(s)	1411
Lsp1109I	GCAGC	2 cut(s)	1197, 1200
LweI	GCATC	5 cut(s)	108, 178, 874, 1036, 1059
MaeI	CTAG	2 cut(s)	393, 1092
MaeII	ACGT	2 cut(s)	683, 1083
MaeIII	GTNAC	8 cut(s)	241, 408, 469, 639, 679, 994, 1509, 1627
MalI	GATC	2 cut(s)	908, 968
MboI	GATC	2 cut(s)	906, 966
MboII	GAAGA	5 cut(s)	105, 554, 943, 1047, 1475
MfeI	CAATTG	1 cut(s)	1613
MhlI	GDGCHC	3 cut(s)	589, 1341, 1408
MluCI	AATT	6 cut(s)	925, 1209, 1216, 1257, 1613, 1633
MmeI	TCCRAC	4 cut(s)	288, 1098, 1476, 1616
MroXI	GAANNNNTTC	2 cut(s)	1164, 1482
MslI	CAYNNNNRTG	1 cut(s)	1648
MspA1I	CMGCKG	1 cut(s)	1191
MspR9I	CCNGG	1 cut(s)	1298
MunI	CAATTG	1 cut(s)	1613
MvaI	CCWGG	1 cut(s)	1298
MwoI	GCNNNNNNNGC	2 cut(s)	197, 632
NdeII	GATC	2 cut(s)	906, 966
NlaIV	GGNNCC	2 cut(s)	1268, 1302
NmuCI	GTSAC	3 cut(s)	679, 1509, 1627
PceI	AGGCCT	1 cut(s)	1296
PdmI	GAANNNNTTC	2 cut(s)	1164, 1482
PfeI	GAWTC	4 cut(s)	4, 441, 559, 1330
PkrI	GCNGC	4 cut(s)	199, 703, 1187, 1190
PpuMI	RGGWCCY	1 cut(s)	1267
PshBI	ATTAAT	2 cut(s)	366, 1227
PsiI	TTATAA	4 cut(s)	228, 1002, 1313, 1425
Psp5II	RGGWCCY	1 cut(s)	1267
Psp6I	CCWGG	1 cut(s)	1296
PspGI	CCWGG	1 cut(s)	1296
PspN4I	GGNNCC	2 cut(s)	1268, 1302
PspPI	GGNCC	1 cut(s)	1267
PspPPI	RGGWCCY	1 cut(s)	1267
PstNI	CAGNNNCTG	2 cut(s)	1057, 1191
PvuII	CAGCTG	1 cut(s)	1191
RsaI	GTAC	3 cut(s)	358, 605, 1302
RsaNI	GTAC	3 cut(s)	357, 604, 1301
RseI	CAYNNNNRTG	1 cut(s)	1648
SatI	GCNGC	4 cut(s)	198, 702, 1186, 1189
Sau3AI	GATC	2 cut(s)	906, 966
Sau96I	GGNCC	1 cut(s)	1267
ScrFI	CCNGG	1 cut(s)	1298
SduI	GDGCHC	3 cut(s)	589, 1341, 1408
SfaNI	GCATC	5 cut(s)	108, 178, 874, 1036, 1059
SfcI	CTRYAG	1 cut(s)	990
SinI	GGWCC	1 cut(s)	1267
SmiMI	CAYNNNNRTG	1 cut(s)	1648
Sse9I	AATT	6 cut(s)	925, 1209, 1216, 1257, 1613, 1633
SseBI	AGGCCT	1 cut(s)	1296
SsiI	CCGC	6 cut(s)	197, 438, 626, 660, 701, 970
SspI	AATATT	2 cut(s)	148, 1113
SspMI	CTAG	2 cut(s)	393, 1092
StuI	AGGCCT	1 cut(s)	1296
StyD4I	CCNGG	1 cut(s)	1296
TaaI	ACNGT	2 cut(s)	343, 991
TaiI	ACGT	2 cut(s)	686, 1086
TaqI	TCGA	2 cut(s)	489, 1359
TasI	AATT	6 cut(s)	925, 1209, 1216, 1257, 1613, 1633
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	2 cut(s)	200, 704
TfiI	GAWTC	4 cut(s)	4, 441, 559, 1330
TscAI	CASTG	3 cut(s)	303, 335, 742
TseFI	GTSAC	3 cut(s)	679, 1509, 1627
TseI	GCWGC	2 cut(s)	1185, 1188
Tsp45I	GTSAC	3 cut(s)	679, 1509, 1627
TspGWI	ACGGA	1 cut(s)	1261
TspRI	CASTG	3 cut(s)	303, 335, 742
VpaK11BI	GGWCC	1 cut(s)	1267
VspI	ATTAAT	2 cut(s)	366, 1227
XapI	RAATTY	2 cut(s)	1209, 1633
XmnI	GAANNNNTTC	2 cut(s)	1164, 1482
XspI	CTAG	2 cut(s)	393, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.