Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001665.1

Orthogroup ID

OG0002833

Physical Location & Seq

Genomic Coordinates Reverse (-)

190389 .. 191072

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggccatcaccacaacctcctcatctctctcttccctctcctcactctccctctccctcaactcttctcctcaccattccctcctcctccgtttcaccacttccttccccaagcccacaaaacccatctctctcttcctctcctctccacgacccaccctccccatccccaatgccgaaccaccccacaccgaaaccaccttcttctccaccgacgaccccgaatgcgacgccgccttcgaccccccggagcccccggaaggcttcgtcccgccgccctccttcgacgacgagccgttggagacagaggagcaaatcgccaaagcgtacgaggagctctacgggccggcctacagcggcgtcagcgttctgggcaatgacgtgtacgtgatggactcgaaggtgagaaagttgggtgcttttgggaaagtgaagaaggagaagattcgagatgggtttgaggagagagtggtggaggtgaggagagtgaccaaggttgtgaaaggagggaagcaattgcatttcagggttatagtggtggtgggtgacaagagaggttgtgtgggtgtgggtgtgggcaaggctaaggaggttattgatggggttcagaaggctgctgtcaatgctaggaggaacattgtcactgtccccatgaccaagtacttgacttttcctcataggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003002 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009955 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0031974 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032544 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0048856 GO:0050896 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098798 GO:1901259 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

227

Amino Acids

24.82

Weight (kDa)

8.45

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	153 - 217	5.3e-23	Ribosomal protein S5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33800
fragaria_vesca	FvH4_2g34180 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970 FvH4_3g08970
malus_domestica	MD00G1115700.v1.1 MD10G1292500.v1.1
prunus_persica	Prupe.4G049400_v2.0.a1
pyrus_communis	pycom05g28910 pycom10g24460
rosa_chinensis	RchiOBHm_Chr5g0008741
rosa_laevigata	RLG00000031598 RLG00000031599
rosa_multiflora	Rmu_sc0001665.1_g000044 Rmu_sc0001665.1_g000045 Rmu_sc0001665.1_g000046 Rmu_sc0001665.1_g000047 Rmu_sc0007562.1_g000001 Rmu_sc0007563.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067240 Rroxscaffold_1G00067260 Rroxscaffold_1G00067840 Rroxscaffold_1G00067850
rosa_rugosa	Rorug04G0438300 Rorug04G0438400 Rorug04G0438500 Rorug04G0438600 Rorug04G0438700 Rorug04G0438800
rosa_samantha	Rh5AG067000 Rh5AG067100 Rh5BG064100 Rh5CG074500 Rh5CG074600 Rh5DG061900 Rh5DG062200
rosa_wichuraiana	Rw5G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	234, 272, 275, 357
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	231, 360
AfaI	GTAC	3 cut(s)	329, 386, 662
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	382
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	3 cut(s)	3, 344, 348
ApeKI	GCWGC	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	2 cut(s)	248, 257
AsuHPI	GGTGA	5 cut(s)	65, 88, 415, 490, 557
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	255, 339
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	6 cut(s)	14, 134, 173, 385, 446, 593
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	2 cut(s)	248, 257
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	4 cut(s)	234, 275, 358, 615
BlsI	GCNGC	4 cut(s)	235, 276, 359, 616
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	248, 257
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	2 cut(s)	248, 257
Bpu10I	CCTNAGC	1 cut(s)	585
BpuMI	CCSGG	2 cut(s)	248, 257
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	2 cut(s)	231, 360
BsaJI	CCNNGG	3 cut(s)	246, 255, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	246, 255, 492
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	601
BshFI	GGCC	3 cut(s)	5, 346, 350
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	248, 257, 347
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	254, 632
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	254, 632
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	5, 346, 350
Bsp1286I	GDGCHC	2 cut(s)	255, 339
BspACI	CCGC	4 cut(s)	234, 272, 275, 357
BspANI	GGCC	3 cut(s)	5, 346, 350
BspLI	GGNNCC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	246, 255, 492
BssNI	GRCGYC	2 cut(s)	231, 360
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	3 cut(s)	37, 70, 140
BstACI	GRCGYC	2 cut(s)	231, 360
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	4 cut(s)	343, 363, 372, 623
BstSCI	CCNGG	2 cut(s)	246, 255
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	601
BsuRI	GGCC	3 cut(s)	5, 346, 350
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	2 cut(s)	239, 349
Csp6I	GTAC	3 cut(s)	328, 385, 661
CviAII	CATG	1 cut(s)	652
CviQI	GTAC	3 cut(s)	328, 385, 661
DdeI	CTNAG	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	37, 70, 140
EarI	CTCTTC	3 cut(s)	37, 70, 140
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	2 cut(s)	255, 339
Eco53kI	GAGCTC	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	2 cut(s)	255, 339
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	1 cut(s)	655
FaiI	YATR	3 cut(s)	533, 653, 678
FaqI	GGGAC	2 cut(s)	254, 632
FatI	CATG	1 cut(s)	651
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	234, 275, 358, 615
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	255, 339
FseI	GGCCGGCC	1 cut(s)	350
Fsp4HI	GCNGC	4 cut(s)	234, 275, 358, 615
FspBI	CTAG	1 cut(s)	627
GluI	GCNGC	4 cut(s)	234, 275, 358, 615
HaeIII	GGCC	3 cut(s)	5, 346, 350
HapII	CCGG	3 cut(s)	248, 257, 347
HgaI	GACGC	2 cut(s)	239, 349
Hin1I	GRCGYC	2 cut(s)	231, 360
Hin1II	CATG	1 cut(s)	655
HinfI	GANTC	2 cut(s)	395, 445
HpaII	CCGG	3 cut(s)	248, 257, 347
HphI	GGTGA	5 cut(s)	65, 88, 415, 490, 557
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	4 cut(s)	218, 233, 290, 293
HpyAV	CCTTC	8 cut(s)	115, 211, 247, 254, 292, 394, 430, 604
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	2 cut(s)	381, 387
HpyCH4V	TGCA	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	343, 363, 372, 623
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	2 cut(s)	381, 387
Hsp92I	GRCGYC	2 cut(s)	231, 360
Hsp92II	CATG	1 cut(s)	655
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
LmnI	GCTCC	3 cut(s)	250, 310, 334
LpnPI	CCDG	5 cut(s)	261, 270, 356, 360, 511
Lsp1109I	GCAGC	1 cut(s)	601
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	2 cut(s)	381, 387
MaeIII	GTNAC	3 cut(s)	487, 545, 640
MboII	GAAGA	6 cut(s)	24, 57, 127, 196, 445, 454
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	255, 339
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	515
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	279
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	3 cut(s)	248, 257, 347
MspR9I	CCNGG	2 cut(s)	248, 257
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	343, 363, 372, 623
NaeI	GCCGGC	1 cut(s)	348
NciI	CCSGG	2 cut(s)	248, 257
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	3 cut(s)	487, 545, 640
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	445
Pfl23II	CGTACG	1 cut(s)	327
PkrI	GCNGC	4 cut(s)	235, 276, 359, 616
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Ppu21I	YACGTR	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	339
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	344
RigI	GGCCGGCC	1 cut(s)	350
RsaI	GTAC	3 cut(s)	329, 386, 662
RsaNI	GTAC	3 cut(s)	328, 385, 661
SacI	GAGCTC	1 cut(s)	339
SatI	GCNGC	4 cut(s)	234, 275, 358, 615
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	248, 257
SduI	GDGCHC	2 cut(s)	255, 339
SfcI	CTRYAG	1 cut(s)	352
Sse9I	AATT	1 cut(s)	515
SsiI	CCGC	4 cut(s)	234, 272, 275, 357
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	246, 255
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	2 cut(s)	384, 390
TaqI	TCGA	4 cut(s)	240, 285, 398, 448
TasI	AATT	1 cut(s)	515
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	3 cut(s)	236, 277, 360
TfiI	GAWTC	1 cut(s)	445
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	3 cut(s)	487, 545, 640
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	3 cut(s)	487, 545, 640
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	649
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.