Rmu_sc0002112.1_g000012

BURP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002112.1
OG0007143
Physical Location & Seq
Reverse (-)
38951 .. 40051
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
atgggttcaagtcttgctttctggtgccccttacttcatcttcttctactagtgctggttatgtgtgctcaaggaattgcgggcaggaagctgactgaggaacagctggaaacaacacacaaattgatgaagcctatggatcaaagaattcaagctcatcattcatcatcccacatggatcacatggacccttcacatatgattttcttcaccatcaaggacttgaaagttgggaaaacaatgccaatctatttccgaaaaagagacccttcaaaatctcctcgctttataccaagatctcaagctgattcaattcctttctcatcaaaacaactcccccacctccttgagttcttctctttctccaaagattctcaccaagccaaagccatggaagacactattgggcaatgtgagattgaacccatcaaaggagaaaccaagttctgtcccacttccttagaatccatgctggatttcactcgtagtatgttgggaccaaacacccgtttcactgctgtagccactgcccatctcacaaattcaactaccctgttccagaattataccattttgaaagagcctaaagagatctttgctccaaagatggtggcatgtcacaatatgccttacccttatgcagttttctattgccatagccaacaaagtgtgaacaaggtgtacaaagttgaattagggggtgaagatggagatagagttgacgctgttgctgtctgccacttggatacttctgattggagccctgatcatgcatcgttcagtgtgctcaggatcaagcctgggacttctcctgtgtgccatttctttcctgctgataatcttgtatgggttccaacatcaacctcagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BURP

Protein Analysis

290

Amino Acids

32.72

Weight (kDa)

7.24

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BURP PF03181 68 - 285 1.1e-84 BURP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 24
AciI CCGC 1 cut(s) 80
AclWI GGATC 3 cut(s) 147, 186, 800
AcsI RAATTY 2 cut(s) 147, 541
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 9 cut(s) 9, 152, 226, 273, 312, 422, 546, 577, 692
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 799
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 4 cut(s) 91, 106, 155, 305
AluI AGCT 4 cut(s) 91, 106, 155, 305
Alw21I GWGCWC 2 cut(s) 70, 789
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 3 cut(s) 147, 186, 800
ApoI RAATTY 2 cut(s) 147, 541
AspS9I GGNCC 2 cut(s) 187, 497
AsuHPI GGTGA 3 cut(s) 202, 368, 713
AvaII GGWCC 2 cut(s) 187, 497
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 70, 789
BccI CCATC 5 cut(s) 221, 434, 540, 601, 701
BciT130I CCWGG 1 cut(s) 801
BciVI GTATCC 1 cut(s) 739
BclI TGATCA 1 cut(s) 766
BcoDI GTCTC 1 cut(s) 258
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 519
BfuI GTATCC 1 cut(s) 739
BglII AGATCT 2 cut(s) 296, 591
Bme1390I CCNGG 1 cut(s) 801
Bme18I GGWCC 2 cut(s) 187, 497
BmgT120I GGNCC 2 cut(s) 187, 497
BmiI GGNNCC 5 cut(s) 26, 189, 498, 761, 852
BmrFI CCNGG 1 cut(s) 801
BmsI GCATC 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 341, 373
Bpu10I CCTNAGC 1 cut(s) 788
BpuEI CTTGAG 3 cut(s) 54, 285, 368
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 390, 800
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 390, 800
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 87, 802
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 70, 789
BslFI GGGAC 3 cut(s) 435, 510, 817
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 3 cut(s) 435, 510, 817
Bso31I GGTCTC 1 cut(s) 258
Bsp1286I GDGCHC 4 cut(s) 29, 70, 764, 789
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 6 cut(s) 139, 178, 296, 591, 766, 792
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 88, 801
BspLI GGNNCC 5 cut(s) 26, 189, 498, 761, 852
BspPI GGATC 3 cut(s) 147, 186, 800
BspT107I GGYRCC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 416
BsrGI TGTACA 1 cut(s) 681
BssECI CCNNGG 2 cut(s) 390, 800
BssMI GATC 6 cut(s) 139, 178, 296, 591, 766, 792
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 801
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 96, 460, 788, 865
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 6 cut(s) 142, 181, 299, 594, 769, 795
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 6 cut(s) 139, 178, 296, 591, 766, 792
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 1 cut(s) 799
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 2 cut(s) 296, 591
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 2 cut(s) 296, 591
BsuI GTATCC 1 cut(s) 739
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 2 cut(s) 513, 525
BtsIMutI CAGTG 4 cut(s) 513, 525, 787, 873
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 187, 497
CseI GACGC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 682
CspCI CAANNNNNGTGG 2 cut(s) 591, 626
CviAII CATG 6 cut(s) 175, 184, 391, 469, 615, 770
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 4 cut(s) 96, 460, 788, 865
DpnI GATC 6 cut(s) 141, 180, 298, 593, 768, 794
DpnII GATC 6 cut(s) 139, 178, 296, 591, 766, 792
Eco130I CCWWGG 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 187, 497
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 775
EcoT38I GRGCYC 1 cut(s) 764
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 6 cut(s) 178, 187, 394, 472, 618, 773
FalI AAGNNNNNCTT 3 cut(s) 33, 253, 285
FaqI GGGAC 3 cut(s) 435, 510, 817
FatI CATG 6 cut(s) 174, 183, 390, 468, 614, 769
FauI CCCGC 1 cut(s) 73
FauNDI CATATG 1 cut(s) 198
FbaI TGATCA 1 cut(s) 766
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 764
FspBI CTAG 1 cut(s) 50
HgaI GACGC 1 cut(s) 731
Hin1II CATG 6 cut(s) 178, 187, 394, 472, 618, 773
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 3 cut(s) 308, 371, 464
HphI GGTGA 3 cut(s) 202, 368, 713
Hpy166II GTNNAC 3 cut(s) 673, 682, 721
Hpy188I TCNGA 2 cut(s) 257, 754
Hpy188III TCNNGA 2 cut(s) 559, 790
Hpy8I GTNNAC 3 cut(s) 673, 682, 721
HpyAV CCTTC 2 cut(s) 201, 279
HpyCH4V TGCA 2 cut(s) 641, 773
HpyF3I CTNAG 4 cut(s) 96, 460, 788, 865
Hsp92II CATG 6 cut(s) 178, 187, 394, 472, 618, 773
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 6 cut(s) 139, 178, 296, 591, 766, 792
LmnI GCTCC 2 cut(s) 604, 759
LweI GCATC 1 cut(s) 782
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 617
MalI GATC 6 cut(s) 141, 180, 298, 593, 768, 794
MboI GATC 6 cut(s) 139, 178, 296, 591, 766, 792
MboII GAAGA 6 cut(s) 32, 35, 199, 346, 407, 716
MflI RGATCY 2 cut(s) 296, 591
MhlI GDGCHC 4 cut(s) 29, 70, 764, 789
MluCI AATT 7 cut(s) 75, 122, 147, 312, 541, 562, 692
MnlI CCTC 3 cut(s) 91, 291, 353
Mph1103I ATGCAT 1 cut(s) 775
MspA1I CMGCKG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 801
MvaI CCWGG 1 cut(s) 801
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 198
NdeII GATC 6 cut(s) 139, 178, 296, 591, 766, 792
NlaIII CATG 6 cut(s) 178, 187, 394, 472, 618, 773
NlaIV GGNNCC 5 cut(s) 26, 189, 498, 761, 852
NmuCI GTSAC 1 cut(s) 617
NsiI ATGCAT 1 cut(s) 775
NspI RCATGY 1 cut(s) 618
PfeI GAWTC 3 cut(s) 308, 371, 464
Psp6I CCWGG 1 cut(s) 799
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 5 cut(s) 26, 189, 498, 761, 852
PspPI GGNCC 2 cut(s) 187, 497
PsrI GAACNNNNNNTAC 2 cut(s) 665, 697
PsuI RGATCY 2 cut(s) 296, 591
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
Sau3AI GATC 6 cut(s) 139, 178, 296, 591, 766, 792
Sau96I GGNCC 2 cut(s) 187, 497
ScrFI CCNGG 1 cut(s) 801
SduI GDGCHC 4 cut(s) 29, 70, 764, 789
SetI ASST 7 cut(s) 93, 108, 157, 307, 345, 681, 866
SfaNI GCATC 1 cut(s) 782
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 187, 497
SmlI CTYRAG 3 cut(s) 69, 300, 347
SmoI CTYRAG 3 cut(s) 69, 300, 347
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 7 cut(s) 75, 122, 147, 312, 541, 562, 692
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 799
StyI CCWWGG 1 cut(s) 390
TasI AATT 7 cut(s) 75, 122, 147, 312, 541, 562, 692
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 3 cut(s) 308, 371, 464
TscAI CASTG 4 cut(s) 520, 532, 787, 873
TseFI GTSAC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 3 cut(s) 26, 143, 153
TspRI CASTG 4 cut(s) 520, 532, 787, 873
VpaK11BI GGWCC 2 cut(s) 187, 497
XapI RAATTY 2 cut(s) 147, 541
XceI RCATGY 1 cut(s) 618
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.