Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002117.1

Orthogroup ID

OG0007030

Physical Location & Seq

Genomic Coordinates Reverse (-)

169670 .. 178161

Gene Structure 8492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3324 bp

atgtcgcggacggataggatggcttctgatcttagcaggaccgccggtccggtcgaaagagacatcgagcaggccattactgctttaaagaaaggagcatacttgctcaagtacggaagaaggggaaagcccaagttctgccccttccgcctttctaatgatgagtccgttctaatatggttctcagggaaggaggaaaaacaccttaaactcagccatgtttctagaattatatccgggcaacgcactccaatctttcagaggtatccacggcctgaaaaggagtatcagtcattttctcttatttataatgatagatcactggatttgatttgcaaggataaagatgaagctgaggtatggttcagtggtttaaaagcattaatatcacgcagccaccatcgaaaatggagaacagagtcaaggagcgatggaattccatctgaagcaaatagtccgagaacttatacacggagaagttctcctctgaattctccatttgggagtaatgatagcatacagaaggatggtgcagatcaccttcgccttcatagtccatttgaaagtccgcctaaaaatggtctggataaggcactatcagatgtgatactatatgctgtccctcccaagggttttttcccttcagattcagctagtggttcagtacattctgtgtcatcaggaggctcggaaagtgtacacggtcagatgaaggcagtggatgcatttagagttagtctatccagtgctgttagctcatcaagccaaggttctggtcatgatgatggtgatgccttaggagatgttttcatttggggggaaggcacaggagatggtgttgttggtggtggttctcatagagttggaagtagttttgctgccaaaatggattctttattgcctaaacctttagaatctgcagtggtactcgacgtccaaaacattgcctgtggtggacgacatgcagctctagtaaccaagcaaggagagattttttcttggggagaggaatctgggggcaggcttgggcatggtgtagatgttgatgttttgcatccaaagcttattgatgccctcagtaatgtgaacattgagcttgttgcttgtggtgagtaccatacaagtgctgtaaccttttccggtgatctgtacacatggggtgatggcacttacaattttggtctacttgggcacggaaatgaagtgagtcactgggttcccaaaagagtaaatgggcccttggagggtatacatgtctcatctatatcttgtggaccctggcacacagctgttgtaacctctgccgggcaattgtttacttttggtgatggcacatttggtgttctaggacatggagataggaaaagtgtttcaattcccagggaagtggaatcccttaagggtcttcgcactgtgcaagcagcttgtggggtgtggcatactgctgctgttgtagaagtcatggttggcaattcaagttcgagcaactgttctttaggaaagttgttcacctggggagatggcgataaaggtcggcttgggcatggtgacaaggaagcaaaacttgtgcctacctgtgttgcagctcttgtcgatcccaacttttgtcaagttgcttgtggacatagtatgacagttgctcttactacatctggccatgtatacacaatgggcagtcctgtttatggccagttaggaaaccctcaagctgatggaaagctccccagtagggttgagggaaagctcttcaagagttttgtggaagaaatttcttgtggtgcctatcatgttgcagttttaacttcaagaactgaggtttatacatggggaaaaggagcaaatggtcgtttaggtcatgggaacattgatgatcgtaattctcctacattagttgaagctctgaaagataagcaagtcaaaagtattgcctgtggtgctaattttactgcagctatctgccttcataaatgggtttctggagttgaccaatcaatgtgttcaggctgccgccttccattcaattttaaaagaaaacgccataattgttataattgtggtcttgttttctgtcattcttgcagcagtaagaagtcactcaaggcttctatggccccaaatcccaacaaaccgtatcgtgtctgtgacaattgttttagtaaactgagaaaagctatagaaactgatcattcatcccagtcttctgtgagcagaagaggaagtatcaatcagggctcaagtgacagcattgataaagacgataaattggattccagatctcgtgtgcaacttgctagattttcttctatggaatctctgaagaatgtggaaacacgttcttcaaagaaaaataagaaactagaattcaatagtagtcgagtctcgcctgttccaaatggaggttcgcagtggggagctcttaatatttctaaatcatttaatccagtatttgggtcttccaagaagttcttctctgcttctgttcctggatccagaattgtttctagagcaacatcccccatttctaggcgccccagcccacctcgttctacaacaccaactccaactctaggaggacttacatcaccaaagattgctgtagatgatagtgctaaaaggaccaatgaaagccttagccaggaggttatcaagctaagagcacaggttgaaagtcttgctcgaaaatcccaactacaggaagtggagctggaaagaacaactaaacagctgaaagatgcaatagcaattgcagatgcagagactgcaaaatgcaaagctgcaaaggaagtaatccagtcactgactgcacaattgaaggacatggctgaaagactgcctgttggagcagcacggaatatcaaatcactctctcttacttctttgggttctgatcctcccaatgaagtttctggtgcttctattgatcaattgaatggtcaagcaacatgccaaggaccagactccaatggatcaaacagccagttgctttctaatggatccagtaccaccagtaaccgcagttcaggtcacaacaaacaggggaattcagacttggcgactagaaatgggaacagaaccaaagaaagtgaatcttgtaatgagactgaatgggttgagcaagatgaggctggtgtatatattacacttacttccctaccaggaggtgtcaaggatctcaagagagttcgcttcagtcgtaagcgatttagtgagaaacaagcagaacagtggtgggcagagaaccgggcaagagtatatgaacaatacaatgtgcgtatggtagacaagtctagtgtaggtgttgggagtgtagacttggctcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1107

Amino Acids

119.53

Weight (kDa)

9.11

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	23 - 129	2e-09	Pleckstrin homology domain
WD40_RLD	PF25390	268 - 651	6e-80	RCC1-like domain
RCC1	PF00415	328 - 377	6.9e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	366 - 391	1e-05	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	380 - 432	5.4e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	419 - 447	8e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	436 - 484	1.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	500 - 548	7.1e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	536 - 564	7.5e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	551 - 600	6.5e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	605 - 652	4.2e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	656 - 722	1.8e-15	FYVE zinc finger
BRX_N	PF13713	919 - 953	1.8e-14	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	959 - 1027	8.2e-25	Unstructured region between BRX_N and BRX domain
BRX	PF08381	1033 - 1088	1.8e-28	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42680
fragaria_vesca	FvH4_2g19022 FvH4_3g28000 FvH4_3g28000 FvH4_3g28000 FvH4_5g11302 FvH4_5g34171 FvH4_6g23262
malus_domestica	MD03G1167700.v1.1 MD11G1186800.v1.1
prunus_persica	Prupe.4G268000_v2.0.a1
pyrus_communis	pycom03g12290 pycom03g12300 pycom11g16130 pycom11g16140
rosa_chinensis	RchiOBHm_Chr5g0050701
rosa_laevigata	RLG00000034724
rosa_multiflora	Rmu_sc0002117.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030080
rosa_rugosa	Rorug05G0263200
rosa_samantha	Rh5AG335200 Rh5BG344400 Rh5CG372500 Rh5DG357600
rosa_wichuraiana	Rw5G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	309, 2049
AatII	GACGTC	1 cut(s)	936
AccB1I	GGYRCC	2 cut(s)	1778, 2526
AccB7I	CCANNNNNTGG	1 cut(s)	2447
AccI	GTMKAC	5 cut(s)	1183, 1249, 1662, 3279, 3309
AccII	CGCG	1 cut(s)	7
AciI	CCGC	6 cut(s)	7, 42, 148, 569, 2008, 3013
AclWI	GGATC	8 cut(s)	1589, 2481, 2494, 2882, 2974, 2988, 3001, 3177
AcoI	YGGCCR	2 cut(s)	1654, 1687
AcsI	RAATTY	5 cut(s)	435, 490, 1767, 2360, 3040
AcuI	CTGAAG	4 cut(s)	465, 627, 2336, 3172
AcyI	GRCGYC	2 cut(s)	933, 2527
AfaI	GTAC	7 cut(s)	113, 666, 699, 927, 1115, 1151, 3001
AflII	CTTAAG	1 cut(s)	1397
AflIII	ACRYGT	2 cut(s)	1252, 2330
AhdI	GACNNNNNGTC	1 cut(s)	45
AjnI	CCWGG	6 cut(s)	1277, 1379, 1511, 2482, 2634, 3154
Alw21I	GWGCWC	2 cut(s)	2416, 2659
Alw26I	GTCTC	5 cut(s)	54, 1261, 2383, 2750, 3092
AlwI	GGATC	8 cut(s)	1589, 2481, 2494, 2882, 2974, 2988, 3001, 3177
AlwNI	CAGNNNCTG	2 cut(s)	2759, 2797
AoxI	GGCC	6 cut(s)	72, 272, 1235, 1654, 1687, 2109
ApaI	GGGCCC	1 cut(s)	1239
ApoI	RAATTY	5 cut(s)	435, 490, 1767, 2360, 3040
AseI	ATTAAT	1 cut(s)	383
Asp700I	GAANNNNTTC	2 cut(s)	2465, 2497
AspLEI	GCGC	1 cut(s)	2529
AspS9I	GGNCC	8 cut(s)	39, 47, 1235, 1236, 1274, 2110, 2616, 2951
AsuC2I	CCSGG	3 cut(s)	238, 1306, 3242
AsuHPI	GGTGA	9 cut(s)	530, 800, 1121, 1154, 1172, 1337, 1501, 1559, 2574
AvaII	GGWCC	5 cut(s)	39, 47, 1274, 2616, 2951
AxyI	CCTNAGG	1 cut(s)	796
BaeGI	GKGCMC	2 cut(s)	1194, 1239
BalI	TGGCCA	2 cut(s)	1656, 1689
BamHI	GGATCC	2 cut(s)	2486, 2993
BanI	GGYRCC	2 cut(s)	1778, 2526
BanII	GRGCYC	3 cut(s)	1239, 2234, 2416
BauI	CACGAG	1 cut(s)	2277
BbsI	GAAGAC	3 cut(s)	1397, 2190, 2445
Bbv12I	GWGCWC	2 cut(s)	2416, 2659
BbvCI	CCTCAGC	1 cut(s)	354
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	6 cut(s)	1279, 1381, 1513, 2484, 2636, 3156
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	2 cut(s)	2182, 2920
BcnI	CCSGG	3 cut(s)	238, 1306, 3242
BcoDI	GTCTC	5 cut(s)	54, 1261, 2383, 2750, 3092
BfmI	CTRYAG	5 cut(s)	918, 1947, 2172, 2595, 2690
BfoI	RGCGCY	1 cut(s)	2530
BfrI	CTTAAG	1 cut(s)	1397
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	2273
Bme1390I	CCNGG	9 cut(s)	238, 1279, 1306, 1381, 1513, 2484, 2636, 3156, 3242
Bme18I	GGWCC	5 cut(s)	39, 47, 1274, 2616, 2951
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmgT120I	GGNCC	8 cut(s)	39, 47, 1235, 1236, 1274, 2110, 2616, 2951
BmiI	GGNNCC	8 cut(s)	1218, 1237, 1276, 1780, 2112, 2488, 2528, 2995
BmrFI	CCNGG	9 cut(s)	238, 1279, 1306, 1381, 1513, 2484, 2636, 3156, 3242
BmrI	ACTGGG	3 cut(s)	1222, 1719, 2188
BmsI	GCATC	6 cut(s)	712, 781, 1060, 1063, 2722, 2740
BmuI	ACTGGG	3 cut(s)	1222, 1719, 2188
BpiI	GAAGAC	3 cut(s)	1397, 2190, 2445
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpmI	CTGGAG	1 cut(s)	1998
Bpu10I	CCTNAGC	2 cut(s)	354, 2630
BpuEI	CTTGAG	5 cut(s)	92, 1689, 2081, 2218, 3158
BpuMI	CCSGG	3 cut(s)	238, 1306, 3242
BsaHI	GRCGYC	2 cut(s)	933, 2527
BsaJI	CCNNGG	9 cut(s)	269, 627, 766, 1239, 1277, 1379, 1380, 1512, 2947
BsaWI	WCCGGW	2 cut(s)	49, 1139
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 305, 822, 852, 2542, 2572
Bse118I	RCCGGY	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	796
Bse3DI	GCAATG	1 cut(s)	942
BseBI	CCWGG	6 cut(s)	1279, 1381, 1513, 2484, 2636, 3156
BseDI	CCNNGG	9 cut(s)	269, 627, 766, 1239, 1277, 1379, 1380, 1512, 2947
BseGI	GGATG	6 cut(s)	24, 532, 727, 1054, 2189, 2510
BseMI	GCAATG	1 cut(s)	942
BseMII	CTCAG	6 cut(s)	198, 226, 345, 1090, 1803, 2153
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	2 cut(s)	1194, 1239
BseYI	CCCAGC	1 cut(s)	2531
BsgI	GTGCAG	2 cut(s)	552, 2787
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	6 cut(s)	74, 274, 1237, 1656, 1689, 2111
BshNI	GGYRCC	2 cut(s)	1778, 2526
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	2416, 2659
BsiSI	CCGG	6 cut(s)	45, 50, 237, 1140, 1305, 3241
BslFI	GGGAC	1 cut(s)	605
BsmAI	GTCTC	5 cut(s)	54, 1261, 2383, 2750, 3092
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	6 cut(s)	74, 274, 1237, 1656, 1689, 2111
Bsp120I	GGGCCC	1 cut(s)	1235
Bsp1286I	GDGCHC	5 cut(s)	1194, 1239, 2234, 2416, 2659
Bsp1407I	TGTACA	2 cut(s)	697, 1149
BspACI	CCGC	6 cut(s)	7, 42, 148, 569, 2008, 3013
BspANI	GGCC	6 cut(s)	74, 274, 1237, 1656, 1689, 2111
BspCNI	CTCAG	6 cut(s)	197, 225, 346, 1089, 1804, 2154
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	8 cut(s)	1218, 1237, 1276, 1780, 2112, 2488, 2528, 2995
BspMAI	CTGCAG	2 cut(s)	922, 1951
BspPI	GGATC	8 cut(s)	1589, 2481, 2494, 2882, 2974, 2988, 3001, 3177
BspQI	GCTCTTC	1 cut(s)	1751
BspT107I	GGYRCC	2 cut(s)	1778, 2526
BspTI	CTTAAG	1 cut(s)	1397
BsrDI	GCAATG	1 cut(s)	942
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	2 cut(s)	697, 1149
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	9 cut(s)	269, 627, 766, 1239, 1277, 1379, 1380, 1512, 2947
BssNAI	GTATAC	2 cut(s)	1250, 1663
BssNI	GRCGYC	2 cut(s)	933, 2527
BssSI	CACGAG	1 cut(s)	2277
BssT1I	CCWWGG	4 cut(s)	627, 766, 1239, 2947
Bst1107I	GTATAC	2 cut(s)	1250, 1663
Bst2BI	CACGAG	1 cut(s)	2277
Bst2UI	CCWGG	6 cut(s)	1279, 1381, 1513, 2484, 2636, 3156
Bst4CI	ACNGT	6 cut(s)	704, 1414, 1490, 1636, 2130, 3225
Bst6I	CTCTTC	2 cut(s)	1751, 2206
BstACI	GRCGYC	2 cut(s)	933, 2527
BstAFI	CTTAAG	1 cut(s)	1397
BstAPI	GCANNNNNTGC	2 cut(s)	722, 2759
BstAUI	TGTACA	2 cut(s)	697, 1149
BstC8I	GCNNGC	3 cut(s)	72, 1022, 1419
BstDSI	CCRYGG	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	2633
BstF5I	GGATG	6 cut(s)	24, 532, 727, 1054, 2189, 2510
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	2530
BstHHI	GCGC	1 cut(s)	2529
BstMAI	GTCTC	5 cut(s)	54, 1261, 2383, 2750, 3092
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 147, 722, 762, 1060, 1934, 2108, 2759
BstNI	CCWGG	6 cut(s)	1279, 1381, 1513, 2484, 2636, 3156
BstNSI	RCATGY	3 cut(s)	965, 1256, 2946
BstSCI	CCNGG	9 cut(s)	236, 1277, 1304, 1379, 1511, 2482, 2634, 3154, 3240
BstSFI	CTRYAG	5 cut(s)	918, 1947, 2172, 2595, 2690
BstSLI	GKGCMC	2 cut(s)	1194, 1239
BstUI	CGCG	1 cut(s)	7
BstV2I	GAAGAC	3 cut(s)	1397, 2190, 2445
BstX2I	RGATCY	4 cut(s)	2273, 2486, 2993, 3169
BstXI	CCANNNNNNTGG	2 cut(s)	773, 1387
BstYI	RGATCY	4 cut(s)	2273, 2486, 2993, 3169
BstZ17I	GTATAC	2 cut(s)	1250, 1663
Bsu36I	CCTNAGG	1 cut(s)	796
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	6 cut(s)	74, 274, 1237, 1656, 1689, 2111
BtgI	CCRYGG	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	6 cut(s)	24, 532, 727, 1054, 2189, 2510
BtsI	GCAGTG	3 cut(s)	723, 927, 2411
Cac8I	GCNNGC	3 cut(s)	72, 1022, 1419
CaiI	CAGNNNCTG	2 cut(s)	2759, 2797
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	1 cut(s)	2529
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	8 cut(s)	39, 47, 1235, 1236, 1274, 2110, 2616, 2951
CpoI	CGGWCCG	1 cut(s)	47
Csp6I	GTAC	7 cut(s)	112, 665, 698, 926, 1114, 1150, 3000
CspI	CGGWCCG	1 cut(s)	47
CviQI	GTAC	7 cut(s)	112, 665, 698, 926, 1114, 1150, 3000
DinI	GGCGCC	1 cut(s)	2528
DraI	TTTAAA	3 cut(s)	87, 375, 2026
DriI	GACNNNNNGTC	1 cut(s)	45
EaeI	YGGCCR	2 cut(s)	1654, 1687
Eam1104I	CTCTTC	2 cut(s)	1751, 2206
Eam1105I	GACNNNNNGTC	1 cut(s)	45
EarI	CTCTTC	2 cut(s)	1751, 2206
EciI	GGCGGA	2 cut(s)	137, 558
Ecl136II	GAGCTC	1 cut(s)	2414
Eco130I	CCWWGG	4 cut(s)	627, 766, 1239, 2947
Eco24I	GRGCYC	3 cut(s)	1239, 2234, 2416
Eco47I	GGWCC	5 cut(s)	39, 47, 1274, 2616, 2951
Eco53kI	GAGCTC	1 cut(s)	2414
Eco57I	CTGAAG	4 cut(s)	465, 627, 2336, 3172
Eco81I	CCTNAGG	1 cut(s)	796
EcoICRI	GAGCTC	1 cut(s)	2414
EcoNI	CCTNNNNNAGG	1 cut(s)	2633
EcoO109I	RGGNCCY	1 cut(s)	1236
EcoRI	GAATTC	4 cut(s)	435, 490, 2360, 3040
EcoRII	CCWGG	6 cut(s)	1277, 1379, 1511, 2482, 2634, 3154
EcoT14I	CCWWGG	4 cut(s)	627, 766, 1239, 2947
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	3 cut(s)	1239, 2234, 2416
EgeI	GGCGCC	1 cut(s)	2528
EheI	GGCGCC	1 cut(s)	2528
ErhI	CCWWGG	4 cut(s)	627, 766, 1239, 2947
FalI	AAGNNNNNCTT	8 cut(s)	1521, 1553, 1548, 1580, 2450, 2482, 3073, 3105
FaqI	GGGAC	1 cut(s)	605
FbaI	TGATCA	2 cut(s)	2182, 2920
FblI	GTMKAC	5 cut(s)	1183, 1249, 1662, 3279, 3309
FokI	GGATG	6 cut(s)	31, 539, 734, 1041, 2176, 2497
FriOI	GRGCYC	3 cut(s)	1239, 2234, 2416
GlaI	GCGC	1 cut(s)	2528
GsaI	CCCAGC	1 cut(s)	2535
GsuI	CTGGAG	1 cut(s)	1998
HaeII	RGCGCY	1 cut(s)	2530
HaeIII	GGCC	6 cut(s)	74, 274, 1237, 1656, 1689, 2111
HapII	CCGG	6 cut(s)	45, 50, 237, 1140, 1305, 3241
HhaI	GCGC	1 cut(s)	2529
Hin1I	GRCGYC	2 cut(s)	933, 2527
Hin6I	GCGC	1 cut(s)	2527
HinP1I	GCGC	1 cut(s)	2527
HincII	GTYRAC	1 cut(s)	1984
HindII	GTYRAC	1 cut(s)	1984
HindIII	AAGCTT	1 cut(s)	1061
HpaII	CCGG	6 cut(s)	45, 50, 237, 1140, 1305, 3241
HphI	GGTGA	9 cut(s)	530, 800, 1121, 1154, 1172, 1337, 1501, 1559, 2574
Hpy99I	CGWCG	1 cut(s)	935
HpyCH4III	ACNGT	6 cut(s)	704, 1414, 1490, 1636, 2130, 3225
HpyCH4IV	ACGT	2 cut(s)	933, 2332
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 147, 722, 762, 1060, 1934, 2108, 2759
HpySE526I	ACGT	2 cut(s)	933, 2332
Hsp92I	GRCGYC	2 cut(s)	933, 2527
HspAI	GCGC	1 cut(s)	2527
KasI	GGCGCC	1 cut(s)	2526
Ksp22I	TGATCA	2 cut(s)	2182, 2920
LguI	GCTCTTC	1 cut(s)	1751
LmnI	GCTCC	7 cut(s)	95, 426, 1725, 1835, 2411, 2701, 2840
LweI	GCATC	6 cut(s)	712, 781, 1060, 1063, 2722, 2740
MaeII	ACGT	2 cut(s)	933, 2332
MfeI	CAATTG	5 cut(s)	1310, 2146, 2742, 2807, 2924
MflI	RGATCY	4 cut(s)	2273, 2486, 2993, 3169
MhlI	GDGCHC	5 cut(s)	1194, 1239, 2234, 2416, 2659
MlsI	TGGCCA	2 cut(s)	1656, 1689
MluNI	TGGCCA	2 cut(s)	1656, 1689
Mly113I	GGCGCC	1 cut(s)	2527
MlyI	GAGTC	5 cut(s)	173, 428, 1216, 2385, 2951
MmeI	TCCRAC	3 cut(s)	844, 2585, 2818
Mox20I	TGGCCA	2 cut(s)	1656, 1689
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	2 cut(s)	2465, 2497
MscI	TGGCCA	2 cut(s)	1656, 1689
MseI	TTAA	9 cut(s)	86, 207, 374, 383, 1398, 1799, 2025, 2418, 2436
MslI	CAYNNNNRTG	3 cut(s)	783, 1122, 1197
Msp20I	TGGCCA	2 cut(s)	1656, 1689
MspA1I	CMGCKG	2 cut(s)	1289, 2725
MspCI	CTTAAG	1 cut(s)	1397
MspI	CCGG	6 cut(s)	45, 50, 237, 1140, 1305, 3241
MspR9I	CCNGG	9 cut(s)	238, 1279, 1306, 1381, 1513, 2484, 2636, 3156, 3242
MunI	CAATTG	5 cut(s)	1310, 2146, 2742, 2807, 2924
MvaI	CCWGG	6 cut(s)	1279, 1381, 1513, 2484, 2636, 3156
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	8 cut(s)	80, 147, 722, 762, 1060, 1934, 2108, 2759
NarI	GGCGCC	1 cut(s)	2527
NciI	CCSGG	3 cut(s)	238, 1306, 3242
NlaIV	GGNNCC	8 cut(s)	1218, 1237, 1276, 1780, 2112, 2488, 2528, 2995
NmuCI	GTSAC	7 cut(s)	1208, 1547, 2091, 2141, 2237, 2793, 3023
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	3 cut(s)	965, 1256, 2946
PagI	TCATGA	1 cut(s)	778
PasI	CCCWGGG	1 cut(s)	1380
PciI	ACATGT	1 cut(s)	1252
PciSI	GCTCTTC	1 cut(s)	1751
PcsI	WCGNNNNNNNCGW	1 cut(s)	3190
PdmI	GAANNNNTTC	2 cut(s)	2465, 2497
PfeI	GAWTC	8 cut(s)	647, 890, 914, 1010, 1391, 2267, 2309, 3086
PflMI	CCANNNNNTGG	1 cut(s)	2447
PfoI	TCCNGGA	1 cut(s)	2482
PleI	GAGTC	5 cut(s)	172, 427, 1215, 2384, 2951
PluTI	GGCGCC	1 cut(s)	2530
PpsI	GAGTC	5 cut(s)	172, 427, 1215, 2384, 2951
PscI	ACATGT	1 cut(s)	1252
PshBI	ATTAAT	1 cut(s)	383
PsiI	TTATAA	2 cut(s)	309, 2049
Psp124BI	GAGCTC	1 cut(s)	2416
Psp6I	CCWGG	6 cut(s)	1277, 1379, 1511, 2482, 2634, 3154
PspFI	CCCAGC	1 cut(s)	2531
PspGI	CCWGG	6 cut(s)	1277, 1379, 1511, 2482, 2634, 3154
PspN4I	GGNNCC	8 cut(s)	1218, 1237, 1276, 1780, 2112, 2488, 2528, 2995
PspOMI	GGGCCC	1 cut(s)	1235
PspPI	GGNCC	8 cut(s)	39, 47, 1235, 1236, 1274, 2110, 2616, 2951
PsrI	GAACNNNNNNTAC	2 cut(s)	3001, 3033
PstI	CTGCAG	2 cut(s)	922, 1951
PstNI	CAGNNNCTG	2 cut(s)	2759, 2797
PsuI	RGATCY	4 cut(s)	2273, 2486, 2993, 3169
PvuII	CAGCTG	2 cut(s)	1289, 2725
RsaI	GTAC	7 cut(s)	113, 666, 699, 927, 1115, 1151, 3001
RsaNI	GTAC	7 cut(s)	112, 665, 698, 926, 1114, 1150, 3000
RseI	CAYNNNNRTG	3 cut(s)	783, 1122, 1197
Rsr2I	CGGWCCG	1 cut(s)	47
RsrII	CGGWCCG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	2416
SapI	GCTCTTC	1 cut(s)	1751
SaqAI	TTAA	9 cut(s)	86, 207, 374, 383, 1398, 1799, 2025, 2418, 2436
Sau96I	GGNCC	8 cut(s)	39, 47, 1235, 1236, 1274, 2110, 2616, 2951
SchI	GAGTC	5 cut(s)	173, 428, 1216, 2385, 2951
ScrFI	CCNGG	9 cut(s)	238, 1279, 1306, 1381, 1513, 2484, 2636, 3156, 3242
SduI	GDGCHC	5 cut(s)	1194, 1239, 2234, 2416, 2659
SfaNI	GCATC	6 cut(s)	712, 781, 1060, 1063, 2722, 2740
SfcI	CTRYAG	5 cut(s)	918, 1947, 2172, 2595, 2690
SfoI	GGCGCC	1 cut(s)	2528
SinI	GGWCC	5 cut(s)	39, 47, 1274, 2616, 2951
SmiMI	CAYNNNNRTG	3 cut(s)	783, 1122, 1197
SmlI	CTYRAG	6 cut(s)	107, 1397, 1704, 2096, 2233, 3173
SmoI	CTYRAG	6 cut(s)	107, 1397, 1704, 2096, 2233, 3173
SsiI	CCGC	6 cut(s)	7, 42, 148, 569, 2008, 3013
SspDI	GGCGCC	1 cut(s)	2526
SspI	AATATT	1 cut(s)	2422
SstI	GAGCTC	1 cut(s)	2416
StyD4I	CCNGG	9 cut(s)	236, 1277, 1304, 1379, 1511, 2482, 2634, 3154, 3240
StyI	CCWWGG	4 cut(s)	627, 766, 1239, 2947
TaaI	ACNGT	6 cut(s)	704, 1414, 1490, 1636, 2130, 3225
TaiI	ACGT	2 cut(s)	936, 2335
TaqI	TCGA	8 cut(s)	54, 66, 403, 930, 1481, 1593, 2374, 2677
TatI	WGTACW	3 cut(s)	664, 697, 1149
TauI	GCSGC	1 cut(s)	2010
TfiI	GAWTC	8 cut(s)	647, 890, 914, 1010, 1391, 2267, 2309, 3086
Tru1I	TTAA	9 cut(s)	86, 207, 374, 383, 1398, 1799, 2025, 2418, 2436
Tru9I	TTAA	9 cut(s)	86, 207, 374, 383, 1398, 1799, 2025, 2418, 2436
TseFI	GTSAC	7 cut(s)	1208, 1547, 2091, 2141, 2237, 2793, 3023
Tsp45I	GTSAC	7 cut(s)	1208, 1547, 2091, 2141, 2237, 2793, 3023
TspGWI	ACGGA	6 cut(s)	26, 129, 157, 487, 1209, 2863
Van91I	CCANNNNNTGG	1 cut(s)	2447
Vha464I	CTTAAG	1 cut(s)	1397
VpaK11BI	GGWCC	5 cut(s)	39, 47, 1274, 2616, 2951
VspI	ATTAAT	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	2633
XapI	RAATTY	5 cut(s)	435, 490, 1767, 2360, 3040
XbaI	TCTAGA	2 cut(s)	224, 2501
XceI	RCATGY	3 cut(s)	965, 1256, 2946
XmiI	GTMKAC	5 cut(s)	1183, 1249, 1662, 3279, 3309
XmnI	GAANNNNTTC	2 cut(s)	2465, 2497
ZraI	GACGTC	1 cut(s)	934
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.