Rmu_sc0002260.1_g000045

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002260.1
OG0009360
Physical Location & Seq
Reverse (-)
198205 .. 201004
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1236 bp
atgtctggtcacggcggagtttcgatcggtcgggctcggggcgagaaccggttctacaacccgcccccgattcgagagcgacaacaccagcaactgcttcagcagcagcagcagcagcagcagaagctcgaacaggagaagcagcagcatcagaggcggccggtgtcggtgtcggtggtggagtccgacgactgtgctacgtcgcatagttccgggtcgggtcgggaagcgctcagcgaggccgcgaatttagatcggttccttgagttcacaacgcccctggctcgagctcattttttgcccaagacgagtagcaggggatggaggactcatgcgccggagttacatccctactttgtgcttggagatttgtgggaatctttcaaggagtggagtgcgtacggcgcgggtgtccctcttttgttaaatgggagtgactctgtcatacagtactatgtaccttacttgtctgccattcagctctatgtagacccatcaaagcctcccacaaggataaggaagcctggtgatgacagtgatgcagagtcatcaagggagacaagtagtgatggcagcagtgattatggagcagaaagaggaatgaatggtgttgttgatgatgcttggagtcggcagaatattgctgatgtaaatggccatggttggaatagagtcttaccaagagataaacccttaactggttcctcaagtgatgaaagtgagatttgcaatcctccaggtcagcttgtatttcaatatttggagcacgatcaaccgtttggccgtgaacctttggctgataagattcaagttcttgcatcccaatttccagagctgaggacttacaggagctcggacttatcaccttctagttggatctctgtagcatggtatcctatatatcggatacctacaggtccaacattacagagtctggatgcttgcttcttgacctttcattccctttcgactcccttaaagggtacaagcactgataggcttcgtcccagcggtgcacgacctagagaggttcaaaatgccgacttcaaactctcgttgccaacttttggattggcttcctacaagttcaagggttccttttggaaccctaatggagtttacgaatctcaaaaggctaattctctattgcgagcagctgaaaactggctcaggctattgcaagttcatcatcctgatttcaacttctttgtgtcacacaatacaccaaggaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

411

Amino Acids

46.27

Weight (kDa)

6.9

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 82 - 403 1.3e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccI GTMKAC 1 cut(s) 489
AccII CGCG 2 cut(s) 245, 407
AciI CCGC 6 cut(s) 15, 62, 157, 243, 407, 1011
AclWI GGATC 1 cut(s) 884
AcoI YGGCCR 3 cut(s) 158, 655, 781
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 4 cut(s) 401, 452, 459, 985
AfeI AGCGCT 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 698, 980, 1067
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 7 cut(s) 385, 755, 809, 1034, 1048, 1090, 1201
AjnI CCWGG 3 cut(s) 279, 523, 736
AluBI AGCT 7 cut(s) 127, 290, 481, 745, 835, 852, 1157
AluI AGCT 7 cut(s) 127, 290, 481, 745, 835, 852, 1157
Alw21I GWGCWC 4 cut(s) 292, 768, 854, 1018
Alw26I GTCTC 1 cut(s) 551
Alw44I GTGCAC 1 cut(s) 1014
AlwI GGATC 1 cut(s) 884
AlwNI CAGNNNCTG 2 cut(s) 94, 934
Ama87I CYCGRG 2 cut(s) 36, 285
Aor51HI AGCGCT 1 cut(s) 231
AoxI GGCC 4 cut(s) 158, 240, 655, 781
ApaLI GTGCAC 1 cut(s) 1014
ApoI RAATTY 1 cut(s) 247
AsiGI ACCGGT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 3 cut(s) 232, 337, 407
AspS9I GGNCC 1 cut(s) 917
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 539, 855
AvaI CYCGRG 2 cut(s) 36, 285
AvaII GGWCC 1 cut(s) 917
BaeGI GKGCMC 1 cut(s) 1018
BalI TGGCCA 1 cut(s) 657
BanII GRGCYC 3 cut(s) 37, 292, 854
Bbv12I GWGCWC 4 cut(s) 292, 768, 854, 1018
BbvCI CCTCAGC 1 cut(s) 836
BccI CCATC 3 cut(s) 315, 502, 563
BceAI ACGGC 3 cut(s) 28, 418, 768
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 3 cut(s) 281, 525, 738
BciVI GTATCC 2 cut(s) 900, 903
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 2 cut(s) 870, 1023
BfmI CTRYAG 2 cut(s) 882, 912
BfoI RGCGCY 1 cut(s) 233
BfuI GTATCC 2 cut(s) 900, 903
BlpI GCTNAGC 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 4 cut(s) 214, 281, 525, 738
Bme18I GGWCC 1 cut(s) 917
BmeT110I CYCGRG 2 cut(s) 36, 285
BmgT120I GGNCC 1 cut(s) 917
BmiI GGNNCC 4 cut(s) 260, 703, 1096, 1106
BmrFI CCNGG 4 cut(s) 214, 281, 525, 738
BmsI GCATC 5 cut(s) 157, 529, 610, 827, 928
BpmI CTGGAG 1 cut(s) 720
Bpu10I CCTNAGC 2 cut(s) 836, 1169
Bpu1102I GCTNAGC 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 284, 691
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 3 cut(s) 279, 658, 1226
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 3 cut(s) 698, 980, 1067
Bse118I RCCGGY 2 cut(s) 48, 160
Bse1I ACTGG 2 cut(s) 703, 1169
BseBI CCWGG 3 cut(s) 281, 525, 738
BseDI CCNNGG 3 cut(s) 279, 658, 1226
BseGI GGATG 5 cut(s) 326, 346, 818, 943, 1189
BseLI CCNNNNNNNGG 3 cut(s) 698, 980, 1067
BseMII CTCAG 3 cut(s) 247, 827, 1183
BseNI ACTGG 2 cut(s) 703, 1169
BseSI GKGCMC 1 cut(s) 1018
BseX3I CGGCCG 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 1007
Bsh1236I CGCG 2 cut(s) 245, 407
Bsh1285I CGRYCG 3 cut(s) 27, 31, 161
BshFI GGCC 4 cut(s) 160, 242, 657, 783
BshTI ACCGGT 1 cut(s) 48
BsiEI CGRYCG 3 cut(s) 27, 31, 161
BsiHKAI GWGCWC 4 cut(s) 292, 768, 854, 1018
BsiHKCI CYCGRG 2 cut(s) 36, 285
BsiSI CCGG 4 cut(s) 49, 161, 213, 338
BsiWI CGTACG 1 cut(s) 399
BslFI GGGAC 2 cut(s) 398, 990
BslI CCNNNNNNNGG 3 cut(s) 698, 980, 1067
BsmAI GTCTC 1 cut(s) 551
BsmFI GGGAC 2 cut(s) 398, 990
BsnI GGCC 4 cut(s) 160, 242, 657, 783
BsoBI CYCGRG 2 cut(s) 36, 285
Bsp1286I GDGCHC 5 cut(s) 37, 292, 768, 854, 1018
Bsp143I GATC 4 cut(s) 24, 253, 769, 876
Bsp1720I GCTNAGC 1 cut(s) 233
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 6 cut(s) 15, 62, 157, 243, 407, 1011
BspANI GGCC 4 cut(s) 160, 242, 657, 783
BspCNI CTCAG 3 cut(s) 246, 828, 1182
BspFNI CGCG 2 cut(s) 245, 407
BspLI GGNNCC 4 cut(s) 260, 703, 1096, 1106
BspPI GGATC 1 cut(s) 884
BsrFI RCCGGY 2 cut(s) 48, 160
BsrI ACTGG 2 cut(s) 703, 1169
BssAI RCCGGY 2 cut(s) 48, 160
BssECI CCNNGG 3 cut(s) 279, 658, 1226
BssMI GATC 4 cut(s) 24, 253, 769, 876
BssT1I CCWWGG 2 cut(s) 658, 1226
Bst2UI CCWGG 3 cut(s) 281, 525, 738
Bst4CI ACNGT 4 cut(s) 194, 450, 536, 777
BstC8I GCNNGC 2 cut(s) 943, 1152
BstDEI CTNAG 3 cut(s) 233, 836, 1169
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 5 cut(s) 326, 346, 818, 943, 1189
BstFNI CGCG 2 cut(s) 245, 407
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 3 cut(s) 232, 337, 407
BstKTI GATC 4 cut(s) 27, 256, 772, 879
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 4 cut(s) 24, 253, 769, 876
BstMCI CGRYCG 3 cut(s) 27, 31, 161
BstMWI GCNNNNNNNGC 8 cut(s) 103, 109, 112, 115, 118, 124, 154, 404
BstNI CCWGG 3 cut(s) 281, 525, 738
BstSCI CCNGG 4 cut(s) 212, 279, 523, 736
BstSFI CTRYAG 2 cut(s) 882, 912
BstSLI GKGCMC 1 cut(s) 1018
BstUI CGCG 2 cut(s) 245, 407
BstX2I RGATCY 1 cut(s) 876
BstYI RGATCY 1 cut(s) 876
BstZI CGGCCG 1 cut(s) 158
BsuI GTATCC 2 cut(s) 900, 903
BsuRI GGCC 4 cut(s) 160, 242, 657, 783
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 5 cut(s) 326, 346, 818, 943, 1189
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 3 cut(s) 541, 583, 990
Cac8I GCNNGC 2 cut(s) 943, 1152
CaiI CAGNNNCTG 2 cut(s) 94, 934
CfoI GCGC 3 cut(s) 232, 337, 407
Cfr10I RCCGGY 2 cut(s) 48, 160
Cfr13I GGNCC 1 cut(s) 917
Csp6I GTAC 4 cut(s) 400, 451, 458, 984
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 3 cut(s) 332, 659, 888
CviQI GTAC 4 cut(s) 400, 451, 458, 984
DdeI CTNAG 3 cut(s) 233, 836, 1169
DpnI GATC 4 cut(s) 26, 255, 771, 878
DpnII GATC 4 cut(s) 24, 253, 769, 876
EaeI YGGCCR 3 cut(s) 158, 655, 781
EagI CGGCCG 1 cut(s) 158
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 2 cut(s) 290, 852
EclXI CGGCCG 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 658, 1226
Eco24I GRGCYC 3 cut(s) 37, 292, 854
Eco47I GGWCC 1 cut(s) 917
Eco47III AGCGCT 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 158
Eco53kI GAGCTC 2 cut(s) 290, 852
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 36, 285
EcoICRI GAGCTC 2 cut(s) 290, 852
EcoRII CCWGG 3 cut(s) 279, 523, 736
EcoT14I CCWWGG 2 cut(s) 658, 1226
EcoT38I GRGCYC 3 cut(s) 37, 292, 854
ErhI CCWWGG 2 cut(s) 658, 1226
FaeI CATG 3 cut(s) 335, 662, 891
FalI AAGNNNNNCTT 2 cut(s) 1082, 1114
FaqI GGGAC 2 cut(s) 398, 990
FatI CATG 3 cut(s) 331, 658, 887
FauI CCCGC 2 cut(s) 69, 400
FblI GTMKAC 1 cut(s) 489
FokI GGATG 5 cut(s) 333, 333, 805, 950, 1176
FriOI GRGCYC 3 cut(s) 37, 292, 854
FspBI CTAG 2 cut(s) 870, 1023
GlaI GCGC 3 cut(s) 231, 336, 406
GsaI CCCAGC 1 cut(s) 1011
GsuI CTGGAG 1 cut(s) 720
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 4 cut(s) 160, 242, 657, 783
HapII CCGG 4 cut(s) 49, 161, 213, 338
HhaI GCGC 3 cut(s) 232, 337, 407
Hin1II CATG 3 cut(s) 335, 662, 891
Hin6I GCGC 3 cut(s) 230, 335, 405
HinP1I GCGC 3 cut(s) 230, 335, 405
HpaII CCGG 4 cut(s) 49, 161, 213, 338
HphI GGTGA 2 cut(s) 539, 855
Hpy166II GTNNAC 5 cut(s) 270, 490, 788, 1016, 1120
Hpy188I TCNGA 4 cut(s) 153, 187, 856, 906
Hpy188III TCNNGA 6 cut(s) 74, 224, 830, 935, 949, 1193
Hpy8I GTNNAC 5 cut(s) 270, 490, 788, 1016, 1120
Hpy99I CGWCG 2 cut(s) 191, 205
HpyAV CCTTC 1 cut(s) 876
HpyCH4III ACNGT 4 cut(s) 194, 450, 536, 777
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 542, 729, 818, 1016, 1180
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 109, 112, 115, 118, 124, 154, 404
HpyF3I CTNAG 3 cut(s) 233, 836, 1169
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 3 cut(s) 335, 662, 891
HspAI GCGC 3 cut(s) 230, 335, 405
Kzo9I GATC 4 cut(s) 24, 253, 769, 876
LmnI GCTCC 3 cut(s) 587, 763, 849
LweI GCATC 5 cut(s) 157, 529, 610, 827, 928
MaeI CTAG 2 cut(s) 870, 1023
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 4 cut(s) 8, 342, 434, 1212
MalI GATC 4 cut(s) 26, 255, 771, 878
MboI GATC 4 cut(s) 24, 253, 769, 876
MflI RGATCY 1 cut(s) 876
MhlI GDGCHC 5 cut(s) 37, 292, 768, 854, 1018
MlsI TGGCCA 1 cut(s) 657
MluCI AATT 3 cut(s) 247, 824, 1138
MluNI TGGCCA 1 cut(s) 657
MlyI GAGTC 8 cut(s) 191, 322, 431, 554, 637, 681, 940, 964
MmeI TCCRAC 4 cut(s) 210, 644, 854, 944
Mox20I TGGCCA 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 50
MscI TGGCCA 1 cut(s) 657
MseI TTAA 3 cut(s) 425, 695, 977
Msp20I TGGCCA 1 cut(s) 657
MspA1I CMGCKG 2 cut(s) 1011, 1157
MspI CCGG 4 cut(s) 49, 161, 213, 338
MspR9I CCNGG 4 cut(s) 214, 281, 525, 738
MvaI CCWGG 3 cut(s) 281, 525, 738
MvnI CGCG 2 cut(s) 245, 407
MwoI GCNNNNNNNGC 8 cut(s) 103, 109, 112, 115, 118, 124, 154, 404
NciI CCSGG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 658
NdeII GATC 4 cut(s) 24, 253, 769, 876
NlaIII CATG 3 cut(s) 335, 662, 891
NlaIV GGNNCC 4 cut(s) 260, 703, 1096, 1106
NmuCI GTSAC 3 cut(s) 8, 434, 1212
PaeR7I CTCGAG 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 70, 377, 805, 1124
Pfl23II CGTACG 1 cut(s) 399
PflFI GACNNNGTC 1 cut(s) 440
PflMI CCANNNNNTGG 1 cut(s) 1067
PinAI ACCGGT 1 cut(s) 48
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 8 cut(s) 190, 322, 431, 553, 636, 680, 939, 964
PpsI GAGTC 8 cut(s) 190, 322, 431, 553, 636, 680, 939, 964
Psp124BI GAGCTC 2 cut(s) 292, 854
Psp6I CCWGG 3 cut(s) 279, 523, 736
PspFI CCCAGC 1 cut(s) 1007
PspGI CCWGG 3 cut(s) 279, 523, 736
PspLI CGTACG 1 cut(s) 399
PspN4I GGNNCC 4 cut(s) 260, 703, 1096, 1106
PspPI GGNCC 1 cut(s) 917
PspXI VCTCGAGB 1 cut(s) 285
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PstNI CAGNNNCTG 2 cut(s) 94, 934
PsuI RGATCY 1 cut(s) 876
PsyI GACNNNGTC 1 cut(s) 440
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 4 cut(s) 401, 452, 459, 985
RsaNI GTAC 4 cut(s) 400, 451, 458, 984
SacI GAGCTC 2 cut(s) 292, 854
SaqAI TTAA 3 cut(s) 425, 695, 977
Sau3AI GATC 4 cut(s) 24, 253, 769, 876
Sau96I GGNCC 1 cut(s) 917
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 8 cut(s) 191, 322, 431, 554, 637, 681, 940, 964
ScrFI CCNGG 4 cut(s) 214, 281, 525, 738
SduI GDGCHC 5 cut(s) 37, 292, 768, 854, 1018
SfaNI GCATC 5 cut(s) 157, 529, 610, 827, 928
SfcI CTRYAG 2 cut(s) 882, 912
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 917
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 263, 285, 706
SmoI CTYRAG 3 cut(s) 263, 285, 706
Sse9I AATT 3 cut(s) 247, 824, 1138
SsiI CCGC 6 cut(s) 15, 62, 157, 243, 407, 1011
SspI AATATT 2 cut(s) 640, 758
SspMI CTAG 2 cut(s) 870, 1023
SstI GAGCTC 2 cut(s) 292, 854
StyD4I CCNGG 4 cut(s) 212, 279, 523, 736
StyI CCWWGG 2 cut(s) 658, 1226
TaaI ACNGT 4 cut(s) 194, 450, 536, 777
TaiI ACGT 1 cut(s) 203
TaqI TCGA 5 cut(s) 23, 73, 129, 286, 968
TaqII GACCGA 1 cut(s) 17
TasI AATT 3 cut(s) 247, 824, 1138
TatI WGTACW 1 cut(s) 450
TauI GCSGC 2 cut(s) 160, 245
TfiI GAWTC 4 cut(s) 70, 377, 805, 1124
Tru1I TTAA 3 cut(s) 425, 695, 977
Tru9I TTAA 3 cut(s) 425, 695, 977
TscAI CASTG 3 cut(s) 541, 583, 997
TseFI GTSAC 3 cut(s) 8, 434, 1212
Tsp45I GTSAC 3 cut(s) 8, 434, 1212
TspDTI ATGAA 4 cut(s) 617, 729, 947, 1175
TspRI CASTG 3 cut(s) 541, 583, 997
Tth111I GACNNNGTC 1 cut(s) 440
Van91I CCANNNNNTGG 1 cut(s) 1067
VneI GTGCAC 1 cut(s) 1014
VpaK11BI GGWCC 1 cut(s) 917
XapI RAATTY 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 870, 1023
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.