Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002404.1

Orthogroup ID

OG0004194

Physical Location & Seq

Genomic Coordinates Forward (+)

107868 .. 110860

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgtcaaaggagaatgggttggtggtttcaaagaattgtgatgttactgatggaaatggctgtagtgaatttcccagtaacatggatgataaagtggagttgactgctgaaataaaagaagagggacgggttgatgaaacgtttccatctgatgaaatggagttgtctgctgaagtaaaagaagagggagctgctaatgaaacatttccatctgacgattctaggccttcaaagaagtcaagatctgtaattgaagagaagtttggttctggtgaagcagattatggaggcgtgagtgctgcaggaaaagttgtggggcaaacctgcatggaacctgaaccagaagctgcagctaacattgaattctcagagaatgatagaagtttaaagacacacccacgtgaaaagaagcttattgacttcagagaaaagttgtaccttgcacctttgaccgcagtcggaaatcttccatttcgaaggggtcaagcttcggaatgggccctgctgaggagacattcatctgaggatttgtttggcgttcagttatgtggggcatatccagacaccgtagcacgcactgttgaacttatagaacaggaatgtaccgtagacttcattgatataaatatggggtgcccaatagatattgttgtgaacaagggtgctggctcatctcttctaacaaaaccaatgcgaatgaaaggcattgtgcaagcagcttctggtacagttgacattcctataactatcaaggtccgcacagcctattttgaggggaaaaatcgcattgactcacttattgctgacatgggtaactggggagccagtgcagtaacaatacacggtcgatcacgacagcaacgctacggcaagcttgcagattgggaatatgtgtaccagtgtgctaaaaaagcccctgattctttgcaagttcttggaaatggagatgtattttcatgtcatcccacaacgactgagctggcgcccaccatcttatttcaatattttgtacgtgatgaccttgagacactaatggcttctgattctgccgctgactgggttaggctctctgagatgttgcttgggaaggttccagatggtttcacatttgcaccaaatcataaatccaatgcttacgaccgagcagaaaacggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

385

Amino Acids

42.25

Weight (kDa)

4.82

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	173 - 321	4.2e-34	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38890
fragaria_vesca	FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690 FvH4_2g10690
malus_domestica	MD05G1054400.v1.1 MD10G1062000.v1.1
prunus_persica	Prupe.8G082800_v2.0.a1
pyrus_communis	pycom10g04770
rosa_chinensis	RchiOBHm_Chr6g0268371 RchiOBHm_Chr6g0268451 RchiOBHm_Chr6g0268461 RchiOBHm_Chr6g0271651 RchiOBHm_Chr6g0271661
rosa_laevigata	RLG00000013910
rosa_multiflora	Rmu_sc0002404.1_g000009 Rmu_sc0002404.1_g000017 Rmu_sc0007949.1_g000004 Rmu_sc0008184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00199830
rosa_rugosa	Rorug06G0041000 Rorug06G0042100
rosa_samantha	Rh6AG161000 Rh6BG165400 Rh6CG152700 Rh6CG159400 Rh6DG151200
rosa_wichuraiana	Rw6G013920 Rw6G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	633, 982
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	3 cut(s)	453, 757, 1050
AclI	AACGTT	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	68, 362
AcuI	CTGAAG	2 cut(s)	192, 406
AcvI	CACGTG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	983
AfaI	GTAC	5 cut(s)	437, 604, 727, 896, 1011
AfiI	CCNNNNNNNGG	2 cut(s)	507, 1056
AgsI	TTSAA	6 cut(s)	30, 231, 254, 362, 584, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	8 cut(s)	191, 347, 353, 412, 488, 719, 874, 979
AluI	AGCT	8 cut(s)	191, 347, 353, 412, 488, 719, 874, 979
Alw26I	GTCTC	2 cut(s)	505, 1019
AlwNI	CAGNNNCTG	2 cut(s)	347, 722
AoxI	GGCC	2 cut(s)	224, 498
ApaI	GGGCCC	1 cut(s)	502
ApeKI	GCWGC	5 cut(s)	191, 299, 347, 350, 716
ApoI	RAATTY	2 cut(s)	68, 362
Asp700I	GAANNNNTTC	2 cut(s)	141, 204
AspLEI	GCGC	1 cut(s)	985
AspS9I	GGNCC	3 cut(s)	498, 499, 754
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	754
BaeGI	GKGCMC	2 cut(s)	502, 638
BanI	GGYRCC	2 cut(s)	633, 982
BanII	GRGCYC	1 cut(s)	502
BbrPI	CACGTG	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	506
BbvI	GCAGC	5 cut(s)	178, 286, 334, 362, 728
BccI	CCATC	5 cut(s)	44, 154, 217, 998, 1091
BceAI	ACGGC	1 cut(s)	883
BcoDI	GTCTC	2 cut(s)	505, 1019
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	3 cut(s)	61, 300, 348
BfoI	RGCGCY	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
BlsI	GCNGC	6 cut(s)	193, 301, 349, 352, 718, 1051
Bme18I	GGWCC	1 cut(s)	754
BmgT120I	GGNCC	3 cut(s)	498, 499, 754
BmiI	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
BmrI	ACTGGG	3 cut(s)	69, 826, 1066
BmuI	ACTGGG	3 cut(s)	69, 826, 1066
BoxI	GACNNNNGTC	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	506
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	1043
BsaAI	YACGTR	2 cut(s)	401, 1013
BsaHI	GRCGYC	1 cut(s)	983
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 1056
Bse1I	ACTGG	5 cut(s)	75, 821, 825, 898, 1061
BseGI	GGATG	2 cut(s)	91, 961
BseLI	CCNNNNNNNGG	2 cut(s)	507, 1056
BseMII	CTCAG	5 cut(s)	381, 497, 513, 966, 1062
BseNI	ACTGG	5 cut(s)	75, 821, 825, 898, 1061
BseRI	GAGGAG	1 cut(s)	523
BseSI	GKGCMC	2 cut(s)	502, 638
BseXI	GCAGC	5 cut(s)	178, 286, 334, 362, 728
BsgI	GTGCAG	1 cut(s)	849
Bsh1285I	CGRYCG	2 cut(s)	847, 1141
BshFI	GGCC	2 cut(s)	226, 500
BshNI	GGYRCC	2 cut(s)	633, 982
BsiEI	CGRYCG	2 cut(s)	847, 1141
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	507, 1056
BsmAI	GTCTC	2 cut(s)	505, 1019
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	226, 500
Bsp119I	TTCGAA	1 cut(s)	475
Bsp120I	GGGCCC	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	502, 638
Bsp143I	GATC	2 cut(s)	242, 848
BspACI	CCGC	3 cut(s)	453, 757, 1050
BspANI	GGCC	2 cut(s)	226, 500
BspCNI	CTCAG	5 cut(s)	380, 498, 514, 967, 1063
BspLI	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
BspMAI	CTGCAG	2 cut(s)	304, 352
BspMI	ACCTGC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	475
BspT107I	GGYRCC	2 cut(s)	633, 982
BsrI	ACTGG	5 cut(s)	75, 821, 825, 898, 1061
BssMI	GATC	2 cut(s)	242, 848
BssNI	GRCGYC	1 cut(s)	983
Bst4CI	ACNGT	5 cut(s)	568, 580, 607, 730, 845
Bst6I	CTCTTC	4 cut(s)	114, 177, 249, 681
BstACI	GRCGYC	1 cut(s)	983
BstBAI	YACGTR	2 cut(s)	401, 1013
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	6 cut(s)	574, 667, 714, 872, 876, 981
BstDEI	CTNAG	5 cut(s)	367, 506, 522, 975, 1071
BstF5I	GGATG	2 cut(s)	91, 961
BstH2I	RGCGCY	1 cut(s)	986
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	2 cut(s)	245, 851
BstMAI	GTCTC	2 cut(s)	505, 1019
BstMBI	GATC	2 cut(s)	242, 848
BstMCI	CGRYCG	2 cut(s)	847, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	911
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSFI	CTRYAG	3 cut(s)	61, 300, 348
BstSLI	GKGCMC	2 cut(s)	502, 638
BstV1I	GCAGC	5 cut(s)	178, 286, 334, 362, 728
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	226, 500
BtsCI	GGATG	2 cut(s)	91, 961
BtsIMutI	CAGTG	3 cut(s)	576, 832, 905
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	6 cut(s)	574, 667, 714, 872, 876, 981
CaiI	CAGNNNCTG	2 cut(s)	347, 722
CfoI	GCGC	1 cut(s)	985
Cfr13I	GGNCC	3 cut(s)	498, 499, 754
Csp6I	GTAC	5 cut(s)	436, 603, 726, 895, 1010
CviAII	CATG	4 cut(s)	82, 328, 808, 957
CviQI	GTAC	5 cut(s)	436, 603, 726, 895, 1010
DdeI	CTNAG	5 cut(s)	367, 506, 522, 975, 1071
DinI	GGCGCC	1 cut(s)	984
DpnI	GATC	2 cut(s)	244, 850
DpnII	GATC	2 cut(s)	242, 848
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	4 cut(s)	114, 177, 249, 681
EarI	CTCTTC	4 cut(s)	114, 177, 249, 681
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	2 cut(s)	192, 406
Eco72I	CACGTG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	502
EgeI	GGCGCC	1 cut(s)	984
EheI	GGCGCC	1 cut(s)	984
FaeI	CATG	4 cut(s)	85, 331, 811, 960
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	4 cut(s)	81, 327, 807, 956
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
FokI	GGATG	2 cut(s)	98, 948
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	984
GluI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
HaeII	RGCGCY	1 cut(s)	986
HaeIII	GGCC	2 cut(s)	226, 500
HhaI	GCGC	1 cut(s)	985
Hin1I	GRCGYC	1 cut(s)	983
Hin1II	CATG	4 cut(s)	85, 331, 811, 960
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HincII	GTYRAC	2 cut(s)	102, 733
HindII	GTYRAC	2 cut(s)	102, 733
HindIII	AAGCTT	3 cut(s)	410, 486, 872
HinfI	GANTC	4 cut(s)	218, 791, 920, 1043
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	5 cut(s)	102, 610, 655, 733, 895
Hpy188I	TCNGA	9 cut(s)	151, 214, 370, 425, 461, 493, 523, 1042, 1072
Hpy188III	TCNNGA	4 cut(s)	240, 560, 852, 1094
Hpy8I	GTNNAC	5 cut(s)	102, 610, 655, 733, 895
HpyAV	CCTTC	3 cut(s)	237, 471, 1081
HpyCH4III	ACNGT	5 cut(s)	568, 580, 607, 730, 845
HpyCH4IV	ACGT	3 cut(s)	140, 400, 1012
HpyCH4V	TGCA	9 cut(s)	302, 327, 350, 443, 712, 830, 878, 928, 1112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	911
HpyF3I	CTNAG	5 cut(s)	367, 506, 522, 975, 1071
HpySE526I	ACGT	3 cut(s)	140, 400, 1012
Hsp92I	GRCGYC	1 cut(s)	983
Hsp92II	CATG	4 cut(s)	85, 331, 811, 960
HspAI	GCGC	1 cut(s)	983
KasI	GGCGCC	1 cut(s)	982
Kzo9I	GATC	2 cut(s)	242, 848
LmnI	GCTCC	2 cut(s)	188, 821
Lsp1109I	GCAGC	5 cut(s)	178, 286, 334, 362, 728
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	140, 400, 1012
MaeIII	GTNAC	4 cut(s)	43, 77, 812, 832
MalI	GATC	2 cut(s)	244, 850
MboI	GATC	2 cut(s)	242, 848
MboII	GAAGA	5 cut(s)	131, 194, 266, 458, 668
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	502, 638
MluCI	AATT	4 cut(s)	34, 68, 249, 362
Mly113I	GGCGCC	1 cut(s)	983
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	6 cut(s)	115, 178, 281, 501, 517, 766
MroXI	GAANNNNTTC	2 cut(s)	141, 204
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	1 cut(s)	911
NarI	GGCGCC	1 cut(s)	983
NdeII	GATC	2 cut(s)	242, 848
NlaIII	CATG	4 cut(s)	85, 331, 811, 960
NlaIV	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
NspV	TTCGAA	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	141, 204
PfeI	GAWTC	3 cut(s)	218, 920, 1043
PkrI	GCNGC	6 cut(s)	193, 301, 349, 352, 718, 1051
PleI	GAGTC	1 cut(s)	785
PluTI	GGCGCC	1 cut(s)	986
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	785
Ppu21I	YACGTR	2 cut(s)	401, 1013
PshAI	GACNNNNGTC	1 cut(s)	455
Psp1406I	AACGTT	1 cut(s)	140
PspCI	CACGTG	1 cut(s)	401
PspN4I	GGNNCC	6 cut(s)	333, 500, 635, 823, 984, 1092
PspOMI	GGGCCC	1 cut(s)	498
PspPI	GGNCC	3 cut(s)	498, 499, 754
PstI	CTGCAG	2 cut(s)	304, 352
PstNI	CAGNNNCTG	2 cut(s)	347, 722
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	5 cut(s)	437, 604, 727, 896, 1011
RsaNI	GTAC	5 cut(s)	436, 603, 726, 895, 1010
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	6 cut(s)	192, 300, 348, 351, 717, 1050
Sau3AI	GATC	2 cut(s)	242, 848
Sau96I	GGNCC	3 cut(s)	498, 499, 754
SchI	GAGTC	1 cut(s)	785
SduI	GDGCHC	2 cut(s)	502, 638
SfcI	CTRYAG	3 cut(s)	61, 300, 348
SfoI	GGCGCC	1 cut(s)	984
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
Sse9I	AATT	4 cut(s)	34, 68, 249, 362
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	3 cut(s)	453, 757, 1050
SspDI	GGCGCC	1 cut(s)	982
SspI	AATATT	1 cut(s)	1004
SspMI	CTAG	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	226
TaaI	ACNGT	5 cut(s)	568, 580, 607, 730, 845
TaiI	ACGT	3 cut(s)	143, 403, 1015
TaqI	TCGA	2 cut(s)	475, 847
TaqII	GACCGA	1 cut(s)	1155
TasI	AATT	4 cut(s)	34, 68, 249, 362
TauI	GCSGC	1 cut(s)	1052
TfiI	GAWTC	3 cut(s)	218, 920, 1043
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	3 cut(s)	583, 832, 905
TseI	GCWGC	5 cut(s)	191, 299, 347, 350, 716
TspDTI	ATGAA	7 cut(s)	150, 168, 213, 507, 604, 713, 945
TspRI	CASTG	3 cut(s)	583, 832, 905
VpaK11BI	GGWCC	1 cut(s)	754
XapI	RAATTY	2 cut(s)	68, 362
XmiI	GTMKAC	1 cut(s)	609
XmnI	GAANNNNTTC	2 cut(s)	141, 204
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.