Rmu_sc0002426.1_g000010

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002426.1
OG0002997
Physical Location & Seq
Forward (+)
24334 .. 28886
4553 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1503 bp
atgtttagaaagaaggtgacgccaaaccctacttggctatttgattccattcgcttatattggcaactcggattccatgatggtagtcgatatagtggaaaagccttcgctcacttcctcacgcctaatgtcatcgtcgatccaatggcctcccaacttgctcgccgttggattagggccggttttgcctttgagcttgtccaggacaattatagccgagttagattggataataggagcccaatccgagaaggccattacaggttattgcaaaacgggtctttctacttttctagttcgcctgctcactctcttatcttccaccttcaaatgccgttctttcacctgagattgtctgctccatattcaacccttgatcatgttccgctgtttggttatgtggcggaagccaatcactttccacagaacacggagcatttgaattatcatttacgtgttctgaggaatcggtttccctcgtttgcctctgtctgttctttccctcaacttcattacattggagctatgcagatcagtgttggcatggatgagaaatgtgatattgctaacctcagccattctatagttagcagaaagccacgagagcagcaaaacgtaagaaaggaggttcagttaattggtcagaatgactctacagtaagtattagcaacgcagattacaaggaaagagaaagacgaaagaaaataggactagccaacaaaggaaaagtgccatggaacaaaggcaggaaacatagtgcagagacttgtgagcgcatcaagcgacaaaccatagaggccctaaaagaccccaaggttagaaagaagatgtcccagcgtccccgttctcatagtgtggagtccaaggcaaaaatgagttcttcacttagacggctttggggaaggcgtctaaaatggaaacagtcaagggagaaactcttcctgtcatgggtagaaagcatagcagaggcggctaagacaggtgggagtgaacaacaagagttaaattgggatagctatgagaatataagggaagaattatatctccaacagcttcagcaggctgcagagaagaaaaaggcaagggaacgggcaaagatgagagccaaggaagcagcagcacaagctaaagtaaaaaagaaggcaacgcgtgctgttgaaaggagagtagatagtgagacgaacaaagacaatgaagagttgacatctctgaaagggctgaaagttaagcagagatcaacgaagtttgacagagagacttccacaaatgatcaagttgctagtcgaagggacatagttaaatcgcaattgcatatctcagctttggagaaattggatgcagagcttataaagagagaaaaattgcgagcagaagtttcatttgcagaccagataagagctgccaaaaacagaaaaatggaacaagctatggcagccccatctgttggggtagtaaacgagaaaccagggatgcatacccatacacttctgcagtctcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

500

Amino Acids

57.87

Weight (kDa)

10.16

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 231 - 259 1.6e-06 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1349
AccB7I CCANNNNNTGG 1 cut(s) 1445
AccII CGCG 1 cut(s) 1150
AciI CCGC 3 cut(s) 386, 404, 971
AclWI GGATC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 1040
AcyI GRCGYC 2 cut(s) 20, 907
AfiI CCNNNNNNNGG 3 cut(s) 392, 949, 1445
AflIII ACRYGT 2 cut(s) 454, 1148
AgsI TTSAA 4 cut(s) 329, 369, 442, 1160
AjnI CCWGG 2 cut(s) 201, 1465
AluBI AGCT 9 cut(s) 196, 524, 1017, 1054, 1127, 1322, 1345, 1400, 1427
AluI AGCT 9 cut(s) 196, 524, 1017, 1054, 1127, 1322, 1345, 1400, 1427
Alw26I GTCTC 3 cut(s) 758, 1172, 1250
AlwI GGATC 1 cut(s) 134
AoxI GGCC 4 cut(s) 147, 177, 253, 798
ApeKI GCWGC 6 cut(s) 607, 1064, 1115, 1118, 1400, 1433
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 2 cut(s) 177, 799
AsuHPI GGTGA 2 cut(s) 28, 335
BanII GRGCYC 1 cut(s) 242
BauI CACGAG 1 cut(s) 600
BbvCI CCTCAGC 1 cut(s) 572
BbvI GCAGC 6 cut(s) 619, 1051, 1127, 1130, 1387, 1445
BccI CCATC 2 cut(s) 74, 1447
BceAI ACGGC 3 cut(s) 150, 319, 908
BciT130I CCWGG 2 cut(s) 203, 1467
BclI TGATCA 2 cut(s) 376, 1270
BcoDI GTCTC 3 cut(s) 758, 1172, 1250
BfaI CTAG 3 cut(s) 294, 713, 1281
BfmI CTRYAG 4 cut(s) 582, 654, 1065, 1490
BisI GCNGC 7 cut(s) 608, 972, 1065, 1116, 1119, 1401, 1434
BlsI GCNGC 7 cut(s) 609, 973, 1066, 1117, 1120, 1402, 1435
Bme1390I CCNGG 2 cut(s) 203, 1467
BmgT120I GGNCC 2 cut(s) 177, 799
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 2 cut(s) 203, 1467
BmsI GCATC 3 cut(s) 786, 1327, 1461
Bpu10I CCTNAGC 1 cut(s) 572
BsaAI YACGTR 1 cut(s) 455
BsaHI GRCGYC 2 cut(s) 20, 907
BsaJI CCNNGG 5 cut(s) 734, 813, 864, 1107, 1466
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 949, 1445
Bse118I RCCGGY 1 cut(s) 179
BseBI CCWGG 2 cut(s) 203, 1467
BseDI CCNNGG 5 cut(s) 734, 813, 864, 1107, 1466
BseGI GGATG 3 cut(s) 553, 1342, 1476
BseLI CCNNNNNNNGG 3 cut(s) 392, 949, 1445
BseMII CTCAG 4 cut(s) 338, 452, 586, 1332
BseXI GCAGC 6 cut(s) 619, 1051, 1127, 1130, 1387, 1445
BseYI CCCAGC 1 cut(s) 834
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 1 cut(s) 1150
BshFI GGCC 4 cut(s) 149, 179, 255, 800
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 3 cut(s) 817, 825, 1304
BslI CCNNNNNNNGG 3 cut(s) 392, 949, 1445
BsmAI GTCTC 3 cut(s) 758, 1172, 1250
BsmBI CGTCTC 1 cut(s) 1172
BsmFI GGGAC 3 cut(s) 817, 825, 1304
BsnI GGCC 4 cut(s) 149, 179, 255, 800
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 5 cut(s) 139, 376, 531, 1235, 1270
Bsp19I CCATGG 1 cut(s) 734
BspACI CCGC 3 cut(s) 386, 404, 971
BspANI GGCC 4 cut(s) 149, 179, 255, 800
BspCNI CTCAG 4 cut(s) 339, 453, 585, 1331
BspFNI CGCG 1 cut(s) 1150
BspLI GGNNCC 1 cut(s) 239
BspMAI CTGCAG 2 cut(s) 1069, 1494
BspPI GGATC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 5 cut(s) 734, 813, 864, 1107, 1466
BssMI GATC 5 cut(s) 139, 376, 531, 1235, 1270
BssNI GRCGYC 2 cut(s) 20, 907
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 4 cut(s) 734, 813, 864, 1107
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 203, 1467
Bst4CI ACNGT 2 cut(s) 658, 924
Bst6I CTCTTC 2 cut(s) 944, 1191
BstACI GRCGYC 2 cut(s) 20, 907
BstAPI GCANNNNNTGC 1 cut(s) 1151
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 5 cut(s) 163, 303, 1062, 1152, 1368
BstDEI CTNAG 7 cut(s) 347, 461, 572, 887, 975, 1318, 1497
BstDSI CCRYGG 1 cut(s) 734
BstF5I GGATG 3 cut(s) 553, 1342, 1476
BstFNI CGCG 1 cut(s) 1150
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 5 cut(s) 142, 379, 534, 1238, 1273
BstMAI GTCTC 3 cut(s) 758, 1172, 1250
BstMBI GATC 5 cut(s) 139, 376, 531, 1235, 1270
BstMWI GCNNNNNNNGC 8 cut(s) 185, 604, 781, 971, 1112, 1124, 1151, 1433
BstNI CCWGG 2 cut(s) 203, 1467
BstSCI CCNGG 2 cut(s) 201, 1465
BstSFI CTRYAG 4 cut(s) 582, 654, 1065, 1490
BstUI CGCG 1 cut(s) 1150
BstV1I GCAGC 6 cut(s) 619, 1051, 1127, 1130, 1387, 1445
BsuRI GGCC 4 cut(s) 149, 179, 255, 800
BtgI CCRYGG 1 cut(s) 734
BtsCI GGATG 3 cut(s) 553, 1342, 1476
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 5 cut(s) 163, 303, 1062, 1152, 1368
CfoI GCGC 1 cut(s) 777
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 177, 799
CseI GACGC 3 cut(s) 28, 827, 896
CviAII CATG 5 cut(s) 77, 380, 544, 735, 948
DdeI CTNAG 7 cut(s) 347, 461, 572, 887, 975, 1318, 1497
DpnI GATC 5 cut(s) 141, 378, 533, 1237, 1272
DpnII GATC 5 cut(s) 139, 376, 531, 1235, 1270
Eam1104I CTCTTC 2 cut(s) 944, 1191
EarI CTCTTC 2 cut(s) 944, 1191
EciI GGCGGA 1 cut(s) 419
Eco130I CCWWGG 4 cut(s) 734, 813, 864, 1107
Eco24I GRGCYC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 799
EcoRII CCWGG 2 cut(s) 201, 1465
EcoT14I CCWWGG 4 cut(s) 734, 813, 864, 1107
EcoT22I ATGCAT 1 cut(s) 1476
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 4 cut(s) 734, 813, 864, 1107
Esp3I CGTCTC 1 cut(s) 1172
FaeI CATG 5 cut(s) 80, 383, 547, 738, 951
FaqI GGGAC 3 cut(s) 817, 825, 1304
FatI CATG 5 cut(s) 76, 379, 543, 734, 947
FbaI TGATCA 2 cut(s) 376, 1270
Fnu4HI GCNGC 7 cut(s) 608, 972, 1065, 1116, 1119, 1401, 1434
FokI GGATG 3 cut(s) 560, 1349, 1483
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 7 cut(s) 608, 972, 1065, 1116, 1119, 1401, 1434
FspBI CTAG 3 cut(s) 294, 713, 1281
GlaI GCGC 1 cut(s) 776
GluI GCNGC 7 cut(s) 608, 972, 1065, 1116, 1119, 1401, 1434
GsaI CCCAGC 1 cut(s) 838
HaeIII GGCC 4 cut(s) 149, 179, 255, 800
HapII CCGG 1 cut(s) 180
HgaI GACGC 3 cut(s) 28, 827, 896
HhaI GCGC 1 cut(s) 777
Hin1I GRCGYC 2 cut(s) 20, 907
Hin1II CATG 5 cut(s) 80, 383, 547, 738, 951
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HincII GTYRAC 1 cut(s) 1203
HindII GTYRAC 1 cut(s) 1203
HinfI GANTC 5 cut(s) 44, 72, 466, 650, 860
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 28, 335
Hpy166II GTNNAC 3 cut(s) 992, 1203, 1456
Hpy188I TCNGA 5 cut(s) 71, 248, 462, 645, 1212
Hpy8I GTNNAC 3 cut(s) 992, 1203, 1456
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 7 cut(s) 7, 115, 245, 335, 897, 1135, 1281
HpyCH4III ACNGT 2 cut(s) 658, 924
HpyCH4IV ACGT 2 cut(s) 454, 615
HpyCH4V TGCA 9 cut(s) 271, 529, 761, 1067, 1312, 1340, 1385, 1474, 1492
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 604, 781, 971, 1112, 1124, 1151, 1433
HpyF3I CTNAG 7 cut(s) 347, 461, 572, 887, 975, 1318, 1497
HpySE526I ACGT 2 cut(s) 454, 615
Hsp92I GRCGYC 2 cut(s) 20, 907
Hsp92II CATG 5 cut(s) 80, 383, 547, 738, 951
HspAI GCGC 1 cut(s) 775
Ksp22I TGATCA 2 cut(s) 376, 1270
Kzo9I GATC 5 cut(s) 139, 376, 531, 1235, 1270
LmnI GCTCC 4 cut(s) 237, 364, 433, 521
Lsp1109I GCAGC 6 cut(s) 619, 1051, 1127, 1130, 1387, 1445
LweI GCATC 3 cut(s) 786, 1327, 1461
MaeI CTAG 3 cut(s) 294, 713, 1281
MaeII ACGT 2 cut(s) 454, 615
MaeIII GTNAC 1 cut(s) 16
MalI GATC 5 cut(s) 141, 378, 533, 1237, 1272
MboI GATC 5 cut(s) 139, 376, 531, 1235, 1270
MboII GAAGA 7 cut(s) 310, 838, 873, 931, 1046, 1084, 1208
MfeI CAATTG 1 cut(s) 1307
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 8 cut(s) 208, 442, 636, 1006, 1037, 1307, 1331, 1361
MluI ACGCGT 1 cut(s) 1148
MlyI GAGTC 2 cut(s) 644, 869
MmeI TCCRAC 2 cut(s) 149, 1072
Mph1103I ATGCAT 1 cut(s) 1476
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 4 cut(s) 635, 1004, 1227, 1299
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 203, 1467
MunI CAATTG 1 cut(s) 1307
MvaI CCWGG 2 cut(s) 203, 1467
MvnI CGCG 1 cut(s) 1150
MwoI GCNNNNNNNGC 8 cut(s) 185, 604, 781, 971, 1112, 1124, 1151, 1433
NcoI CCATGG 1 cut(s) 734
NdeII GATC 5 cut(s) 139, 376, 531, 1235, 1270
NlaIII CATG 5 cut(s) 80, 383, 547, 738, 951
NlaIV GGNNCC 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 1476
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 3 cut(s) 44, 72, 466
PflMI CCANNNNNTGG 1 cut(s) 1445
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 7 cut(s) 609, 973, 1066, 1117, 1120, 1402, 1435
PleI GAGTC 2 cut(s) 644, 868
PpsI GAGTC 2 cut(s) 644, 868
Ppu21I YACGTR 1 cut(s) 455
PsiI TTATAA 1 cut(s) 1349
Psp6I CCWGG 2 cut(s) 201, 1465
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 2 cut(s) 201, 1465
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 2 cut(s) 177, 799
PstI CTGCAG 2 cut(s) 1069, 1494
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 4 cut(s) 635, 1004, 1227, 1299
SatI GCNGC 7 cut(s) 608, 972, 1065, 1116, 1119, 1401, 1434
Sau3AI GATC 5 cut(s) 139, 376, 531, 1235, 1270
Sau96I GGNCC 2 cut(s) 177, 799
SchI GAGTC 2 cut(s) 644, 869
ScrFI CCNGG 2 cut(s) 203, 1467
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 3 cut(s) 786, 1327, 1461
SfcI CTRYAG 4 cut(s) 582, 654, 1065, 1490
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 8 cut(s) 208, 442, 636, 1006, 1037, 1307, 1331, 1361
SsiI CCGC 3 cut(s) 386, 404, 971
SspMI CTAG 3 cut(s) 294, 713, 1281
StyD4I CCNGG 2 cut(s) 201, 1465
StyI CCWWGG 4 cut(s) 734, 813, 864, 1107
TaaI ACNGT 2 cut(s) 658, 924
TaiI ACGT 2 cut(s) 457, 618
TaqI TCGA 3 cut(s) 88, 138, 1285
TasI AATT 8 cut(s) 208, 442, 636, 1006, 1037, 1307, 1331, 1361
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 3 cut(s) 44, 72, 466
Tru1I TTAA 4 cut(s) 635, 1004, 1227, 1299
Tru9I TTAA 4 cut(s) 635, 1004, 1227, 1299
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 6 cut(s) 607, 1064, 1115, 1118, 1400, 1433
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 3 cut(s) 500, 1209, 1368
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 1445
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 3 cut(s) 294, 713, 1281
Zsp2I ATGCAT 1 cut(s) 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.