Rmu_sc0002512.1_g000004

L-tryptophan--pyruvate aminotransferase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002512.1
OG0007287
Physical Location & Seq
Forward (+)
17929 .. 18807
879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
atgcaccctctcaacactgagctatatataatagagaagcatgaacgaggagaactaatactgagagcattgtcaatccaaaatcaacctattcgtgttcttagagaaggagacaaaatgtgcggcaccactgatcagaaccctaaccctgcaacccctaacaaaactccgtcagctaatggcaatggcacaacaaggtctagcgtttcacctgacactgtcctcaatctggaacagggtgacccaacaatgttcgaaccgtactggaaaaagatgggggacaagggtacgatggtgatctccggcagccagtggatgagctatgtcagcgacttcaccaacatctgcttttttatggagccagaatttgagggtgcggttagaagacttcatcggacggttgggaatgctgtggtggacggccgtcacattgtggtggggacaggctccacgcagctctaccaggcggcgctgtatgctctcacttctcctggtggggcggagccgatcagtgtcgtgtctgccgctccttactactcggtgagcctcattgaccccctccttaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004021 GO:0004838 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008793 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009641 GO:0009653 GO:0009683 GO:0009684 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009850 GO:0009851 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0010326 GO:0010817 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0019827 GO:0019842 GO:0022414 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0034754 GO:0036094 GO:0042221 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046483 GO:0047312 GO:0047635 GO:0048037 GO:0048364 GO:0048366 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050048 GO:0050362 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070279 GO:0070529 GO:0070546 GO:0070547 GO:0070548 GO:0071704 GO:0072330 GO:0080097 GO:0080098 GO:0080099 GO:0080100 GO:0080130 GO:0090567 GO:0097159 GO:0098542 GO:0098727 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
Alliinase_C

Protein Analysis

189

Amino Acids

20.7

Weight (kDa)

5.54

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 76 - 181 2.7e-36 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 527
AciI CCGC 5 cut(s) 123, 377, 467, 500, 525
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 365
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 2 cut(s) 263, 289
AfiI CCNNNNNNNGG 1 cut(s) 229
AjnI CCWGG 2 cut(s) 462, 490
AluBI AGCT 4 cut(s) 22, 176, 321, 457
AluI AGCT 4 cut(s) 22, 176, 321, 457
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 306, 454
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 1 cut(s) 472
AsuHPI GGTGA 5 cut(s) 201, 251, 307, 328, 553
AsuII TTCGAA 1 cut(s) 255
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 318, 466
BccI CCATC 2 cut(s) 268, 286
BceAI ACGGC 2 cut(s) 408, 436
BciT130I CCWGG 2 cut(s) 464, 492
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 473
BisI GCNGC 5 cut(s) 124, 307, 455, 468, 525
BlsI GCNGC 5 cut(s) 125, 308, 456, 469, 526
Bme1390I CCNGG 2 cut(s) 464, 492
BmiI GGNNCC 4 cut(s) 127, 360, 448, 504
BmrFI CCNGG 2 cut(s) 464, 492
BoxI GACNNNNGTC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 391
Bpu14I TTCGAA 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 269, 310
Bse3DI GCAATG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 2 cut(s) 464, 492
BseGI GGATG 1 cut(s) 321
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 9, 53
BseNI ACTGG 2 cut(s) 269, 310
BseRI GAGGAG 1 cut(s) 63
BseX3I CGGCCG 1 cut(s) 421
BseXI GCAGC 2 cut(s) 318, 466
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 423
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 424
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 2 cut(s) 293, 454
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 293, 454
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 1 cut(s) 423
Bsp119I TTCGAA 1 cut(s) 255
Bsp143I GATC 3 cut(s) 133, 297, 507
BspACI CCGC 5 cut(s) 123, 377, 467, 500, 525
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 2 cut(s) 10, 54
BspLI GGNNCC 4 cut(s) 127, 360, 448, 504
BspT104I TTCGAA 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 269, 310
BssMI GATC 3 cut(s) 133, 297, 507
Bst2UI CCWGG 2 cut(s) 464, 492
Bst4CI ACNGT 3 cut(s) 220, 261, 400
BstBI TTCGAA 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 18, 62, 101
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 3 cut(s) 136, 300, 510
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 3 cut(s) 133, 297, 507
BstMCI CGRYCG 1 cut(s) 424
BstMWI GCNNNNNNNGC 2 cut(s) 327, 476
BstNI CCWGG 2 cut(s) 464, 492
BstPAI GACNNNNGTC 1 cut(s) 423
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 462, 490
BstV1I GCAGC 2 cut(s) 318, 466
BstV2I GAAGAC 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 421
BsuRI GGCC 1 cut(s) 423
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 5 cut(s) 15, 129, 216, 317, 517
CfoI GCGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 262, 288
CviAII CATG 1 cut(s) 41
CviQI GTAC 2 cut(s) 262, 288
DdeI CTNAG 3 cut(s) 18, 62, 101
DpnI GATC 3 cut(s) 135, 299, 509
DpnII GATC 3 cut(s) 133, 297, 507
DraIII CACNNNGTG 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 421
EagI CGGCCG 1 cut(s) 421
EciI GGCGGA 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 421
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 462, 490
FaeI CATG 1 cut(s) 44
FaiI YATR 7 cut(s) 25, 27, 29, 42, 324, 356, 477
FaqI GGGAC 2 cut(s) 293, 454
FatI CATG 1 cut(s) 40
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 5 cut(s) 124, 307, 455, 468, 525
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 5 cut(s) 124, 307, 455, 468, 525
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 471
GluI GCNGC 5 cut(s) 124, 307, 455, 468, 525
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 1 cut(s) 423
HapII CCGG 1 cut(s) 303
HhaI GCGC 1 cut(s) 472
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HpaII CCGG 1 cut(s) 303
HphI GGTGA 5 cut(s) 201, 251, 307, 328, 553
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 138, 396
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 3 cut(s) 220, 261, 400
HpyCH4V TGCA 2 cut(s) 4, 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 476
HpyF3I CTNAG 3 cut(s) 18, 62, 101
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 133, 297, 507
LmnI GCTCC 4 cut(s) 358, 452, 502, 532
Lsp1109I GCAGC 2 cut(s) 318, 466
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 239, 425
MalI GATC 3 cut(s) 135, 299, 509
MbiI CCGCTC 1 cut(s) 527
MboI GATC 3 cut(s) 133, 297, 507
MboII GAAGA 1 cut(s) 396
MluCI AATT 2 cut(s) 365, 565
MnlI CCTC 6 cut(s) 18, 41, 233, 364, 557, 569
MseI TTAA 2 cut(s) 564, 568
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 464, 492
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 2 cut(s) 464, 492
MwoI GCNNNNNNNGC 2 cut(s) 327, 476
NdeII GATC 3 cut(s) 133, 297, 507
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 4 cut(s) 127, 360, 448, 504
NmuCI GTSAC 2 cut(s) 239, 425
NspV TTCGAA 1 cut(s) 255
PacI TTAATTAA 1 cut(s) 568
PctI GAATGC 1 cut(s) 412
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 5 cut(s) 125, 308, 456, 469, 526
PshAI GACNNNNGTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 462, 490
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 462, 490
PspN4I GGNNCC 4 cut(s) 127, 360, 448, 504
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 263, 289
RsaNI GTAC 2 cut(s) 262, 288
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 564, 568
SatI GCNGC 5 cut(s) 124, 307, 455, 468, 525
Sau3AI GATC 3 cut(s) 133, 297, 507
ScrFI CCNGG 2 cut(s) 464, 492
SetI ASST 7 cut(s) 24, 91, 178, 200, 214, 323, 459
SfuI TTCGAA 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 2 cut(s) 365, 565
SsiI CCGC 5 cut(s) 123, 377, 467, 500, 525
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 462, 490
TaaI ACNGT 3 cut(s) 220, 261, 400
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 365, 565
TauI GCSGC 3 cut(s) 126, 470, 527
Tru1I TTAA 2 cut(s) 564, 568
Tru9I TTAA 2 cut(s) 564, 568
TscAI CASTG 5 cut(s) 22, 136, 223, 317, 517
TseFI GTSAC 2 cut(s) 239, 425
TseI GCWGC 2 cut(s) 306, 454
Tsp45I GTSAC 2 cut(s) 239, 425
TspDTI ATGAA 2 cut(s) 57, 380
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 5 cut(s) 22, 136, 223, 317, 517
Tth111I GACNNNGTC 1 cut(s) 218
XapI RAATTY 1 cut(s) 365
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.