Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0007497

Physical Location & Seq

Genomic Coordinates Reverse (-)

4619 .. 5236

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgattatgatcgtgatcaccaaaattgggaatgtatcagctgatcttggtgcctgcccaaaatgtggtagcctagaagttccatacccttttagcactgatgatagctgtggagaccctagatataaaatctactgcaacaatggcaatgaacttcagttcatgtcagcagaagggtttaagtacaagatcctcagcatcgacttgagtgccaacaagctcattatacagccacctgatctgttagtggtggatgataccactactacatgttattcttcagatttctcttcacaaggcttaagactcgatgagcgcttgcccttcaacatttctactcgtaacaccgtgatgctgttcaattgctcggataatattctccgctcgcctctaaattgttcctcaaacagcttctgcaggcagattgaggataaggttgaggcgtgtagaggtaccctttgctgccatttcttgaaggattcccacatgacttcatacatgatcaggatcaggtctggaggctgcactgcctatacttccgttgtcgatattcgacctcaagatcctgttgataactggaactatggcattgagcttcaatggttgactcctaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind

Protein Analysis

205

Amino Acids

22.97

Weight (kDa)

5.0

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	19 - 76	6.8e-12	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007497)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00750 FvH4_6g07040
malus_domestica	MD04G1196600.v1.1
prunus_persica	Prupe.6G316900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456571 RchiOBHm_Chr3g0456581
rosa_laevigata	RLG00000025290 RLG00000025291 RLG00000025292
rosa_multiflora	Rmu_sc0000133.1_g000040 Rmu_sc0000190.1_g000016 Rmu_sc0002607.1_g000001 Rmu_sc0002607.1_g000002 Rmu_sc0017908.1_g000008 Rmu_sc0017908.1_g000011
rosa_roxburghii	Rroxscaffold_6G00422610
rosa_rugosa	Rorug03G0014000
rosa_samantha	Rh3BG076500 Rh3BG076600 Rh3CG076100 Rh3CG076200 Rh3DG078300 Rh3DG078400
rosa_wichuraiana	Rw3G006400 Rw3G006410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	2 cut(s)	50, 452
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	384
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	3 cut(s)	184, 515, 557
AcuI	CTGAAG	2 cut(s)	140, 264
AfaI	GTAC	2 cut(s)	185, 454
AfeI	AGCGCT	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	27, 65
AflII	CTTAAG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	328, 361, 475, 599
AluBI	AGCT	5 cut(s)	41, 108, 220, 411, 595
AluI	AGCT	5 cut(s)	41, 108, 220, 411, 595
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	3 cut(s)	184, 515, 557
AlwNI	CAGNNNCTG	1 cut(s)	414
Aor51HI	AGCGCT	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	462, 522
Asp718I	GGTACC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	10
BanI	GGYRCC	2 cut(s)	50, 452
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	449, 509
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BclI	TGATCA	2 cut(s)	15, 501
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	74, 120
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	319
BfrI	CTTAAG	1 cut(s)	301
BisI	GCNGC	2 cut(s)	463, 523
BlsI	GCNGC	2 cut(s)	464, 524
BmiI	GGNNCC	2 cut(s)	52, 454
BmsI	GCATC	2 cut(s)	207, 342
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	226, 543
BsaBI	GATNNNNATC	3 cut(s)	8, 14, 506
BsaI	GGTCTC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 65
Bse1I	ACTGG	1 cut(s)	581
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	3 cut(s)	8, 14, 506
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	3 cut(s)	8, 14, 506
BseLI	CCNNNNNNNGG	2 cut(s)	27, 65
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	581
BseXI	GCAGC	2 cut(s)	449, 509
BsgI	GTGCAG	1 cut(s)	508
BshNI	GGYRCC	2 cut(s)	50, 452
BslI	CCNNNNNNNGG	2 cut(s)	27, 65
BsmAI	GTCTC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	108
Bsp143I	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
BspACI	CCGC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	52, 454
BspMAI	CTGCAG	1 cut(s)	419
BspPI	GGATC	3 cut(s)	184, 515, 557
BspT107I	GGYRCC	2 cut(s)	50, 452
BspTI	CTTAAG	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	581
BssMI	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	55, 320, 386, 419
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	8 cut(s)	12, 18, 46, 192, 241, 504, 510, 565
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	415
BstV1I	GCAGC	2 cut(s)	449, 509
BstX2I	RGATCY	2 cut(s)	189, 562
BstYI	RGATCY	2 cut(s)	189, 562
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	96, 525
Cac8I	GCNNGC	4 cut(s)	55, 320, 386, 419
CaiI	CAGNNNCTG	1 cut(s)	414
CfoI	GCGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	184, 453
CviAII	CATG	4 cut(s)	163, 270, 487, 499
CviJI	RGCY	9 cut(s)	41, 72, 108, 220, 232, 300, 411, 522, 595
CviKI_1	RGCY	9 cut(s)	41, 72, 108, 220, 232, 300, 411, 522, 595
CviQI	GTAC	2 cut(s)	184, 453
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	8 cut(s)	11, 17, 45, 191, 240, 503, 509, 564
DpnII	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	108
Eco47III	AGCGCT	1 cut(s)	317
Eco57I	CTGAAG	2 cut(s)	140, 264
FaeI	CATG	4 cut(s)	166, 273, 490, 502
FatI	CATG	4 cut(s)	162, 269, 486, 498
FbaI	TGATCA	2 cut(s)	15, 501
Fnu4HI	GCNGC	2 cut(s)	463, 523
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	463, 523
FspBI	CTAG	2 cut(s)	74, 120
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	463, 523
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	319
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	166, 273, 490, 502
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	3 cut(s)	306, 479, 607
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	2 cut(s)	283, 370
Hpy188III	TCNNGA	5 cut(s)	13, 472, 505, 516, 560
Hpy8I	GTNNAC	1 cut(s)	606
HpyAV	CCTTC	3 cut(s)	167, 334, 469
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	138, 417, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	166, 273, 490, 502
HspAI	GCGC	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	456
Ksp22I	TGATCA	2 cut(s)	15, 501
Kzo9I	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
LpnPI	CCDG	8 cut(s)	67, 249, 403, 490, 496, 501, 562, 579
Lsp1109I	GCAGC	2 cut(s)	449, 509
LweI	GCATC	2 cut(s)	207, 342
MaeI	CTAG	2 cut(s)	74, 120
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	8 cut(s)	11, 17, 45, 191, 240, 503, 509, 564
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
MboII	GAAGA	2 cut(s)	270, 282
MfeI	CAATTG	1 cut(s)	361
MflI	RGATCY	2 cut(s)	189, 562
MluCI	AATT	3 cut(s)	24, 361, 394
MlyI	GAGTC	2 cut(s)	300, 601
MnlI	CCTC	8 cut(s)	203, 399, 412, 421, 433, 443, 512, 567
MseI	TTAA	2 cut(s)	180, 302
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
NlaIII	CATG	4 cut(s)	166, 273, 490, 502
NlaIV	GGNNCC	2 cut(s)	52, 454
NspI	RCATGY	1 cut(s)	273
PciI	ACATGT	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	464, 524
PleI	GAGTC	2 cut(s)	300, 601
PpsI	GAGTC	2 cut(s)	300, 601
PscI	ACATGT	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	52, 454
PstI	CTGCAG	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	414
PsuI	RGATCY	2 cut(s)	189, 562
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	185, 454
RsaNI	GTAC	2 cut(s)	184, 453
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	180, 302
SatI	GCNGC	2 cut(s)	463, 523
Sau3AI	GATC	8 cut(s)	9, 15, 43, 189, 238, 501, 507, 562
SchI	GAGTC	2 cut(s)	300, 601
SfaNI	GCATC	2 cut(s)	207, 342
SfcI	CTRYAG	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	3 cut(s)	205, 301, 558
SmoI	CTYRAG	3 cut(s)	205, 301, 558
Sse9I	AATT	3 cut(s)	24, 361, 394
SsiI	CCGC	1 cut(s)	382
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	74, 120
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	4 cut(s)	201, 309, 546, 553
TasI	AATT	3 cut(s)	24, 361, 394
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	180, 302
Tru9I	TTAA	2 cut(s)	180, 302
TscAI	CASTG	2 cut(s)	103, 532
TseI	GCWGC	2 cut(s)	462, 522
TspDTI	ATGAA	3 cut(s)	151, 165, 483
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	2 cut(s)	103, 532
Van91I	CCANNNNNTGG	1 cut(s)	65
Vha464I	CTTAAG	1 cut(s)	301
XceI	RCATGY	1 cut(s)	273
XspI	CTAG	2 cut(s)	74, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.