Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002766.1

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

21049 .. 22934

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgcatgatttgtgccttgaggtgattgacaaccgaggtgagagttgtgccatctcaagattgacaaaggagaacaaggttgctgatttggaagtagcaaagacgaggagacaccgctgcccacatactagattggttctagtagatgagttgtgtaagatctttatagcttcaccgcagctcctccgccatgggactcgtccgcaccaagatcgtgaagaagtcctcctggcaggtgatcgaacggtactactcgcgcatgaccctcgacttccacaccaacaagaaggtcatggaggatctgcaaaaatccagtcgaagcgcctccgcaacaagatcaccggattctcaacccatctcatgaagcgcatccagaagggccccgtccgcgtcatctccctcaagctccaggaggaggagagcgagcgccgcatggactttgtccccgatgagtccgccatgaagaccgacgagatcgccgtcgacaaggtgaccctcgacatgctcactgctctcggcatggcgggtattcccggagtcaagaaggtggatccctttgatctccagactgcgctgatcgggtactgccccaggaggtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

200

Amino Acids

22.66

Weight (kDa)

9.01

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	102 - 183	6.8e-30	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	2 cut(s)	257, 390
AciI	CCGC	9 cut(s)	115, 176, 187, 203, 328, 388, 430, 456, 524
AclWI	GGATC	3 cut(s)	307, 545, 558
AfaI	GTAC	3 cut(s)	249, 584, 599
AfiI	CCNNNNNNNGG	1 cut(s)	415
AjnI	CCWGG	3 cut(s)	228, 408, 590
AluBI	AGCT	3 cut(s)	170, 181, 406
AluI	AGCT	3 cut(s)	170, 181, 406
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	3 cut(s)	307, 545, 558
AoxI	GGCC	1 cut(s)	379
ApaI	GGGCCC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	117, 178
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AspLEI	GCGC	5 cut(s)	259, 324, 369, 429, 574
AspS9I	GGNCC	2 cut(s)	379, 380
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	6 cut(s)	34, 50, 165, 248, 331, 502
BaeGI	GKGCMC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	104, 190
BccI	CCATC	2 cut(s)	59, 363
BceAI	ACGGC	1 cut(s)	464
BcgI	CGANNNNNNTGC	4 cut(s)	194, 228, 248, 282
BciT130I	CCWGG	3 cut(s)	230, 410, 592
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	3 cut(s)	129, 140, 601
BfoI	RGCGCY	2 cut(s)	325, 430
BfuAI	ACCTGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	3 cut(s)	118, 179, 430
BlsI	GCNGC	3 cut(s)	119, 180, 431
Bme1390I	CCNGG	4 cut(s)	230, 410, 534, 592
BmgT120I	GGNCC	2 cut(s)	379, 380
BmiI	GGNNCC	3 cut(s)	381, 382, 552
BmrFI	CCNGG	4 cut(s)	230, 410, 534, 592
BmsI	GCATC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	2 cut(s)	392, 548
BpuEI	CTTGAG	3 cut(s)	38, 40, 386
BpuMI	CCSGG	1 cut(s)	534
BsaJI	CCNNGG	3 cut(s)	34, 190, 590
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	3 cut(s)	230, 410, 592
BseDI	CCNNGG	3 cut(s)	34, 190, 590
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	4 cut(s)	121, 173, 428, 431
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	104, 190
Bsh1236I	CGCG	2 cut(s)	257, 390
BshFI	GGCC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	342, 534
BslFI	GGGAC	2 cut(s)	208, 428
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	208, 428
BsnI	GGCC	1 cut(s)	381
Bsp120I	GGGCCC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	9 cut(s)	115, 176, 187, 203, 328, 388, 430, 456, 524
BspANI	GGCC	1 cut(s)	381
BspFNI	CGCG	2 cut(s)	257, 390
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	381, 382, 552
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	3 cut(s)	307, 545, 558
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	3 cut(s)	34, 190, 590
BssMI	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	3 cut(s)	230, 410, 592
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	425
BstDSI	CCRYGG	1 cut(s)	190
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	2 cut(s)	257, 390
BstH2I	RGCGCY	2 cut(s)	325, 430
BstHHI	GCGC	5 cut(s)	259, 324, 369, 429, 574
BstKTI	GATC	9 cut(s)	162, 214, 241, 302, 339, 477, 553, 562, 579
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 429
BstNI	CCWGG	3 cut(s)	230, 410, 592
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	4 cut(s)	228, 408, 532, 590
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	2 cut(s)	257, 390
BstV1I	GCAGC	2 cut(s)	104, 190
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	3 cut(s)	159, 299, 550
BstYI	RGATCY	3 cut(s)	159, 299, 550
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	425
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	5 cut(s)	259, 324, 369, 429, 574
Cfr13I	GGNCC	2 cut(s)	379, 380
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	248, 583, 598
CviAII	CATG	9 cut(s)	5, 191, 260, 293, 361, 433, 460, 502, 520
CviJI	RGCY	4 cut(s)	170, 181, 381, 406
CviKI_1	RGCY	4 cut(s)	170, 181, 381, 406
CviQI	GTAC	3 cut(s)	248, 583, 598
DpnI	GATC	9 cut(s)	161, 213, 240, 301, 338, 476, 552, 561, 578
DpnII	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
EciI	GGCGGA	2 cut(s)	176, 445
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	490
EcoO109I	RGGNCCY	2 cut(s)	379, 380
EcoO65I	GGTNACC	1 cut(s)	490
EcoRII	CCWGG	3 cut(s)	228, 408, 590
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	9 cut(s)	8, 194, 263, 296, 364, 436, 463, 505, 523
FaqI	GGGAC	2 cut(s)	208, 428
FatI	CATG	9 cut(s)	4, 190, 259, 292, 360, 432, 459, 501, 519
FauI	CCCGC	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	118, 179, 430
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	3 cut(s)	118, 179, 430
FspBI	CTAG	3 cut(s)	129, 140, 601
GlaI	GCGC	5 cut(s)	258, 323, 368, 428, 573
GluI	GCNGC	3 cut(s)	118, 179, 430
GsuI	CTGGAG	2 cut(s)	392, 548
HaeII	RGCGCY	2 cut(s)	325, 430
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	2 cut(s)	342, 534
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	5 cut(s)	259, 324, 369, 429, 574
Hin1II	CATG	9 cut(s)	8, 194, 263, 296, 364, 436, 463, 505, 523
Hin6I	GCGC	5 cut(s)	257, 322, 367, 427, 572
HinP1I	GCGC	5 cut(s)	257, 322, 367, 427, 572
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	196, 345, 452, 537
HpaII	CCGG	2 cut(s)	342, 534
HphI	GGTGA	6 cut(s)	34, 50, 165, 248, 331, 502
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188III	TCNNGA	6 cut(s)	57, 215, 361, 373, 541, 565
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	2 cut(s)	473, 485
HpyAV	CCTTC	3 cut(s)	281, 370, 538
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	4, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 429
Hsp92II	CATG	9 cut(s)	8, 194, 263, 296, 364, 436, 463, 505, 523
HspAI	GCGC	5 cut(s)	257, 322, 367, 427, 572
Kzo9I	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
LmnI	GCTCC	2 cut(s)	186, 411
Lsp1109I	GCAGC	2 cut(s)	104, 190
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	3 cut(s)	129, 140, 601
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	9 cut(s)	161, 213, 240, 301, 338, 476, 552, 561, 578
MboI	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
MboII	GAAGA	2 cut(s)	230, 475
MflI	RGATCY	3 cut(s)	159, 299, 550
MhlI	GDGCHC	1 cut(s)	383
MlyI	GAGTC	3 cut(s)	190, 461, 546
Mph1103I	ATGCAT	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	342, 534
MspR9I	CCNGG	4 cut(s)	230, 410, 534, 592
MvaI	CCWGG	3 cut(s)	230, 410, 592
MvnI	CGCG	2 cut(s)	257, 390
MwoI	GCNNNNNNNGC	2 cut(s)	387, 429
NciI	CCSGG	1 cut(s)	534
NcoI	CCATGG	1 cut(s)	190
NdeII	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
NlaIII	CATG	9 cut(s)	8, 194, 263, 296, 364, 436, 463, 505, 523
NlaIV	GGNNCC	3 cut(s)	381, 382, 552
NmeAIII	GCCGAG	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	505
PagI	TCATGA	1 cut(s)	360
PaqCI	CACCTGC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	345
PflFI	GACNNNGTC	1 cut(s)	440
PfoI	TCCNGGA	2 cut(s)	408, 532
PkrI	GCNGC	3 cut(s)	119, 180, 431
PleI	GAGTC	3 cut(s)	190, 460, 545
PpsI	GAGTC	3 cut(s)	190, 460, 545
Psp6I	CCWGG	3 cut(s)	228, 408, 590
PspEI	GGTNACC	1 cut(s)	490
PspGI	CCWGG	3 cut(s)	228, 408, 590
PspN4I	GGNNCC	3 cut(s)	381, 382, 552
PspOMI	GGGCCC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	379, 380
PsuI	RGATCY	3 cut(s)	159, 299, 550
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	3 cut(s)	249, 584, 599
RsaNI	GTAC	3 cut(s)	248, 583, 598
SalI	GTCGAC	1 cut(s)	482
SatI	GCNGC	3 cut(s)	118, 179, 430
Sau3AI	GATC	9 cut(s)	159, 211, 238, 299, 336, 474, 550, 559, 576
Sau96I	GGNCC	2 cut(s)	379, 380
SchI	GAGTC	3 cut(s)	190, 461, 546
ScrFI	CCNGG	4 cut(s)	230, 410, 534, 592
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	1 cut(s)	378
SmlI	CTYRAG	3 cut(s)	17, 55, 401
SmoI	CTYRAG	3 cut(s)	17, 55, 401
SsiI	CCGC	9 cut(s)	115, 176, 187, 203, 328, 388, 430, 456, 524
SspMI	CTAG	3 cut(s)	129, 140, 601
StyD4I	CCNGG	4 cut(s)	228, 408, 532, 590
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	5 cut(s)	241, 268, 317, 483, 498
TaqII	GACCGA	1 cut(s)	482
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	345
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	117, 178
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	377, 476
TspRI	CASTG	1 cut(s)	514
Tth111I	GACNNNGTC	1 cut(s)	440
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	3 cut(s)	129, 140, 601
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.