Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002819.1

Orthogroup ID

OG0002714

Physical Location & Seq

Genomic Coordinates Reverse (-)

40301 .. 48803

Gene Structure 8503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

atgggcaagtcacgcaagtattcaaaagggcagctatctggttttgtgccggattatcgtcacgctgttgagaccatgggggaatcagaagggtttggaagctcaggacgggtggacgcagaaatgacagcttcggaagattcgtgtgcgccttctaaaaggaaatgcattagtttgaatgttgatggttatgatagttttgggttgcctatgcaagtgcttcagctgtcaagaatgtctcggactgaaaggaaggatttagaagtgaggctgaatttggagctggaacaggtccgggaccttcagaagaaaattgcagctatgagttcagctattgtgttatccccatctagtgatattcggagttgcagtgatgggaaaaccagacctccagtcgaggcttaccatagaccgtctgaaccaactgcgcctcagggtaagaaacgagctcctcctgggcgtaatggttctcgcaacaaaaagagcttatctgcgcatgtggagtctgtgaagccagttgccgcttcaaatgctcagttgatgaaacaatgtgagggtgtgctaaatctgttgatgaaacatacatatgcttgggttttcaaacatcctgtagacgtcgtgaagttgaatattccggattattttactgtcattaagcatccaatggatttgggcactgtgaagagcaagatgacttctggtggatactctaatccattaagttttgctgctgatgtgcggcttacattctcaaatgcaatgacttacaatccacctggaaatgatgtacatattatggctgagacactcagtaaatattttgaacagaagtggaaggcaatagaaaagaagcttcctgttgatgtggatcctttgccttttagagcagctcttcatacggaaatcatagaaactgctacacctatgccaccctcaaagaagaagaaaactataccaaatgatagtagcttcaagccagtcaagcctgtcaagccagaagctcttaaatgcatcatgactgaggaggagaagcataaactgaccgaggaggtggattctttgctgggagaattgcctgaaagcattattgatttcttaaaggagcatagtggtgaagggcaaaccagtgaggatgagattgagattgactttgaggttctcagtgatgatactttatttgcattgcggaagcttgttgatgaatatctgctggataaagagaaaaggcaggagaaaaatgaaccttgtgaaatggagatccttaatgagccgggatttagcaactcttcactgcatccatgcaatgacatggttgatgaggatgtggatattgttggtggaaacgatgctcctatatcaagcttccctcctgtagagattgagaaagatgcagctcatagaaacagtaaattcagtagctcaagtagctccagtagtgaatcaggctcttcgtctagtgattctgactctgccagttcttcagaaagtgaatcacgtgttcctaaagcttcacctgcatttggtggaggaaaggaaaagtttggttcaggagcaaattcagatcaaaagagaagtgatcttggtgattctgaaattggcaaagatccaatcaatgggggtgtcccagttgagcagaaatccccgtctaaaccaatttctgtcgaggagggtgaacgacaagaggaggagagtgctccacctgagaggcaggtctcccctgaaaagctctaccgcgcagctgtactgaggaatcggtttgcagacacaatatttaaagccaaagagaaggcacttgaaaaggtttgttacctttacctcacttggcaacatatatgcatacaatctccgaaagtggaggctcctgtggttattgtcaccggagcttctagaggaattggcaaggctgttgccctcgctttcggaaaatctggttgtaaggtgcttgtaaactatgcaaggtcatataaggaagccgaacaagtttccaaggagattgaggaatctggtggtcaagctctgacgtttgggggtgatgtttcaaaggaagaagatgtagctgcaatgattaaaactgtggttgatgcgtggggaacagttgatgtcttggttaacaatgcaggaataacacgggatggcttgttgatgagaatgaaaaaatcccaatggcaggaggttattgatttgaatcttactggtgtatttttatgcacacaggctgcagccaaagttatgatgaaacaaagaaagggaagaattatcaatatagcatctgttgttggtcttgttggcaatgttggacaagccaactacagcgctgcaaaagcaggggtaattggcttcacaaagagtgttgcaaaagaatattcaagcaggaacatcaatgtcaatgctgtagctcctggatttattgcgtctgatatgactgccaagctgggagaagacatagaaaagaaaatcattgggtccatccccttagggcgatatggtcaacctgaagaagttgctggactggtggaattcctggctcttaatcctgctgctggttacattactggacaggtgttgaccattgatggaggaatggtgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

863

Amino Acids

93.85

Weight (kDa)

5.84

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	184 - 268	1.3e-18	Bromodomain
BET	PF17035	339 - 400	4.4e-16	Bromodomain extra-terminal - transcription regulation
adh_short	PF00106	622 - 814	1.8e-65	short chain dehydrogenase
KR	PF08659	623 - 794	1.4e-19	KR domain
adh_short_C2	PF13561	627 - 861	1.6e-63	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63320 AT5G63320 AT5G63320
fragaria_vesca	FvH4_2g09340 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g07690 FvH4_5g15310 FvH4_7g03961
malus_domestica	MD06G1147900.v1.1 MD14G1162200.v1.1
prunus_persica	Prupe.5G154800_v2.0.a1
pyrus_communis	pycom06g13720 pycom06g13730 pycom14g13510 pycom72g00010
rosa_chinensis	RchiOBHm_Chr7g0190781
rosa_laevigata	RLG00000004496 RLG00000004499
rosa_multiflora	Rmu_co8422347.1_g000001 Rmu_sc0002819.1_g000007
rosa_roxburghii	Rroxscaffold_3G00264320
rosa_rugosa	Rorug06G0506700 Rorug06G0506700 Rorug06G0506700 Rorug06G0506800
rosa_samantha	Rh7AG113500 Rh7BG116000 Rh7CG118600 Rh7DG117500
rosa_wichuraiana	Rw7G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1522
AatII	GACGTC	1 cut(s)	618
Acc16I	TGCGCA	1 cut(s)	495
Acc36I	ACCTGC	2 cut(s)	1522, 1699
AccB7I	CCANNNNNTGG	1 cut(s)	1613
AccI	GTMKAC	1 cut(s)	612
AccII	CGCG	1 cut(s)	1734
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	4 cut(s)	522, 739, 1186, 1732
AclWI	GGATC	4 cut(s)	863, 876, 1252, 1598
AcsI	RAATTY	4 cut(s)	274, 1409, 1555, 2516
AcuI	CTGAAG	4 cut(s)	206, 287, 1464, 2514
AcvI	CACGTG	1 cut(s)	1496
AcyI	GRCGYC	1 cut(s)	615
AfaI	GTAC	2 cut(s)	789, 1743
AfeI	AGCGCT	1 cut(s)	2314
AfiI	CCNNNNNNNGG	4 cut(s)	1520, 1613, 2167, 2540
AflIII	ACRYGT	1 cut(s)	1495
AhdI	GACNNNNNGTC	1 cut(s)	392
AjnI	CCWGG	4 cut(s)	454, 775, 2398, 2520
Alw21I	GWGCWC	2 cut(s)	451, 1696
Alw26I	GTCTC	4 cut(s)	65, 243, 797, 1717
AlwI	GGATC	4 cut(s)	863, 876, 1252, 1598
Aor13HI	TCCGGA	1 cut(s)	634
Aor51HI	AGCGCT	1 cut(s)	2314
ApoI	RAATTY	4 cut(s)	274, 1409, 1555, 2516
AspLEI	GCGC	5 cut(s)	151, 430, 496, 1736, 2315
AspS9I	GGNCC	3 cut(s)	292, 298, 2463
AsuC2I	CCSGG	2 cut(s)	296, 1272
AsuHPI	GGTGA	6 cut(s)	1124, 1503, 1595, 1682, 1867, 2042
AvaII	GGWCC	3 cut(s)	292, 298, 2463
AxyI	CCTNAGG	2 cut(s)	432, 2473
BaeGI	GKGCMC	1 cut(s)	677
BamHI	GGATCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	451
BbrPI	CACGTG	1 cut(s)	1496
BbsI	GAAGAC	1 cut(s)	2445
Bbv12I	GWGCWC	2 cut(s)	451, 1696
BccI	CCATC	6 cut(s)	179, 355, 368, 2126, 2474, 2567
BciT130I	CCWGG	4 cut(s)	456, 777, 2400, 2522
BciVI	GTATCC	1 cut(s)	698
BcnI	CCSGG	2 cut(s)	296, 1272
BcoDI	GTCTC	4 cut(s)	65, 243, 797, 1717
BfaI	CTAG	3 cut(s)	351, 1455, 1887
BfmI	CTRYAG	5 cut(s)	609, 1371, 2217, 2308, 2391
BfoI	RGCGCY	1 cut(s)	2316
BfuAI	ACCTGC	2 cut(s)	1522, 1699
BfuI	GTATCC	1 cut(s)	698
Bme1390I	CCNGG	6 cut(s)	296, 456, 777, 1272, 2400, 2522
Bme18I	GGWCC	3 cut(s)	292, 298, 2463
BmeRI	GACNNNNNGTC	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	292, 298, 2463
BmiI	GGNNCC	4 cut(s)	299, 870, 1860, 2464
BmrFI	CCNGG	6 cut(s)	296, 456, 777, 1272, 2400, 2522
BmrI	ACTGGG	1 cut(s)	1619
BmsI	GCATC	7 cut(s)	667, 1020, 1303, 1336, 1378, 2071, 2276
BmuI	ACTGGG	1 cut(s)	1619
BpiI	GAAGAC	1 cut(s)	2445
BpmI	CTGGAG	2 cut(s)	375, 1414
Bpu10I	CCTNAGC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	1405
BpuMI	CCSGG	2 cut(s)	296, 1272
BsaAI	YACGTR	1 cut(s)	1496
BsaBI	GATNNNNATC	3 cut(s)	867, 1203, 2184
BsaHI	GRCGYC	1 cut(s)	615
BsaI	GGTCTC	2 cut(s)	65, 1717
BsaJI	CCNNGG	4 cut(s)	75, 455, 1044, 1986
BsaWI	WCCGGW	2 cut(s)	634, 1877
BsaXI	ACNNNNNCTCC	5 cut(s)	355, 373, 385, 403, 2568
Bsc4I	CCNNNNNNNGG	4 cut(s)	1520, 1613, 2167, 2540
Bse21I	CCTNAGG	2 cut(s)	432, 2473
Bse3DI	GCAATG	5 cut(s)	765, 1181, 1309, 2067, 2296
Bse8I	GATNNNNATC	3 cut(s)	867, 1203, 2184
BseAI	TCCGGA	1 cut(s)	634
BseBI	CCWGG	4 cut(s)	456, 777, 2400, 2522
BseDI	CCNNGG	4 cut(s)	75, 455, 1044, 1986
BseGI	GGATG	7 cut(s)	604, 658, 1138, 1294, 1327, 2137, 2466
BseJI	GATNNNNATC	3 cut(s)	867, 1203, 2184
BseLI	CCNNNNNNNGG	4 cut(s)	1520, 1613, 2167, 2540
BseMI	GCAATG	5 cut(s)	765, 1181, 1309, 2067, 2296
BseMII	CTCAG	9 cut(s)	117, 446, 548, 792, 823, 1011, 1174, 1692, 1736
BseRI	GAGGAG	7 cut(s)	441, 1037, 1040, 1061, 1679, 1697, 1700
BseSI	GKGCMC	1 cut(s)	677
BseYI	CCCAGC	2 cut(s)	1063, 2431
Bsh1236I	CGCG	1 cut(s)	1734
BsiHKAI	GWGCWC	2 cut(s)	451, 1696
BsiSI	CCGG	5 cut(s)	50, 295, 635, 1271, 1878
BslFI	GGGAC	2 cut(s)	311, 1607
BslI	CCNNNNNNNGG	4 cut(s)	1520, 1613, 2167, 2540
BsmAI	GTCTC	4 cut(s)	65, 243, 797, 1717
BsmFI	GGGAC	2 cut(s)	311, 1607
Bso31I	GGTCTC	2 cut(s)	65, 1717
Bsp1286I	GDGCHC	3 cut(s)	451, 677, 1696
Bsp13I	TCCGGA	1 cut(s)	634
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	4 cut(s)	522, 739, 1186, 1732
BspCNI	CTCAG	9 cut(s)	116, 445, 547, 793, 822, 1012, 1173, 1693, 1737
BspEI	TCCGGA	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	1734
BspHI	TCATGA	1 cut(s)	1014
BspLI	GGNNCC	4 cut(s)	299, 870, 1860, 2464
BspMAI	CTGCAG	1 cut(s)	2221
BspMI	ACCTGC	2 cut(s)	1522, 1699
BspPI	GGATC	4 cut(s)	863, 876, 1252, 1598
BspQI	GCTCTTC	3 cut(s)	677, 897, 1453
BspTNI	GGTCTC	2 cut(s)	65, 1717
BsrDI	GCAATG	5 cut(s)	765, 1181, 1309, 2067, 2296
BsrGI	TGTACA	1 cut(s)	787
BssECI	CCNNGG	4 cut(s)	75, 455, 1044, 1986
BssMI	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
BssNI	GRCGYC	1 cut(s)	615
BssT1I	CCWWGG	2 cut(s)	75, 1986
Bst2UI	CCWGG	4 cut(s)	456, 777, 2400, 2522
Bst4CI	ACNGT	6 cut(s)	414, 649, 679, 1406, 2074, 2095
Bst6I	CTCTTC	4 cut(s)	677, 897, 1291, 1453
BstACI	GRCGYC	1 cut(s)	615
BstAUI	TGTACA	1 cut(s)	787
BstBAI	YACGTR	1 cut(s)	1496
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	7 cut(s)	604, 658, 1138, 1294, 1327, 2137, 2466
BstFNI	CGCG	1 cut(s)	1734
BstH2I	RGCGCY	1 cut(s)	2316
BstHHI	GCGC	5 cut(s)	151, 430, 496, 1736, 2315
BstKTI	GATC	5 cut(s)	871, 1260, 1564, 1579, 1606
BstMAI	GTCTC	4 cut(s)	65, 243, 797, 1717
BstMBI	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 530, 982, 991, 1425, 1514, 2321
BstNI	CCWGG	4 cut(s)	456, 777, 2400, 2522
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	6 cut(s)	294, 454, 775, 1270, 2398, 2520
BstSFI	CTRYAG	5 cut(s)	609, 1371, 2217, 2308, 2391
BstSLI	GKGCMC	1 cut(s)	677
BstUI	CGCG	1 cut(s)	1734
BstV2I	GAAGAC	1 cut(s)	2445
BstX2I	RGATCY	3 cut(s)	868, 1257, 1603
BstYI	RGATCY	3 cut(s)	868, 1257, 1603
Bsu36I	CCTNAGG	2 cut(s)	432, 2473
BsuI	GTATCC	1 cut(s)	698
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	7 cut(s)	604, 658, 1138, 1294, 1327, 2137, 2466
BtsI	GCAGTG	2 cut(s)	376, 1289
BtsIMutI	CAGTG	5 cut(s)	376, 675, 1132, 1168, 1289
BveI	ACCTGC	2 cut(s)	1522, 1699
CciI	TCATGA	1 cut(s)	1014
CfoI	GCGC	5 cut(s)	151, 430, 496, 1736, 2315
Cfr13I	GGNCC	3 cut(s)	292, 298, 2463
CseI	GACGC	2 cut(s)	125, 2400
Csp6I	GTAC	2 cut(s)	788, 1742
CviAII	CATG	5 cut(s)	76, 497, 1015, 1299, 1309
CviQI	GTAC	2 cut(s)	788, 1742
DpnI	GATC	5 cut(s)	870, 1259, 1563, 1578, 1605
DpnII	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
DraI	TTTAAA	1 cut(s)	1774
DriI	GACNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	4 cut(s)	677, 897, 1291, 1453
Eam1105I	GACNNNNNGTC	1 cut(s)	392
EarI	CTCTTC	4 cut(s)	677, 897, 1291, 1453
Ecl136II	GAGCTC	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	75, 1986
Eco24I	GRGCYC	1 cut(s)	451
Eco31I	GGTCTC	2 cut(s)	65, 1717
Eco47I	GGWCC	3 cut(s)	292, 298, 2463
Eco47III	AGCGCT	1 cut(s)	2314
Eco53kI	GAGCTC	1 cut(s)	449
Eco57I	CTGAAG	4 cut(s)	206, 287, 1464, 2514
Eco72I	CACGTG	1 cut(s)	1496
Eco81I	CCTNAGG	2 cut(s)	432, 2473
EcoICRI	GAGCTC	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	2516
EcoRII	CCWGG	4 cut(s)	454, 775, 2398, 2520
EcoT14I	CCWWGG	2 cut(s)	75, 1986
EcoT22I	ATGCAT	3 cut(s)	170, 1013, 1838
EcoT38I	GRGCYC	1 cut(s)	451
ErhI	CCWWGG	2 cut(s)	75, 1986
FaeI	CATG	5 cut(s)	79, 500, 1018, 1302, 1312
FaqI	GGGAC	2 cut(s)	311, 1607
FatI	CATG	5 cut(s)	75, 496, 1014, 1298, 1308
FauNDI	CATATG	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	612
FokI	GGATG	7 cut(s)	591, 645, 1145, 1281, 1334, 2144, 2453
FriOI	GRGCYC	1 cut(s)	451
FspBI	CTAG	3 cut(s)	351, 1455, 1887
FspI	TGCGCA	1 cut(s)	495
GlaI	GCGC	5 cut(s)	150, 429, 495, 1735, 2314
GsaI	CCCAGC	2 cut(s)	1067, 2435
GsuI	CTGGAG	2 cut(s)	375, 1414
HaeII	RGCGCY	1 cut(s)	2316
HapII	CCGG	5 cut(s)	50, 295, 635, 1271, 1878
HgaI	GACGC	2 cut(s)	125, 2400
HhaI	GCGC	5 cut(s)	151, 430, 496, 1736, 2315
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	5 cut(s)	79, 500, 1018, 1302, 1312
Hin6I	GCGC	5 cut(s)	149, 428, 494, 1734, 2313
HinP1I	GCGC	5 cut(s)	149, 428, 494, 1734, 2313
HincII	GTYRAC	3 cut(s)	2110, 2489, 2565
HindII	GTYRAC	3 cut(s)	2110, 2489, 2565
HindIII	AAGCTT	4 cut(s)	851, 1190, 1360, 1506
HpaI	GTTAAC	1 cut(s)	2110
HpaII	CCGG	5 cut(s)	50, 295, 635, 1271, 1878
HphI	GGTGA	6 cut(s)	1124, 1503, 1595, 1682, 1867, 2042
Hpy166II	GTNNAC	7 cut(s)	115, 613, 1673, 1948, 2110, 2489, 2565
Hpy188III	TCNNGA	7 cut(s)	105, 231, 619, 635, 1015, 1548, 1887
Hpy8I	GTNNAC	7 cut(s)	115, 613, 1673, 1948, 2110, 2489, 2565
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	7 cut(s)	83, 162, 247, 311, 829, 1109, 1780
HpyCH4III	ACNGT	6 cut(s)	414, 649, 679, 1406, 2074, 2095
HpyCH4IV	ACGT	3 cut(s)	615, 1495, 2021
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 530, 982, 991, 1425, 1514, 2321
HpySE526I	ACGT	3 cut(s)	615, 1495, 2021
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	5 cut(s)	79, 500, 1018, 1302, 1312
HspAI	GCGC	5 cut(s)	149, 428, 494, 1734, 2313
Kpn2I	TCCGGA	1 cut(s)	634
KspAI	GTTAAC	1 cut(s)	2110
Kzo9I	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
LguI	GCTCTTC	3 cut(s)	677, 897, 1453
LweI	GCATC	7 cut(s)	667, 1020, 1303, 1336, 1378, 2071, 2276
MaeI	CTAG	3 cut(s)	351, 1455, 1887
MaeII	ACGT	3 cut(s)	615, 1495, 2021
MaeIII	GTNAC	5 cut(s)	9, 59, 1805, 1873, 2543
MalI	GATC	5 cut(s)	870, 1259, 1563, 1578, 1605
MboI	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
MflI	RGATCY	3 cut(s)	868, 1257, 1603
MhlI	GDGCHC	3 cut(s)	451, 677, 1696
MlyI	GAGTC	2 cut(s)	512, 1460
MmeI	TCCRAC	1 cut(s)	2275
Mph1103I	ATGCAT	3 cut(s)	170, 1013, 1838
MroI	TCCGGA	1 cut(s)	634
MseI	TTAA	9 cut(s)	654, 719, 1005, 1097, 1263, 1773, 2067, 2109, 2529
MslI	CAYNNNNRTG	2 cut(s)	585, 1110
MspA1I	CMGCKG	2 cut(s)	226, 1739
MspI	CCGG	5 cut(s)	50, 295, 635, 1271, 1878
MspR9I	CCNGG	6 cut(s)	296, 456, 777, 1272, 2400, 2522
MvaI	CCWGG	4 cut(s)	456, 777, 2400, 2522
MvnI	CGCG	1 cut(s)	1734
MwoI	GCNNNNNNNGC	7 cut(s)	12, 530, 982, 991, 1425, 1514, 2321
NciI	CCSGG	2 cut(s)	296, 1272
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
NlaIII	CATG	5 cut(s)	79, 500, 1018, 1302, 1312
NlaIV	GGNNCC	4 cut(s)	299, 870, 1860, 2464
NmuCI	GTSAC	3 cut(s)	9, 59, 1873
NsbI	TGCGCA	1 cut(s)	495
NsiI	ATGCAT	3 cut(s)	170, 1013, 1838
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	1 cut(s)	1014
PaqCI	CACCTGC	1 cut(s)	1522
PciSI	GCTCTTC	3 cut(s)	677, 897, 1453
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	1613
PfoI	TCCNGGA	2 cut(s)	294, 2398
PleI	GAGTC	2 cut(s)	511, 1460
PmaCI	CACGTG	1 cut(s)	1496
PmlI	CACGTG	1 cut(s)	1496
PpsI	GAGTC	2 cut(s)	511, 1460
Ppu21I	YACGTR	1 cut(s)	1496
PpuMI	RGGWCCY	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	4 cut(s)	454, 775, 2398, 2520
PspCI	CACGTG	1 cut(s)	1496
PspFI	CCCAGC	2 cut(s)	1063, 2431
PspGI	CCWGG	4 cut(s)	454, 775, 2398, 2520
PspN4I	GGNNCC	4 cut(s)	299, 870, 1860, 2464
PspPI	GGNCC	3 cut(s)	292, 298, 2463
PspPPI	RGGWCCY	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	2221
PsuI	RGATCY	3 cut(s)	868, 1257, 1603
PvuII	CAGCTG	2 cut(s)	226, 1739
RsaI	GTAC	2 cut(s)	789, 1743
RsaNI	GTAC	2 cut(s)	788, 1742
RseI	CAYNNNNRTG	2 cut(s)	585, 1110
SacI	GAGCTC	1 cut(s)	451
SapI	GCTCTTC	3 cut(s)	677, 897, 1453
SaqAI	TTAA	9 cut(s)	654, 719, 1005, 1097, 1263, 1773, 2067, 2109, 2529
Sau3AI	GATC	5 cut(s)	868, 1257, 1561, 1576, 1603
Sau96I	GGNCC	3 cut(s)	292, 298, 2463
SchI	GAGTC	2 cut(s)	512, 1460
ScrFI	CCNGG	6 cut(s)	296, 456, 777, 1272, 2400, 2522
SduI	GDGCHC	3 cut(s)	451, 677, 1696
SfaNI	GCATC	7 cut(s)	667, 1020, 1303, 1336, 1378, 2071, 2276
SfcI	CTRYAG	5 cut(s)	609, 1371, 2217, 2308, 2391
SinI	GGWCC	3 cut(s)	292, 298, 2463
SmiMI	CAYNNNNRTG	2 cut(s)	585, 1110
SmlI	CTYRAG	1 cut(s)	1420
SmoI	CTYRAG	1 cut(s)	1420
SsiI	CCGC	4 cut(s)	522, 739, 1186, 1732
SspI	AATATT	4 cut(s)	631, 818, 1770, 2363
SspMI	CTAG	3 cut(s)	351, 1455, 1887
SstI	GAGCTC	1 cut(s)	451
StyD4I	CCNGG	6 cut(s)	294, 454, 775, 1270, 2398, 2520
StyI	CCWWGG	2 cut(s)	75, 1986
TaaI	ACNGT	6 cut(s)	414, 649, 679, 1406, 2074, 2095
TaiI	ACGT	3 cut(s)	618, 1498, 2024
TaqI	TCGA	2 cut(s)	396, 1662
TaqII	GACCGA	1 cut(s)	1058
TatI	WGTACW	2 cut(s)	787, 1741
TauI	GCSGC	2 cut(s)	524, 742
Tru1I	TTAA	9 cut(s)	654, 719, 1005, 1097, 1263, 1773, 2067, 2109, 2529
Tru9I	TTAA	9 cut(s)	654, 719, 1005, 1097, 1263, 1773, 2067, 2109, 2529
TscAI	CASTG	5 cut(s)	376, 682, 1132, 1168, 1296
TseFI	GTSAC	3 cut(s)	9, 59, 1873
Tsp45I	GTSAC	3 cut(s)	9, 59, 1873
TspDTI	ATGAA	7 cut(s)	557, 590, 884, 1215, 1254, 2165, 2249
TspGWI	ACGGA	1 cut(s)	914
TspRI	CASTG	5 cut(s)	376, 682, 1132, 1168, 1296
Van91I	CCANNNNNTGG	1 cut(s)	1613
VpaK11BI	GGWCC	3 cut(s)	292, 298, 2463
XapI	RAATTY	4 cut(s)	274, 1409, 1555, 2516
XbaI	TCTAGA	1 cut(s)	1886
XceI	RCATGY	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	3 cut(s)	351, 1455, 1887
ZraI	GACGTC	1 cut(s)	616
Zsp2I	ATGCAT	3 cut(s)	170, 1013, 1838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.