Rmu_sc0002859.1_g000008

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002859.1
OG0005253
Physical Location & Seq
Forward (+)
57940 .. 60697
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
atggaggagttcccctctcatctatcaaatgggaagtgcatgctcacaatagaagcaaaggacaatgaaaagtccatcgaatctctagatagaggactcacagagtatggttgtccgcattatcggcgaaggtgccgcattagggctccttgttgcaatgagatttttgattgtcgccattgtcataatgaagcaaagaacaatattaatgttgaaccaaaactcagacatgacataccacggcatcaagtcgaacaggtgatatgttcactttgtggcactgagcaagaggttcaacaagtctgtgtcaactgtggtgtatgcatgggcaaatacttctgtgagacatgcaagctatttgatgatgatatatcgaagaaacagtaccattgcgatggctgtgggatatgcagaattggggggcgtgataatttctttcattgctacaaatgtggctgctgctactcaattctgctgaaaaacagtcacccttgtgtggaaggagcaatgcatcatgactgccctgtttgcttcgagttcttatttgactcaagaaatgatgttacagtgatgccatgtggacacactattcacaagcattgcttgaaagagatgagagaccatttgcaatatgcttgccctctttgctccaagtcagtttgtgatatgtccaaggtatgggagaaatatgatatggagatcgcagctacaccaatgcccgaaccatatcaaaataaacaagtttcaattctgtgcaacgactgtgggaagagctcacaagtgcagtttcacattgtggcgcagaaatgctcaaattgcaaatcttacaatactcgccaaacaagaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

283

Amino Acids

32.51

Weight (kDa)

7.14

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 38 - 112 4.2e-19 CHY zinc finger
zf-RING_2 PF13639 173 - 216 3.1e-08 Ring finger domain
zf-RING_5 PF14634 173 - 218 3.1e-07 zinc-RING finger domain
zf-C3HC4 PF00097 174 - 216 8.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 174 - 214 1e-05 RING-type zinc-finger
zinc_ribbon_6 PF14599 221 - 279 3.2e-26 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 678
AciI CCGC 2 cut(s) 116, 136
AdeI CACNNNGTG 2 cut(s) 275, 796
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 142, 496, 678
AgsI TTSAA 4 cut(s) 215, 296, 607, 747
AleI CACNNNNGTG 1 cut(s) 492
AluBI AGCT 3 cut(s) 355, 707, 774
AluI AGCT 3 cut(s) 355, 707, 774
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 2 cut(s) 338, 612
ApeKI GCWGC 3 cut(s) 456, 459, 704
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 1 cut(s) 802
AsuHPI GGTGA 2 cut(s) 271, 479
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 2 cut(s) 148, 776
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
Bbv12I GWGCWC 1 cut(s) 776
BbvI GCAGC 3 cut(s) 443, 446, 716
BccI CCATC 2 cut(s) 83, 389
BceAI ACGGC 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 338, 612
BfaI CTAG 1 cut(s) 86
BisI GCNGC 4 cut(s) 136, 457, 460, 705
BlsI GCNGC 4 cut(s) 137, 458, 461, 706
BmiI GGNNCC 2 cut(s) 134, 147
BmsI GCATC 3 cut(s) 253, 520, 561
BplI GAGNNNNNCTC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 239, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 496, 678
Bse3DI GCAATG 5 cut(s) 163, 388, 439, 513, 598
BseDI CCNNGG 2 cut(s) 239, 672
BseLI CCNNNNNNNGG 3 cut(s) 142, 496, 678
BseMI GCAATG 5 cut(s) 163, 388, 439, 513, 598
BseMII CTCAG 2 cut(s) 238, 273
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 443, 446, 716
BsgI GTGCAG 1 cut(s) 803
BshNI GGYRCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 776
BslI CCNNNNNNNGG 3 cut(s) 142, 496, 678
BsmAI GTCTC 2 cut(s) 338, 612
Bso31I GGTCTC 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 148, 776
Bsp143I GATC 1 cut(s) 699
BspACI CCGC 2 cut(s) 116, 136
BspCNI CTCAG 2 cut(s) 237, 274
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 134, 147
BspQI GCTCTTC 1 cut(s) 764
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 5 cut(s) 163, 388, 439, 513, 598
BssECI CCNNGG 2 cut(s) 239, 672
BssMI GATC 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 672
Bst4CI ACNGT 5 cut(s) 314, 384, 485, 568, 764
Bst6I CTCTTC 1 cut(s) 764
BstC8I GCNNGC 3 cut(s) 41, 353, 637
BstDEI CTNAG 2 cut(s) 224, 282
BstDSI CCRYGG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 1 cut(s) 702
BstMAI GTCTC 2 cut(s) 338, 612
BstMBI GATC 1 cut(s) 699
BstMWI GCNNNNNNNGC 4 cut(s) 124, 528, 645, 816
BstNSI RCATGY 2 cut(s) 43, 351
BstV1I GCAGC 3 cut(s) 443, 446, 716
BstXI CCANNNNNNTGG 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 279, 573
Cac8I GCNNGC 3 cut(s) 41, 353, 637
CciI TCATGA 1 cut(s) 514
CfoI GCGC 1 cut(s) 802
Csp6I GTAC 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 6 cut(s) 40, 230, 325, 348, 515, 576
CviJI RGCY 7 cut(s) 146, 355, 399, 456, 707, 774, 849
CviKI_1 RGCY 7 cut(s) 146, 355, 399, 456, 707, 774, 849
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 224, 282
DpnI GATC 1 cut(s) 701
DpnII GATC 1 cut(s) 699
DraIII CACNNNGTG 2 cut(s) 275, 796
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
Ecl136II GAGCTC 1 cut(s) 774
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 2 cut(s) 148, 776
Eco31I GGTCTC 1 cut(s) 612
Eco53kI GAGCTC 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 774
EcoT14I CCWWGG 1 cut(s) 672
EcoT22I ATGCAT 2 cut(s) 326, 513
EcoT38I GRGCYC 2 cut(s) 148, 776
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 6 cut(s) 43, 233, 328, 351, 518, 579
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FatI CATG 6 cut(s) 39, 229, 324, 347, 514, 575
Fnu4HI GCNGC 4 cut(s) 136, 457, 460, 705
FriOI GRGCYC 2 cut(s) 148, 776
Fsp4HI GCNGC 4 cut(s) 136, 457, 460, 705
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 801
GluI GCNGC 4 cut(s) 136, 457, 460, 705
HhaI GCGC 1 cut(s) 802
Hin1II CATG 6 cut(s) 43, 233, 328, 351, 518, 579
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 80, 96, 548
HphI GGTGA 2 cut(s) 271, 479
Hpy166II GTNNAC 3 cut(s) 269, 310, 581
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 3 cut(s) 86, 515, 552
Hpy8I GTNNAC 3 cut(s) 269, 310, 581
HpyAV CCTTC 2 cut(s) 123, 494
HpyCH4III ACNGT 5 cut(s) 314, 384, 485, 568, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 528, 645, 816
HpyF3I CTNAG 2 cut(s) 224, 282
Hsp92II CATG 6 cut(s) 43, 233, 328, 351, 518, 579
HspAI GCGC 1 cut(s) 800
Kzo9I GATC 1 cut(s) 699
LguI GCTCTTC 1 cut(s) 764
LmnI GCTCC 3 cut(s) 151, 503, 653
LpnPI CCDG 2 cut(s) 242, 537
Lsp1109I GCAGC 3 cut(s) 443, 446, 716
LweI GCATC 3 cut(s) 253, 520, 561
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 485, 562
MalI GATC 1 cut(s) 701
MboI GATC 1 cut(s) 699
MboII GAAGA 2 cut(s) 388, 781
MhlI GDGCHC 2 cut(s) 148, 776
MluCI AATT 5 cut(s) 414, 430, 468, 747, 814
MlyI GAGTC 2 cut(s) 90, 542
MnlI CCTC 5 cut(s) 25, 86, 283, 651, 839
Mph1103I ATGCAT 2 cut(s) 326, 513
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 2 cut(s) 393, 492
MwoI GCNNNNNNNGC 4 cut(s) 124, 528, 645, 816
NdeII GATC 1 cut(s) 699
NlaIII CATG 6 cut(s) 43, 233, 328, 351, 518, 579
NlaIV GGNNCC 2 cut(s) 134, 147
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 2 cut(s) 326, 513
NspI RCATGY 2 cut(s) 43, 351
OliI CACNNNNGTG 1 cut(s) 492
PaeI GCATGC 1 cut(s) 43
PagI TCATGA 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 764
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 678
PkrI GCNGC 4 cut(s) 137, 458, 461, 706
PleI GAGTC 2 cut(s) 90, 542
PpsI GAGTC 2 cut(s) 90, 542
PshBI ATTAAT 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 776
PspN4I GGNNCC 2 cut(s) 134, 147
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 2 cut(s) 393, 492
SacI GAGCTC 1 cut(s) 776
SapI GCTCTTC 1 cut(s) 764
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 4 cut(s) 136, 457, 460, 705
Sau3AI GATC 1 cut(s) 699
SchI GAGTC 2 cut(s) 90, 542
SduI GDGCHC 2 cut(s) 148, 776
SetI ASST 7 cut(s) 134, 261, 294, 357, 678, 709, 776
SfaNI GCATC 3 cut(s) 253, 520, 561
SmiMI CAYNNNNRTG 2 cut(s) 393, 492
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
SphI GCATGC 1 cut(s) 43
Sse9I AATT 5 cut(s) 414, 430, 468, 747, 814
SsiI CCGC 2 cut(s) 116, 136
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 776
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 5 cut(s) 314, 384, 485, 568, 764
TaqI TCGA 4 cut(s) 78, 252, 374, 534
TasI AATT 5 cut(s) 414, 430, 468, 747, 814
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 286, 573
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 456, 459, 704
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 81, 204, 428
TspRI CASTG 2 cut(s) 286, 573
Van91I CCANNNNNTGG 1 cut(s) 678
VspI ATTAAT 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 85
XceI RCATGY 2 cut(s) 43, 351
XspI CTAG 1 cut(s) 86
Zsp2I ATGCAT 2 cut(s) 326, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.