Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002869.1

Orthogroup ID

OG0011364

Physical Location & Seq

Genomic Coordinates Reverse (-)

65319 .. 68518

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggacgacatcaaggcagtcctcgaccgcaaggaccactgcctcaacgtcaacatctccgatctccacttcttcggcgacctcggcaataggttggatctatatttaccgacaaatactgatgggaaaaagccagttgtggtgtttgtaactggtggagcgtggattattgggatgttgagtctgtatgacatccgtgaagaggatattgatggtgtcattgatcaatctcagctttcaacagtaacacaatcttcactccagatgcagctaccaattctagaattgctaaaagactttatgagtggaaaatctgttttccggaacatcatgggcatccttctgccaggtgtcaataccattataactgaacgaacaaatcaagtgtacgggaaactcttagagaaggctgtgcaaccctcattggagattataatccttgtcttggagaaggatttgcttctttctgatttctggcgtcctctttaccaggtagatatcttgcatattcatagctattttaacctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

176

Amino Acids

19.99

Weight (kDa)

4.84

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15860
rosa_laevigata	RLG00000012611
rosa_multiflora	Rmu_sc0002869.1_g000014 Rmu_sc0008270.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034560 Rroxscaffold_2G00077890 Rroxscaffold_4G00290430
rosa_samantha	Rh2BG364500 Rh4CG080100 Rh5AG134100 Rh5CG023500 Rh5CG128100 Rh5DG508100 Rh6AG206900 Rh6AG227100 Rh7AG439500 Rh7CG459200 Rh7DG428900
rosa_wichuraiana	Rw0G003600 Rw7G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	365, 434
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	202, 445
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	346, 489
AluBI	AGCT	3 cut(s)	235, 271, 516
AluI	AGCT	3 cut(s)	235, 271, 516
AlwI	GGATC	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	116, 206
BciT130I	CCWGG	2 cut(s)	348, 491
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	281
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	348, 491
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	348, 491
BmsI	GCATC	2 cut(s)	255, 345
BpmI	CTGGAG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 445
Bse1I	ACTGG	2 cut(s)	134, 157
Bse8I	GATNNNNATC	1 cut(s)	434
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	348, 491
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	3 cut(s)	180, 192, 336
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	2 cut(s)	202, 445
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	134, 157
BseXI	GCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	202, 445
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	61, 97, 223
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	321
BspPI	GGATC	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	134, 157
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	61, 97, 223
BssNI	GRCGYC	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	348, 491
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	231, 400
BstF5I	GGATG	3 cut(s)	180, 192, 336
BstKTI	GATC	3 cut(s)	64, 100, 226
BstMBI	GATC	3 cut(s)	61, 97, 223
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	2 cut(s)	348, 491
BstSCI	CCNGG	2 cut(s)	346, 489
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	180, 192, 336
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	1 cut(s)	467
CsiI	ACCWGGT	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	5 cut(s)	133, 235, 271, 410, 516
CviKI_1	RGCY	5 cut(s)	133, 235, 271, 410, 516
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	231, 400
DpnI	GATC	3 cut(s)	63, 99, 225
DpnII	GATC	3 cut(s)	61, 97, 223
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	346, 489
EcoRV	GATATC	1 cut(s)	499
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	103, 189, 302, 332, 365, 434, 507, 513
FatI	CATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	3 cut(s)	179, 187, 323
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	245
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	52, 388
Hpy188I	TCNGA	2 cut(s)	61, 469
Hpy188III	TCNNGA	3 cut(s)	262, 281, 322
Hpy8I	GTNNAC	2 cut(s)	52, 388
HpyAV	CCTTC	3 cut(s)	350, 400, 445
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	268, 415, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	231, 400
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	61, 97, 223
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	9 cut(s)	138, 147, 275, 333, 335, 360, 460, 476, 503
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	255, 345
MabI	ACCWGGT	1 cut(s)	489
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	148, 244
MalI	GATC	3 cut(s)	63, 99, 225
MboI	GATC	3 cut(s)	61, 97, 223
MboII	GAAGA	3 cut(s)	64, 212, 246
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	2 cut(s)	276, 284
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	32, 53, 92, 196, 430, 492
MroI	TCCGGA	1 cut(s)	321
MseI	TTAA	1 cut(s)	522
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	348, 491
MvaI	CCWGG	2 cut(s)	348, 491
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	3 cut(s)	61, 97, 223
NlaIII	CATG	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PsiI	TTATAA	2 cut(s)	365, 434
Psp6I	CCWGG	2 cut(s)	346, 489
PspGI	CCWGG	2 cut(s)	346, 489
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	61, 97, 223
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	348, 491
SetI	ASST	9 cut(s)	51, 84, 95, 237, 273, 352, 495, 518, 528
SexAI	ACCWGGT	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	255, 345
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	2 cut(s)	276, 284
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	346, 489
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	276, 284
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	280
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.