Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011364

Physical Location & Seq

Genomic Coordinates Reverse (-)

13716057 .. 13718202

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGAGAATCACTGCTCTGCGGTGGGAGTCTGCTCTCAAGGTCCGCCGTAGTATTGTTTATGGAGATCAACCAAGAAATAGTTTCATGCTGGTTTAGGTATAAAGCATGGGGTTCTCTTTTAGGTCTGCAGTTGGCTGAAAGAAACATCATAGTGGCATGTGTTGATTACAGGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTTAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGGTAGATATCTTGCATATTCATAGCTATTTTAACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

176

Amino Acids

20.12

Weight (kDa)

4.88

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15860
rosa_laevigata	RLG00000012611
rosa_multiflora	Rmu_sc0002869.1_g000014 Rmu_sc0008270.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034560 Rroxscaffold_2G00077890 Rroxscaffold_4G00290430
rosa_samantha	Rh2BG364500 Rh4CG080100 Rh5AG134100 Rh5CG023500 Rh5CG128100 Rh5DG508100 Rh6AG206900 Rh6AG227100 Rh7AG439500 Rh7CG459200 Rh7DG428900
rosa_wichuraiana	Rw0G003600 Rw7G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	365, 434
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	2 cut(s)	21, 45
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	346, 489
AluBI	AGCT	3 cut(s)	235, 271, 516
AluI	AGCT	3 cut(s)	235, 271, 516
Aor13HI	TCCGGA	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	348, 491
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	348, 491
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	348, 491
BmsI	GCATC	2 cut(s)	255, 345
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	478
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	434
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	348, 491
BseGI	GGATG	2 cut(s)	180, 336
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	445
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	66, 223
BspACI	CCGC	2 cut(s)	21, 45
BspCNI	CTCAG	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	132
BssMI	GATC	2 cut(s)	66, 223
BssNI	GRCGYC	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	348, 491
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	231, 400
BstF5I	GGATG	2 cut(s)	180, 336
BstKTI	GATC	2 cut(s)	69, 226
BstMBI	GATC	2 cut(s)	66, 223
BstNI	CCWGG	2 cut(s)	348, 491
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	346, 489
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	180, 336
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 202
Cfr13I	GGNCC	1 cut(s)	42
CseI	GACGC	1 cut(s)	467
CsiI	ACCWGGT	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	87, 108, 159, 331
CviJI	RGCY	5 cut(s)	137, 235, 271, 410, 516
CviKI_1	RGCY	5 cut(s)	137, 235, 271, 410, 516
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	231, 400
DpnI	GATC	2 cut(s)	68, 225
DpnII	GATC	2 cut(s)	66, 223
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	346, 489
EcoRV	GATATC	1 cut(s)	499
FaeI	CATG	4 cut(s)	90, 111, 162, 334
FatI	CATG	4 cut(s)	86, 107, 158, 330
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	187, 323
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	245
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	90, 111, 162, 334
HinfI	GANTC	3 cut(s)	8, 28, 181
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	3 cut(s)	262, 281, 322
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	3 cut(s)	350, 400, 445
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	130, 268, 415, 505
HpyF3I	CTNAG	2 cut(s)	231, 400
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	4 cut(s)	90, 111, 162, 334
Kpn2I	TCCGGA	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	66, 223
LpnPI	CCDG	9 cut(s)	76, 157, 275, 333, 335, 360, 460, 476, 503
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	255, 345
MabI	ACCWGGT	1 cut(s)	489
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	68, 225
MboI	GATC	2 cut(s)	66, 223
MboII	GAAGA	2 cut(s)	212, 246
MluCI	AATT	2 cut(s)	276, 284
MlyI	GAGTC	2 cut(s)	37, 190
MnlI	CCTC	2 cut(s)	196, 492
MroI	TCCGGA	1 cut(s)	321
MseI	TTAA	2 cut(s)	354, 522
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	348, 491
MvaI	CCWGG	2 cut(s)	348, 491
NdeII	GATC	2 cut(s)	66, 223
NlaIII	CATG	4 cut(s)	90, 111, 162, 334
NspI	RCATGY	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	2 cut(s)	36, 189
PpsI	GAGTC	2 cut(s)	36, 189
PsiI	TTATAA	2 cut(s)	365, 434
Psp6I	CCWGG	2 cut(s)	346, 489
PspGI	CCWGG	2 cut(s)	346, 489
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	354, 522
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	2 cut(s)	66, 223
Sau96I	GGNCC	1 cut(s)	42
SchI	GAGTC	2 cut(s)	37, 190
ScrFI	CCNGG	2 cut(s)	348, 491
SetI	ASST	9 cut(s)	44, 101, 127, 237, 273, 352, 495, 518, 528
SexAI	ACCWGGT	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	255, 345
SfcI	CTRYAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	2 cut(s)	276, 284
SsiI	CCGC	2 cut(s)	21, 45
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	346, 489
TaaI	ACNGT	1 cut(s)	244
TasI	AATT	2 cut(s)	276, 284
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	354, 522
Tru9I	TTAA	2 cut(s)	354, 522
TscAI	CASTG	2 cut(s)	18, 202
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	75, 500
TspRI	CASTG	2 cut(s)	18, 202
VpaK11BI	GGWCC	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	280
XceI	RCATGY	1 cut(s)	162
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.