Rh6AG227100

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011364
Physical Location & Seq
Reverse (-)
40986163 .. 40999830
13668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG227100.1

Sequence Viewer

Length: 1179 bp
ATGGCTTCTTCTTCTTGTCGCAGATCGAGGTTGCCTCCAGCTCCAAGCTCCATCCCTCATCCTCTTTTCTCAGATCAACCACGGCCTCTTCCTCTTGCCTCAGATCGAGGTTGCCTCCAGCTCCAAGCTCCATCCCTCATCCTCTTCTCTCAGATTGACCACGGCCTCTTCCGCATCCGATCAATTTCATCTCCGATTTCGGGTTCTACCAGGGAAATAATACCAGGTAGCAGTGAATTGGCAGTGGTGGGTGTCATCTTCAACTTCAGACTATCTTGGGGTGCAGAAAAACCAACCGACTTTGGCACTTTGATTGGTCCCAAAGGTCTGCCTCTGTTCGGGAAGGTTGCGCTGGAGATTGGTCTTCTCACTAAGCTTGATCATGAACTTCACAATTTCCGTCGGCCTACCCTTGCACAATCGATGGCGCCACCTCGATTGGATCTACACCTTCACCTACGTATCACCTCCGTCAACGTCATCGTCGGCCTCGTCTCACCGTGGCCATCTAGACTAGAGACTGGAGTTGAAGGCTGTGTGGTGGCCGAGATTGCATATTGCTATTACTTTTCAAGCCAGGTCCGCCGTAGTATTGTTTATGGAGATCAACCAAGAAATAGGTTGGATCTATATTTACCGACAAATACTGATGGGAAAAAGCCAGTTGTGGTGTTTGTAACTGGTGGAACGTGGATTATTGGGTATAAAGCATGGGGTTCTCTTTTAGGTCTGCAGTTGGCTGAAAGAAACATCATAGTGGCATGTGTTGATTACAGGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTCAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGAAATCAGCATGGCTAGCAATATTTTATGTGTATACCGACTGGAGTTGCTATAGGCTATGTTTCCAGCGGATTTATGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

392

Amino Acids

43.94

Weight (kDa)

8.6

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 208 - 261 4.4e-07 BD-FAE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 968, 1037
AccB1I GGYRCC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 1127
AccIII TCCGGA 1 cut(s) 924
AciI CCGC 3 cut(s) 172, 583, 1162
AclWI GGATC 2 cut(s) 450, 633
AcoI YGGCCR 2 cut(s) 503, 543
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 428, 1081
AfaI GTAC 1 cut(s) 992
AfiI CCNNNNNNNGG 3 cut(s) 200, 338, 1048
AgsI TTSAA 4 cut(s) 262, 530, 573, 843
AjnI CCWGG 4 cut(s) 209, 223, 576, 949
AluBI AGCT 7 cut(s) 41, 48, 121, 128, 376, 838, 874
AluI AGCT 7 cut(s) 41, 48, 121, 128, 376, 838, 874
Alw26I GTCTC 2 cut(s) 499, 512
AlwI GGATC 2 cut(s) 450, 633
Aor13HI TCCGGA 1 cut(s) 924
AoxI GGCC 6 cut(s) 83, 163, 404, 487, 503, 543
ApeKI GCWGC 1 cut(s) 871
AspLEI GCGC 2 cut(s) 352, 430
AspS9I GGNCC 2 cut(s) 317, 580
AsuHPI GGTGA 3 cut(s) 446, 457, 489
AsuNHI GCTAGC 1 cut(s) 1108
AvaII GGWCC 2 cut(s) 317, 580
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BalI TGGCCA 1 cut(s) 505
BanI GGYRCC 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 883
BccI CCATC 6 cut(s) 59, 139, 418, 514, 644, 809
BceAI ACGGC 3 cut(s) 98, 178, 570
BciT130I CCWGG 4 cut(s) 211, 225, 578, 951
BclI TGATCA 2 cut(s) 379, 826
BcoDI GTCTC 2 cut(s) 499, 512
BfaI CTAG 4 cut(s) 510, 515, 884, 1109
BfmI CTRYAG 2 cut(s) 731, 1144
BfoI RGCGCY 1 cut(s) 431
BisI GCNGC 1 cut(s) 872
BlsI GCNGC 1 cut(s) 873
Bme1390I CCNGG 4 cut(s) 211, 225, 578, 951
Bme18I GGWCC 2 cut(s) 317, 580
BmgT120I GGNCC 2 cut(s) 317, 580
BmiI GGNNCC 2 cut(s) 319, 429
BmrFI CCNGG 4 cut(s) 211, 225, 578, 951
BmsI GCATC 3 cut(s) 183, 858, 948
BmtI GCTAGC 1 cut(s) 1112
BpiI GAAGAC 1 cut(s) 356
BplI GAGNNNNNCTC 4 cut(s) 19, 51, 99, 131
BpmI CTGGAG 6 cut(s) 21, 101, 374, 543, 848, 1156
Bsa29I ATCGAT 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 461
BsaBI GATNNNNATC 1 cut(s) 1037
BsaHI GRCGYC 2 cut(s) 428, 1081
BsaJI CCNNGG 4 cut(s) 80, 160, 210, 500
BsaWI WCCGGW 1 cut(s) 924
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 338, 1048
Bse1I ACTGG 4 cut(s) 526, 662, 685, 1139
Bse8I GATNNNNATC 1 cut(s) 1037
BseAI TCCGGA 1 cut(s) 924
BseBI CCWGG 4 cut(s) 211, 225, 578, 951
BseCI ATCGAT 1 cut(s) 422
BseDI CCNNGG 4 cut(s) 80, 160, 210, 500
BseGI GGATG 7 cut(s) 51, 58, 131, 138, 174, 783, 939
BseJI GATNNNNATC 1 cut(s) 1037
BseLI CCNNNNNNNGG 3 cut(s) 200, 338, 1048
BseMII CTCAG 4 cut(s) 84, 114, 164, 848
BseNI ACTGG 4 cut(s) 526, 662, 685, 1139
BseXI GCAGC 1 cut(s) 883
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 6 cut(s) 85, 165, 406, 489, 505, 545
BshNI GGYRCC 1 cut(s) 427
BshVI ATCGAT 1 cut(s) 422
BsiSI CCGG 1 cut(s) 925
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 200, 338, 1048
BsmAI GTCTC 2 cut(s) 499, 512
BsmBI CGTCTC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 6 cut(s) 85, 165, 406, 489, 505, 545
Bsp13I TCCGGA 1 cut(s) 924
Bsp143I GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
BspACI CCGC 3 cut(s) 172, 583, 1162
BspANI GGCC 6 cut(s) 85, 165, 406, 489, 505, 545
BspCNI CTCAG 4 cut(s) 83, 113, 163, 847
BspDI ATCGAT 1 cut(s) 422
BspEI TCCGGA 1 cut(s) 924
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 319, 429
BspMAI CTGCAG 1 cut(s) 735
BspOI GCTAGC 1 cut(s) 1112
BspPI GGATC 2 cut(s) 450, 633
BspT107I GGYRCC 1 cut(s) 427
BsrI ACTGG 4 cut(s) 526, 662, 685, 1139
BssECI CCNNGG 4 cut(s) 80, 160, 210, 500
BssMI GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
BssNAI GTATAC 1 cut(s) 1128
BssNI GRCGYC 2 cut(s) 428, 1081
Bst1107I GTATAC 1 cut(s) 1128
Bst2UI CCWGG 4 cut(s) 211, 225, 578, 951
Bst4CI ACNGT 2 cut(s) 501, 847
Bst6I CTCTTC 4 cut(s) 93, 149, 173, 798
BstACI GRCGYC 2 cut(s) 428, 1081
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 6 cut(s) 70, 100, 150, 372, 834, 1003
BstDSI CCRYGG 3 cut(s) 80, 160, 500
BstF5I GGATG 7 cut(s) 51, 58, 131, 138, 174, 783, 939
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 352, 430
BstKTI GATC 9 cut(s) 26, 76, 106, 182, 382, 445, 607, 628, 829
BstMAI GTCTC 2 cut(s) 499, 512
BstMBI GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
BstMWI GCNNNNNNNGC 4 cut(s) 171, 551, 582, 1109
BstNI CCWGG 4 cut(s) 211, 225, 578, 951
BstNSI RCATGY 1 cut(s) 765
BstSCI CCNGG 4 cut(s) 209, 223, 576, 949
BstSFI CTRYAG 2 cut(s) 731, 1144
BstSNI TACGTA 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 883
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 2 cut(s) 442, 625
BstYI RGATCY 2 cut(s) 442, 625
BstZ17I GTATAC 1 cut(s) 1128
Bsu15I ATCGAT 1 cut(s) 422
BsuRI GGCC 6 cut(s) 85, 165, 406, 489, 505, 545
BsuTUI ATCGAT 1 cut(s) 422
BtgI CCRYGG 3 cut(s) 80, 160, 500
BtsCI GGATG 7 cut(s) 51, 58, 131, 138, 174, 783, 939
BtsI GCAGTG 2 cut(s) 238, 249
BtsIMutI CAGTG 3 cut(s) 238, 249, 805
Cac8I GCNNGC 1 cut(s) 1110
CciI TCATGA 1 cut(s) 382
CfoI GCGC 2 cut(s) 352, 430
Cfr13I GGNCC 2 cut(s) 317, 580
ClaI ATCGAT 1 cut(s) 422
CseI GACGC 1 cut(s) 1070
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 1 cut(s) 991
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 5 cut(s) 383, 711, 762, 934, 1104
CviQI GTAC 1 cut(s) 991
DdeI CTNAG 6 cut(s) 70, 100, 150, 372, 834, 1003
DinI GGCGCC 1 cut(s) 429
DpnI GATC 9 cut(s) 25, 75, 105, 181, 381, 444, 606, 627, 828
DpnII GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
EaeI YGGCCR 2 cut(s) 503, 543
Eam1104I CTCTTC 4 cut(s) 93, 149, 173, 798
EarI CTCTTC 4 cut(s) 93, 149, 173, 798
EciI GGCGGA 1 cut(s) 572
Eco105I TACGTA 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 317, 580
Eco57I CTGAAG 1 cut(s) 250
EcoRII CCWGG 4 cut(s) 209, 223, 576, 949
EgeI GGCGCC 1 cut(s) 429
EheI GGCGCC 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 5 cut(s) 386, 714, 765, 937, 1107
FaqI GGGAC 1 cut(s) 303
FatI CATG 5 cut(s) 382, 710, 761, 933, 1103
FbaI TGATCA 2 cut(s) 379, 826
FblI GTMKAC 1 cut(s) 1127
Fnu4HI GCNGC 1 cut(s) 872
FokI GGATG 7 cut(s) 38, 45, 118, 125, 161, 790, 926
Fsp4HI GCNGC 1 cut(s) 872
FspBI CTAG 4 cut(s) 510, 515, 884, 1109
GlaI GCGC 2 cut(s) 351, 429
GluI GCNGC 1 cut(s) 872
GsuI CTGGAG 6 cut(s) 21, 101, 374, 543, 848, 1156
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 6 cut(s) 85, 165, 406, 489, 505, 545
HapII CCGG 1 cut(s) 925
HgaI GACGC 1 cut(s) 1070
HhaI GCGC 2 cut(s) 352, 430
Hin1I GRCGYC 2 cut(s) 428, 1081
Hin1II CATG 5 cut(s) 386, 714, 765, 937, 1107
Hin6I GCGC 2 cut(s) 350, 428
HinP1I GCGC 2 cut(s) 350, 428
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 784
HpaII CCGG 1 cut(s) 925
HphI GGTGA 3 cut(s) 446, 457, 489
Hpy166II GTNNAC 3 cut(s) 475, 991, 1128
Hpy188I TCNGA 7 cut(s) 73, 103, 153, 179, 195, 269, 1072
Hpy188III TCNNGA 6 cut(s) 340, 383, 510, 865, 884, 925
Hpy8I GTNNAC 3 cut(s) 475, 991, 1128
Hpy99I CGWCG 2 cut(s) 405, 488
HpyAV CCTTC 6 cut(s) 337, 461, 524, 953, 1003, 1048
HpyCH4III ACNGT 2 cut(s) 501, 847
HpyCH4IV ACGT 3 cut(s) 460, 477, 689
HpyCH4V TGCA 6 cut(s) 284, 416, 554, 733, 871, 1018
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 551, 582, 1109
HpyF3I CTNAG 6 cut(s) 70, 100, 150, 372, 834, 1003
HpySE526I ACGT 3 cut(s) 460, 477, 689
Hsp92I GRCGYC 2 cut(s) 428, 1081
Hsp92II CATG 5 cut(s) 386, 714, 765, 937, 1107
HspAI GCGC 2 cut(s) 350, 428
KasI GGCGCC 1 cut(s) 427
Kpn2I TCCGGA 1 cut(s) 924
Ksp22I TGATCA 2 cut(s) 379, 826
Kzo9I GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
LmnI GCTCC 4 cut(s) 46, 53, 126, 133
Lsp1109I GCAGC 1 cut(s) 883
LweI GCATC 3 cut(s) 183, 858, 948
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 4 cut(s) 510, 515, 884, 1109
MaeII ACGT 3 cut(s) 460, 477, 689
MaeIII GTNAC 2 cut(s) 676, 847
MalI GATC 9 cut(s) 25, 75, 105, 181, 381, 444, 606, 627, 828
MboI GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
MboII GAAGA 8 cut(s) 3, 80, 136, 160, 250, 356, 815, 849
MflI RGATCY 2 cut(s) 442, 625
MlsI TGGCCA 1 cut(s) 505
MluCI AATT 6 cut(s) 183, 236, 394, 879, 887, 1174
MluNI TGGCCA 1 cut(s) 505
Mly113I GGCGCC 1 cut(s) 428
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 1 cut(s) 603
Mox20I TGGCCA 1 cut(s) 505
MroI TCCGGA 1 cut(s) 924
MscI TGGCCA 1 cut(s) 505
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 505
MspA1I CMGCKG 1 cut(s) 1162
MspI CCGG 1 cut(s) 925
MspR9I CCNGG 4 cut(s) 211, 225, 578, 951
MvaI CCWGG 4 cut(s) 211, 225, 578, 951
MwoI GCNNNNNNNGC 4 cut(s) 171, 551, 582, 1109
NarI GGCGCC 1 cut(s) 428
NdeII GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
NheI GCTAGC 1 cut(s) 1108
NlaIII CATG 5 cut(s) 386, 714, 765, 937, 1107
NlaIV GGNNCC 2 cut(s) 319, 429
NmeAIII GCCGAG 1 cut(s) 571
NspI RCATGY 1 cut(s) 765
PagI TCATGA 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PkrI GCNGC 1 cut(s) 873
PleI GAGTC 1 cut(s) 792
PluTI GGCGCC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 792
Ppu21I YACGTR 1 cut(s) 461
PsiI TTATAA 2 cut(s) 968, 1037
Psp6I CCWGG 4 cut(s) 209, 223, 576, 949
PspGI CCWGG 4 cut(s) 209, 223, 576, 949
PspN4I GGNNCC 2 cut(s) 319, 429
PspPI GGNCC 2 cut(s) 317, 580
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 442, 625
RsaI GTAC 1 cut(s) 992
RsaNI GTAC 1 cut(s) 991
RseI CAYNNNNRTG 1 cut(s) 755
SatI GCNGC 1 cut(s) 872
Sau3AI GATC 9 cut(s) 23, 73, 103, 179, 379, 442, 604, 625, 826
Sau96I GGNCC 2 cut(s) 317, 580
SchI GAGTC 1 cut(s) 793
ScrFI CCNGG 4 cut(s) 211, 225, 578, 951
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 3 cut(s) 183, 858, 948
SfcI CTRYAG 2 cut(s) 731, 1144
SfoI GGCGCC 1 cut(s) 429
SinI GGWCC 2 cut(s) 317, 580
SmiMI CAYNNNNRTG 1 cut(s) 755
SnaBI TACGTA 1 cut(s) 461
Sse9I AATT 6 cut(s) 183, 236, 394, 879, 887, 1174
SsiI CCGC 3 cut(s) 172, 583, 1162
SspDI GGCGCC 1 cut(s) 427
SspI AATATT 1 cut(s) 1116
SspMI CTAG 4 cut(s) 510, 515, 884, 1109
StyD4I CCNGG 4 cut(s) 209, 223, 576, 949
TaaI ACNGT 2 cut(s) 501, 847
TaiI ACGT 3 cut(s) 463, 480, 692
TaqI TCGA 4 cut(s) 26, 106, 422, 436
TasI AATT 6 cut(s) 183, 236, 394, 879, 887, 1174
TscAI CASTG 3 cut(s) 238, 249, 805
TseI GCWGC 1 cut(s) 871
TspDTI ATGAA 2 cut(s) 177, 399
TspGWI ACGGA 2 cut(s) 389, 460
TspRI CASTG 3 cut(s) 238, 249, 805
VpaK11BI GGWCC 2 cut(s) 317, 580
XbaI TCTAGA 2 cut(s) 509, 883
XceI RCATGY 1 cut(s) 765
XmiI GTMKAC 1 cut(s) 1127
XspI CTAG 4 cut(s) 510, 515, 884, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.