Rh6AG206900

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011364
Physical Location & Seq
Reverse (-)
36940083 .. 36957239
17157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG206900.1

Sequence Viewer

Length: 915 bp
ATGATGGAAGAGAAAAGTGCCGGCAGAGCTGGAATCGTTGATCGAGCTGGAATCGCGTTGATCTCTGGCGAAAGAGATCCGTTATCTCCGGCGTTCGCCTCAATTCCACTGCTGCCCGCTGCAAATCAGTCATCTTCGGCGAGATTCGGCGCTCGAGCTCGACCTCCGGTGCTCAATCCAGGCTCTCCGGCTCTCGTCACAGGCCGGTGGCAGAGGAGAACGTTGATCTGGTGCGCCGGAGGCGGAGTTGCATATTGCTATTACTTTTCAAGCCAGGTCCGCCGTAGTATTGTTTATGGAGATCAACCAAGAAATAGGTTGGATCTATATTTACCGACAAATACTGATGGGAAAATGCCAGTTGTGGTGTTTGTAACTGGTGAAGCGTGGATTATTGGGTATAAAGCATGGGGTTCTCTTTTAGGTCTGCAGTTGGCTGAAAGAAACATCATAGTGGCATGTGTTGATTACAGGATGTTGAGTCTGTATGACATCAATGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTCAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGAAATCAGCATGGCTAGCAATATTTTATATGTGTATACCGACTGGAGTTGCTATAGGCTATGTTTCCAGCGGATTTCCTCTTTCATGGATTTCTGACAATGCTCCACAGTTGAGCATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

304

Amino Acids

33.57

Weight (kDa)

7.57

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 107 - 160 3.7e-07 BD-FAE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 665, 734
AccI GTMKAC 1 cut(s) 826
AccII CGCG 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 621
AciI CCGC 4 cut(s) 117, 243, 280, 861
AclI AACGTT 1 cut(s) 221
AclWI GGATC 2 cut(s) 71, 330
AcyI GRCGYC 1 cut(s) 778
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 1 cut(s) 745
AgsI TTSAA 2 cut(s) 270, 540
AjnI CCWGG 3 cut(s) 178, 273, 646
AluBI AGCT 5 cut(s) 29, 47, 158, 535, 571
AluI AGCT 5 cut(s) 29, 47, 158, 535, 571
Alw21I GWGCWC 2 cut(s) 160, 174
AlwI GGATC 2 cut(s) 71, 330
Ama87I CYCGRG 1 cut(s) 153
Aor13HI TCCGGA 1 cut(s) 621
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 112, 119, 568
AspLEI GCGC 2 cut(s) 152, 236
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 392
AsuNHI GCTAGC 1 cut(s) 805
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 160, 174
BbvI GCAGC 3 cut(s) 99, 106, 580
BccI CCATC 2 cut(s) 341, 506
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 3 cut(s) 180, 275, 648
BclI TGATCA 1 cut(s) 523
BfaI CTAG 2 cut(s) 581, 806
BfmI CTRYAG 2 cut(s) 428, 843
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 3 cut(s) 113, 120, 569
BlsI GCNGC 3 cut(s) 114, 121, 570
Bme1390I CCNGG 3 cut(s) 180, 275, 648
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 3 cut(s) 180, 275, 648
BmsI GCATC 2 cut(s) 555, 645
BmtI GCTAGC 1 cut(s) 809
BpmI CTGGAG 2 cut(s) 545, 855
BsaBI GATNNNNATC 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 778
BsaWI WCCGGW 2 cut(s) 166, 621
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse118I RCCGGY 2 cut(s) 20, 204
Bse1I ACTGG 3 cut(s) 359, 382, 838
Bse8I GATNNNNATC 1 cut(s) 734
BseAI TCCGGA 1 cut(s) 621
BseBI CCWGG 3 cut(s) 180, 275, 648
BseGI GGATG 2 cut(s) 480, 636
BseJI GATNNNNATC 1 cut(s) 734
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 3 cut(s) 359, 382, 838
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 3 cut(s) 99, 106, 580
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 204
BsiHKAI GWGCWC 2 cut(s) 160, 174
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 7 cut(s) 21, 89, 167, 188, 205, 237, 622
BslI CCNNNNNNNGG 1 cut(s) 745
BsmI GAATGC 1 cut(s) 906
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 160, 174
Bsp13I TCCGGA 1 cut(s) 621
Bsp143I GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
BspACI CCGC 4 cut(s) 117, 243, 280, 861
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 544
BspEI TCCGGA 1 cut(s) 621
BspFNI CGCG 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 432
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 2 cut(s) 71, 330
BsrFI RCCGGY 2 cut(s) 20, 204
BsrI ACTGG 3 cut(s) 359, 382, 838
BssAI RCCGGY 2 cut(s) 20, 204
BssMI GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
BssNAI GTATAC 1 cut(s) 827
BssNI GRCGYC 1 cut(s) 778
Bst1107I GTATAC 1 cut(s) 827
Bst2UI CCWGG 3 cut(s) 180, 275, 648
Bst4CI ACNGT 2 cut(s) 544, 900
Bst6I CTCTTC 2 cut(s) 3, 495
BstACI GRCGYC 1 cut(s) 778
BstC8I GCNNGC 3 cut(s) 22, 117, 807
BstDEI CTNAG 2 cut(s) 531, 700
BstF5I GGATG 2 cut(s) 480, 636
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 236
BstKTI GATC 7 cut(s) 43, 63, 79, 228, 304, 325, 526
BstMBI GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
BstMWI GCNNNNNNNGC 5 cut(s) 26, 53, 240, 279, 806
BstNI CCWGG 3 cut(s) 180, 275, 648
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 3 cut(s) 178, 273, 646
BstSFI CTRYAG 2 cut(s) 428, 843
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 3 cut(s) 99, 106, 580
BstX2I RGATCY 2 cut(s) 76, 322
BstYI RGATCY 2 cut(s) 76, 322
BstZ17I GTATAC 1 cut(s) 827
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 2 cut(s) 480, 636
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 3 cut(s) 22, 117, 807
CfoI GCGC 2 cut(s) 152, 236
Cfr10I RCCGGY 2 cut(s) 20, 204
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 767
Csp6I GTAC 1 cut(s) 688
CviAII CATG 5 cut(s) 408, 459, 631, 801, 876
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 2 cut(s) 531, 700
DpnI GATC 7 cut(s) 42, 62, 78, 227, 303, 324, 525
DpnII GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
Eam1104I CTCTTC 2 cut(s) 3, 495
EarI CTCTTC 2 cut(s) 3, 495
EciI GGCGGA 2 cut(s) 258, 269
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 178, 273, 646
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 5 cut(s) 411, 462, 634, 804, 879
FatI CATG 5 cut(s) 407, 458, 630, 800, 875
FauI CCCGC 1 cut(s) 124
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 3 cut(s) 113, 120, 569
FokI GGATG 2 cut(s) 487, 623
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 113, 120, 569
FspBI CTAG 2 cut(s) 581, 806
GlaI GCGC 2 cut(s) 151, 235
GluI GCNGC 3 cut(s) 113, 120, 569
GsuI CTGGAG 2 cut(s) 545, 855
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 204
HapII CCGG 7 cut(s) 21, 89, 167, 188, 205, 237, 622
HgaI GACGC 1 cut(s) 767
HhaI GCGC 2 cut(s) 152, 236
Hin1I GRCGYC 1 cut(s) 778
Hin1II CATG 5 cut(s) 411, 462, 634, 804, 879
Hin6I GCGC 2 cut(s) 150, 234
HinP1I GCGC 2 cut(s) 150, 234
HinfI GANTC 4 cut(s) 33, 51, 144, 481
HpaII CCGG 7 cut(s) 21, 89, 167, 188, 205, 237, 622
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 688, 827
Hpy188I TCNGA 2 cut(s) 769, 886
Hpy188III TCNNGA 3 cut(s) 562, 581, 622
Hpy8I GTNNAC 2 cut(s) 688, 827
HpyAV CCTTC 3 cut(s) 650, 700, 745
HpyCH4III ACNGT 2 cut(s) 544, 900
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 5 cut(s) 122, 251, 430, 568, 715
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 53, 240, 279, 806
HpyF3I CTNAG 2 cut(s) 531, 700
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 778
Hsp92II CATG 5 cut(s) 411, 462, 634, 804, 879
HspAI GCGC 2 cut(s) 150, 234
Kpn2I TCCGGA 1 cut(s) 621
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
LmnI GCTCC 1 cut(s) 898
Lsp1109I GCAGC 3 cut(s) 99, 106, 580
LweI GCATC 2 cut(s) 555, 645
MaeI CTAG 2 cut(s) 581, 806
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 196, 373, 544
MalI GATC 7 cut(s) 42, 62, 78, 227, 303, 324, 525
MboI GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
MboII GAAGA 4 cut(s) 20, 126, 512, 546
MflI RGATCY 2 cut(s) 76, 322
MhlI GDGCHC 2 cut(s) 160, 174
MluCI AATT 3 cut(s) 102, 576, 584
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 7 cut(s) 109, 174, 207, 233, 496, 792, 879
MroI TCCGGA 1 cut(s) 621
MroNI GCCGGC 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 2 cut(s) 119, 861
MspI CCGG 7 cut(s) 21, 89, 167, 188, 205, 237, 622
MspR9I CCNGG 3 cut(s) 180, 275, 648
Mva1269I GAATGC 1 cut(s) 906
MvaI CCWGG 3 cut(s) 180, 275, 648
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 5 cut(s) 26, 53, 240, 279, 806
NaeI GCCGGC 1 cut(s) 22
NdeII GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
NgoMIV GCCGGC 1 cut(s) 20
NheI GCTAGC 1 cut(s) 805
NlaIII CATG 5 cut(s) 411, 462, 634, 804, 879
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 462
PaeR7I CTCGAG 1 cut(s) 153
PctI GAATGC 1 cut(s) 906
PdiI GCCGGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 33, 51, 144
PkrI GCNGC 3 cut(s) 114, 121, 570
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PsiI TTATAA 2 cut(s) 665, 734
Psp124BI GAGCTC 1 cut(s) 160
Psp1406I AACGTT 1 cut(s) 221
Psp6I CCWGG 3 cut(s) 178, 273, 646
PspGI CCWGG 3 cut(s) 178, 273, 646
PspPI GGNCC 1 cut(s) 277
PspXI VCTCGAGB 1 cut(s) 153
PstI CTGCAG 1 cut(s) 432
PsuI RGATCY 2 cut(s) 76, 322
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 1 cut(s) 452
SacI GAGCTC 1 cut(s) 160
SatI GCNGC 3 cut(s) 113, 120, 569
Sau3AI GATC 7 cut(s) 40, 60, 76, 225, 301, 322, 523
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 3 cut(s) 180, 275, 648
SduI GDGCHC 2 cut(s) 160, 174
SfaNI GCATC 2 cut(s) 555, 645
SfcI CTRYAG 2 cut(s) 428, 843
Sfr274I CTCGAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 3 cut(s) 102, 576, 584
SsiI CCGC 4 cut(s) 117, 243, 280, 861
SspI AATATT 1 cut(s) 813
SspMI CTAG 2 cut(s) 581, 806
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 3 cut(s) 178, 273, 646
TaaI ACNGT 2 cut(s) 544, 900
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 43, 154, 160
TasI AATT 3 cut(s) 102, 576, 584
TfiI GAWTC 3 cut(s) 33, 51, 144
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 112, 119, 568
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 513, 864
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 277
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 1 cut(s) 462
XhoI CTCGAG 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 826
XspI CTAG 2 cut(s) 581, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.