Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011364

Physical Location & Seq

Genomic Coordinates Forward (+)

59242267 .. 59269867

Gene Structure 27601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG439500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCGGAGGGCTAGTGTTCCTGCTTCAATGGAAATGACTGTACCTGAACTTTGTCAAGCACATCATGGTGATGAAGCCACTGTTCCACTAAAGGAGAAGTTACTTGAATCTCGTATTGAGCTTCGCCCTCTTCTGATCACCTCCCACAGCAGACTAAAAGATATACTGTTCCTTGATCTTGCTTTGGCTTCAGCTGTCAAAACAACATGGAAAGGGGACTCACAGATCTACATATTTCTAACCCACCGTTGGCAGGTTATCAGCCCAGTTGAAGTGCAGGGTATTATAGCTTCGGTTAATGAGCTAACCAGTATTCAGAATAAAGTCTATAAAAAGCCAACCATTCTAATTGCAACTAGAGTAACTGGGGAAGAGGAGATTCCAGATGGAGTAGTTGCTGTCCTGACACCTGATAAGCCAGATGTTCTATCTCATGTCTCTATAAGAGCAAGAAATAGCAAGACCCATCAACTTAAGAGCATAATGAAGAGTTCAAGAATACCTTGGCCTGGTGATGAAGGTGACGAGAGGTGGAATCAAGCTTGGTGTGCAATAAAGAAGGGACGGACTGCAAGTGGAGATGGTGGCATTTCTGTCCCTAATATTTCAAAGTCGTTTGCATATGTCAGAAAGAGTGATCAAGTCTTTTTCCAAGTGCCTCAAATTATTGGTTGCAATTTAGAGGCTTTCACTGAATGGCCTGCAAGTGGAGATGGTGGCATTTGTCTGCCTGCAGATTATTTTCCAGGGGTGTTCGGACATGTTAGAGAAACTGACCAACTCTTGAATCCGCTCGGTATCACCACCGCCGACGGTGGCGATGATGACGTGGAAGAAGTTAGAGACGGTGGTGCGGCCAATGAAGTGGACACCGACGAGGCCGGAATGGACGGTATGGCTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

302

Amino Acids

33.06

Weight (kDa)

5.15

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWD1_pHisD	PF22973	84 - 155	6.3e-35	Alpha-glucan water dikinase, phosphohistidine-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15860
rosa_laevigata	RLG00000012611
rosa_multiflora	Rmu_sc0002869.1_g000014 Rmu_sc0008270.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034560 Rroxscaffold_2G00077890 Rroxscaffold_4G00290430
rosa_samantha	Rh2BG364500 Rh4CG080100 Rh5AG134100 Rh5CG023500 Rh5CG128100 Rh5DG508100 Rh6AG206900 Rh6AG227100 Rh7AG439500 Rh7CG459200 Rh7DG428900
rosa_wichuraiana	Rw0G003600 Rw7G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccBSI	CCGCTC	1 cut(s)	793
AciI	CCGC	4 cut(s)	4, 791, 807, 854
AcoI	YGGCCR	1 cut(s)	855
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	4 cut(s)	249, 253, 509, 707
AflII	CTTAAG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	760
AgsI	TTSAA	6 cut(s)	27, 107, 272, 495, 609, 787
AjiI	CACGTC	1 cut(s)	829
AjnI	CCWGG	2 cut(s)	508, 745
AluBI	AGCT	5 cut(s)	121, 194, 290, 304, 542
AluI	AGCT	5 cut(s)	121, 194, 290, 304, 542
Alw26I	GTCTC	2 cut(s)	442, 837
AoxI	GGCC	4 cut(s)	506, 698, 855, 879
AsuHPI	GGTGA	5 cut(s)	80, 130, 524, 533, 793
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BccI	CCATC	4 cut(s)	380, 474, 575, 707
BciT130I	CCWGG	2 cut(s)	510, 747
BclI	TGATCA	2 cut(s)	135, 637
BcoDI	GTCTC	2 cut(s)	442, 837
BfaI	CTAG	2 cut(s)	12, 357
BfmI	CTRYAG	1 cut(s)	732
BfrI	CTTAAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	856
Bme1390I	CCNGG	2 cut(s)	510, 747
BmgBI	CACGTC	1 cut(s)	829
BmiI	GGNNCC	1 cut(s)	900
BmrFI	CCNGG	2 cut(s)	510, 747
BmrI	ACTGGG	2 cut(s)	260, 375
BmuI	ACTGGG	2 cut(s)	260, 375
BsaJI	CCNNGG	2 cut(s)	503, 746
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 253, 509, 707
Bse1I	ACTGG	3 cut(s)	266, 309, 370
BseBI	CCWGG	2 cut(s)	510, 747
BseDI	CCNNGG	2 cut(s)	503, 746
BseLI	CCNNNNNNNGG	4 cut(s)	249, 253, 509, 707
BseNI	ACTGG	3 cut(s)	266, 309, 370
BseRI	GAGGAG	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	4 cut(s)	508, 700, 857, 881
BsiSI	CCGG	1 cut(s)	882
BslFI	GGGAC	3 cut(s)	230, 576, 581
BslI	CCNNNNNNNGG	4 cut(s)	249, 253, 509, 707
BsmAI	GTCTC	2 cut(s)	442, 837
BsmBI	CGTCTC	1 cut(s)	837
BsmFI	GGGAC	3 cut(s)	230, 576, 581
BsnI	GGCC	4 cut(s)	508, 700, 857, 881
Bsp143I	GATC	4 cut(s)	135, 175, 225, 637
BspACI	CCGC	4 cut(s)	4, 791, 807, 854
BspANI	GGCC	4 cut(s)	508, 700, 857, 881
BspLI	GGNNCC	1 cut(s)	900
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	793
BsrI	ACTGG	3 cut(s)	266, 309, 370
BssECI	CCNNGG	2 cut(s)	503, 746
BssMI	GATC	4 cut(s)	135, 175, 225, 637
BssT1I	CCWWGG	1 cut(s)	503
Bst2UI	CCWGG	2 cut(s)	510, 747
Bst4CI	ACNGT	7 cut(s)	40, 82, 168, 248, 815, 848, 893
Bst6I	CTCTTC	3 cut(s)	135, 366, 482
BstAFI	CTTAAG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	702, 732
BstKTI	GATC	4 cut(s)	138, 178, 228, 640
BstMAI	GTCTC	2 cut(s)	442, 837
BstMBI	GATC	4 cut(s)	135, 175, 225, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	2 cut(s)	510, 747
BstNSI	RCATGY	1 cut(s)	764
BstSCI	CCNGG	2 cut(s)	508, 745
BstSFI	CTRYAG	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	4 cut(s)	508, 700, 857, 881
BtgZI	GCGATG	1 cut(s)	834
BtrI	CACGTC	1 cut(s)	829
BtsIMutI	CAGTG	2 cut(s)	78, 690
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	702, 732
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	4 cut(s)	65, 207, 434, 761
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	4 cut(s)	137, 177, 227, 639
DpnII	GATC	4 cut(s)	135, 175, 225, 637
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	3 cut(s)	135, 366, 482
EarI	CTCTTC	3 cut(s)	135, 366, 482
Eco130I	CCWWGG	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	508, 745
EcoT14I	CCWWGG	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	503
Esp3I	CGTCTC	1 cut(s)	837
FaeI	CATG	4 cut(s)	68, 210, 437, 764
FalI	AAGNNNNNCTT	2 cut(s)	487, 519
FaqI	GGGAC	3 cut(s)	230, 576, 581
FatI	CATG	4 cut(s)	64, 206, 433, 760
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	2 cut(s)	135, 637
Fnu4HI	GCNGC	1 cut(s)	855
Fsp4HI	GCNGC	1 cut(s)	855
FspBI	CTAG	2 cut(s)	12, 357
GluI	GCNGC	1 cut(s)	855
HaeIII	GGCC	4 cut(s)	508, 700, 857, 881
HapII	CCGG	1 cut(s)	882
Hin1II	CATG	4 cut(s)	68, 210, 437, 764
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	5 cut(s)	107, 218, 379, 535, 787
HpaII	CCGG	1 cut(s)	882
HphI	GGTGA	5 cut(s)	80, 130, 524, 533, 793
Hpy166II	GTNNAC	1 cut(s)	868
Hpy188I	TCNGA	4 cut(s)	135, 318, 629, 758
Hpy188III	TCNNGA	4 cut(s)	383, 403, 495, 784
Hpy8I	GTNNAC	1 cut(s)	868
Hpy99I	CGWCG	2 cut(s)	815, 878
HpyAV	CCTTC	2 cut(s)	512, 553
HpyCH4III	ACNGT	7 cut(s)	40, 82, 168, 248, 815, 848, 893
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	8 cut(s)	277, 353, 551, 572, 620, 675, 704, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	4 cut(s)	68, 210, 437, 764
Ksp22I	TGATCA	2 cut(s)	135, 637
Kzo9I	GATC	4 cut(s)	135, 175, 225, 637
LmnI	GCTCC	1 cut(s)	904
MaeI	CTAG	2 cut(s)	12, 357
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	3 cut(s)	99, 361, 521
MalI	GATC	4 cut(s)	137, 177, 227, 639
MbiI	CCGCTC	1 cut(s)	793
MboI	GATC	4 cut(s)	135, 175, 225, 637
MboII	GAAGA	4 cut(s)	122, 383, 499, 845
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	3 cut(s)	348, 663, 676
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	7 cut(s)	138, 151, 367, 522, 669, 676, 871
MseI	TTAA	3 cut(s)	297, 474, 907
MslI	CAYNNNNRTG	2 cut(s)	66, 69
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	2 cut(s)	510, 747
MvaI	CCWGG	2 cut(s)	510, 747
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	4 cut(s)	135, 175, 225, 637
NlaIII	CATG	4 cut(s)	68, 210, 437, 764
NlaIV	GGNNCC	1 cut(s)	900
NmuCI	GTSAC	1 cut(s)	521
NspI	RCATGY	1 cut(s)	764
PciI	ACATGT	1 cut(s)	760
PfeI	GAWTC	4 cut(s)	107, 379, 535, 787
PkrI	GCNGC	1 cut(s)	856
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	760
Psp6I	CCWGG	2 cut(s)	508, 745
PspGI	CCWGG	2 cut(s)	508, 745
PspN4I	GGNNCC	1 cut(s)	900
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	2 cut(s)	66, 69
SaqAI	TTAA	3 cut(s)	297, 474, 907
SatI	GCNGC	1 cut(s)	855
Sau3AI	GATC	4 cut(s)	135, 175, 225, 637
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	510, 747
SfcI	CTRYAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	2 cut(s)	66, 69
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	348, 663, 676
SsiI	CCGC	4 cut(s)	4, 791, 807, 854
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	2 cut(s)	12, 357
StyD4I	CCNGG	2 cut(s)	508, 745
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	7 cut(s)	40, 82, 168, 248, 815, 848, 893
TaiI	ACGT	1 cut(s)	831
TasI	AATT	3 cut(s)	348, 663, 676
TauI	GCSGC	1 cut(s)	857
TfiI	GAWTC	4 cut(s)	107, 379, 535, 787
Tru1I	TTAA	3 cut(s)	297, 474, 907
Tru9I	TTAA	3 cut(s)	297, 474, 907
TscAI	CASTG	2 cut(s)	85, 697
TseFI	GTSAC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	4 cut(s)	87, 500, 531, 876
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	2 cut(s)	85, 697
Vha464I	CTTAAG	1 cut(s)	473
XceI	RCATGY	1 cut(s)	764
XspI	CTAG	2 cut(s)	12, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.