Rh2BG364500

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011364
Physical Location & Seq
Reverse (-)
50639978 .. 50642920
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG364500.1

Sequence Viewer

Length: 723 bp
ATGGACGACATCAAGTCAGTCCTCGACCGCAAGGACCACTGCCTCAACATCAACAACTCCGATCTCCACTTCTTCGGCGACCTCGGAAATAGGAGACTGCTTCAGAGGATTGTGCTCGAAGCCCTCTATGAGAGAATCACTGCTCTGCGGTGGGAGTCTGCTCTCAAGGTCCGCCGTAGTATTGTTTATGGAGATCAACCAAGAAATAGGTTGGATCCATATTTACCGACAAATACTGATGGGAAAAAGCCAGTTGTGGTGTTTGTAACTGGTGGAGCGTGGATTATTGGGTATAAAGCATGGGGTTCTCTTTTAGGTCTGCAGTTGGCTGAAAGAAACATCATAGTGGCATGTGTTGATTACAGGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTCAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGGTAGATATCTTGCATATTCATAGCTATTTTAACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

240

Amino Acids

27.51

Weight (kDa)

5.83

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 71 - 124 6.3e-07 BD-FAE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 557, 626
AccIII TCCGGA 1 cut(s) 513
AciI CCGC 3 cut(s) 28, 148, 172
AclWI GGATC 2 cut(s) 209, 222
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 670
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 1 cut(s) 637
AgsI TTSAA 1 cut(s) 432
AhdI GACNNNNNGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 538, 681
AluBI AGCT 3 cut(s) 427, 463, 708
AluI AGCT 3 cut(s) 427, 463, 708
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 2 cut(s) 209, 222
Aor13HI TCCGGA 1 cut(s) 513
ApeKI GCWGC 1 cut(s) 460
AspS9I GGNCC 2 cut(s) 34, 169
AvaII GGWCC 2 cut(s) 34, 169
BamHI GGATCC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 472
BccI CCATC 2 cut(s) 233, 398
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 540, 683
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme1390I CCNGG 2 cut(s) 540, 683
Bme18I GGWCC 2 cut(s) 34, 169
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 34, 169
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 540, 683
BmsI GCATC 2 cut(s) 447, 537
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 513
Bsc4I CCNNNNNNNGG 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 251, 274
Bse8I GATNNNNATC 1 cut(s) 626
BseAI TCCGGA 1 cut(s) 513
BseBI CCWGG 2 cut(s) 540, 683
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 372, 528
BseJI GATNNNNATC 1 cut(s) 626
BseLI CCNNNNNNNGG 1 cut(s) 637
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 2 cut(s) 251, 274
BseXI GCAGC 1 cut(s) 472
Bsh1285I CGRYCG 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 637
BsmAI GTCTC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 513
Bsp143I GATC 4 cut(s) 61, 193, 214, 415
BspACI CCGC 3 cut(s) 28, 148, 172
BspCNI CTCAG 1 cut(s) 436
BspEI TCCGGA 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 2 cut(s) 209, 222
BsrI ACTGG 2 cut(s) 251, 274
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 4 cut(s) 61, 193, 214, 415
BssNI GRCGYC 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 540, 683
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 670
BstDEI CTNAG 2 cut(s) 423, 592
BstF5I GGATG 2 cut(s) 372, 528
BstKTI GATC 4 cut(s) 64, 196, 217, 418
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 4 cut(s) 61, 193, 214, 415
BstMCI CGRYCG 1 cut(s) 28
BstNI CCWGG 2 cut(s) 540, 683
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 538, 681
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BtsCI GGATG 2 cut(s) 372, 528
BtsI GCAGTG 2 cut(s) 37, 138
BtsIMutI CAGTG 3 cut(s) 37, 138, 394
Cfr13I GGNCC 2 cut(s) 34, 169
CseI GACGC 1 cut(s) 659
CsiI ACCWGGT 1 cut(s) 681
Csp6I GTAC 1 cut(s) 580
CviAII CATG 3 cut(s) 300, 351, 523
CviJI RGCY 7 cut(s) 122, 250, 329, 427, 463, 602, 708
CviKI_1 RGCY 7 cut(s) 122, 250, 329, 427, 463, 602, 708
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 423, 592
DpnI GATC 4 cut(s) 63, 195, 216, 417
DpnII GATC 4 cut(s) 61, 193, 214, 415
DriI GACNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 387
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 387
EciI GGCGGA 1 cut(s) 161
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 34, 169
Eco57I CTGAAG 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 538, 681
EcoRV GATATC 1 cut(s) 691
FaeI CATG 3 cut(s) 303, 354, 526
FatI CATG 3 cut(s) 299, 350, 522
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 461
FokI GGATG 2 cut(s) 379, 515
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 1 cut(s) 473
GluI GCNGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 437
HapII CCGG 1 cut(s) 514
HgaI GACGC 1 cut(s) 659
Hin1I GRCGYC 1 cut(s) 670
Hin1II CATG 3 cut(s) 303, 354, 526
HinfI GANTC 3 cut(s) 135, 155, 373
HpaII CCGG 1 cut(s) 514
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 4 cut(s) 61, 86, 105, 661
Hpy188III TCNNGA 3 cut(s) 454, 473, 514
Hpy8I GTNNAC 1 cut(s) 580
HpyAV CCTTC 3 cut(s) 542, 592, 637
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 4 cut(s) 322, 460, 607, 697
HpyF3I CTNAG 2 cut(s) 423, 592
Hsp92I GRCGYC 1 cut(s) 670
Hsp92II CATG 3 cut(s) 303, 354, 526
Kpn2I TCCGGA 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 61, 193, 214, 415
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 2 cut(s) 447, 537
MabI ACCWGGT 1 cut(s) 681
MaeI CTAG 1 cut(s) 473
MaeIII GTNAC 2 cut(s) 265, 436
MalI GATC 4 cut(s) 63, 195, 216, 417
MboI GATC 4 cut(s) 61, 193, 214, 415
MboII GAAGA 3 cut(s) 64, 404, 438
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 468, 476
MlyI GAGTC 2 cut(s) 164, 382
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 7 cut(s) 32, 53, 92, 99, 134, 388, 684
MroI TCCGGA 1 cut(s) 513
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 2 cut(s) 540, 683
MvaI CCWGG 2 cut(s) 540, 683
NdeII GATC 4 cut(s) 61, 193, 214, 415
NlaIII CATG 3 cut(s) 303, 354, 526
NlaIV GGNNCC 1 cut(s) 216
NspI RCATGY 1 cut(s) 354
PfeI GAWTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 462
PleI GAGTC 2 cut(s) 163, 381
PpsI GAGTC 2 cut(s) 163, 381
PsiI TTATAA 2 cut(s) 557, 626
Psp6I CCWGG 2 cut(s) 538, 681
PspGI CCWGG 2 cut(s) 538, 681
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 34, 169
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 4 cut(s) 61, 193, 214, 415
Sau96I GGNCC 2 cut(s) 34, 169
SchI GAGTC 2 cut(s) 164, 382
ScrFI CCNGG 2 cut(s) 540, 683
SduI GDGCHC 1 cut(s) 117
SexAI ACCWGGT 1 cut(s) 681
SfaNI GCATC 2 cut(s) 447, 537
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 34, 169
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 468, 476
SsiI CCGC 3 cut(s) 28, 148, 172
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 2 cut(s) 538, 681
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 24, 117
TasI AATT 2 cut(s) 468, 476
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 3 cut(s) 44, 145, 394
TseI GCWGC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 692
TspRI CASTG 3 cut(s) 44, 145, 394
VpaK11BI GGWCC 2 cut(s) 34, 169
XbaI TCTAGA 1 cut(s) 472
XceI RCATGY 1 cut(s) 354
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.