Rw0G003600

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00134
OG0011364
Physical Location & Seq
Reverse (-)
20073 .. 21895
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003600.1

Sequence Viewer

Length: 624 bp
ATGGAGATCAACCAAGAAATAGGTAGGTTGGATCTATATTTACCGACAAATACTGATGGGAAAAAGCCAGTTGTGGTGTTTGTAACTGGTGGAGCGTGGATTATTGGGTATAAAGCATGGGGTTCTCTTTTAGGTCTGCAGTTGGCTGAAAGAAACATCATAGTGGCATGTGTTGATTACAGGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTCAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAAAATTTGCTTCTTTCTGAGTTCTGGCGTCCTCTTTACCAGAAATCAGCATGGCTAGCAATATTTTATATGTGTATACCGACTGGAGTTGCTATAGGCTATGTTTCCAGCGGATTTCCTCTTTCATGGATTTCTGACAATGCTCCACAGTTGAGCATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

4.78

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 10 - 63 3e-08 BD-FAE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 374, 443
AccI GTMKAC 1 cut(s) 535
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 1 cut(s) 570
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 463
AcyI GRCGYC 1 cut(s) 487
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 454
AgsI TTSAA 1 cut(s) 249
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 2 cut(s) 244, 280
AluI AGCT 2 cut(s) 244, 280
AlwI GGATC 1 cut(s) 39
Aor13HI TCCGGA 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 463
AsuNHI GCTAGC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 50, 215
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 232
BfaI CTAG 2 cut(s) 290, 515
BfmI CTRYAG 2 cut(s) 137, 552
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 264, 354
BmtI GCTAGC 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 254, 564
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 487
BsaWI WCCGGW 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse1I ACTGG 3 cut(s) 68, 91, 547
Bse8I GATNNNNATC 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 189, 345
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMII CTCAG 2 cut(s) 254, 468
BseNI ACTGG 3 cut(s) 68, 91, 547
BseXI GCAGC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 454
BsmI GAATGC 1 cut(s) 615
Bsp13I TCCGGA 1 cut(s) 330
Bsp143I GATC 3 cut(s) 6, 31, 232
BspACI CCGC 1 cut(s) 570
BspCNI CTCAG 2 cut(s) 253, 469
BspEI TCCGGA 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 518
BspPI GGATC 1 cut(s) 39
BsrI ACTGG 3 cut(s) 68, 91, 547
BssMI GATC 3 cut(s) 6, 31, 232
BssNAI GTATAC 1 cut(s) 536
BssNI GRCGYC 1 cut(s) 487
Bst1107I GTATAC 1 cut(s) 536
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 253, 609
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 3 cut(s) 240, 409, 477
BstF5I GGATG 2 cut(s) 189, 345
BstKTI GATC 3 cut(s) 9, 34, 235
BstMBI GATC 3 cut(s) 6, 31, 232
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 2 cut(s) 137, 552
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BstZ17I GTATAC 1 cut(s) 536
BtsCI GGATG 2 cut(s) 189, 345
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 516
CseI GACGC 1 cut(s) 476
Csp6I GTAC 1 cut(s) 397
CviAII CATG 5 cut(s) 117, 168, 340, 510, 585
CviJI RGCY 7 cut(s) 67, 146, 244, 280, 419, 514, 558
CviKI_1 RGCY 7 cut(s) 67, 146, 244, 280, 419, 514, 558
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 3 cut(s) 240, 409, 477
DpnI GATC 3 cut(s) 8, 33, 234
DpnII GATC 3 cut(s) 6, 31, 232
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 5 cut(s) 120, 171, 343, 513, 588
FatI CATG 5 cut(s) 116, 167, 339, 509, 584
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 2 cut(s) 196, 332
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 2 cut(s) 290, 515
GluI GCNGC 1 cut(s) 278
GsuI CTGGAG 2 cut(s) 254, 564
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 476
Hin1I GRCGYC 1 cut(s) 487
Hin1II CATG 5 cut(s) 120, 171, 343, 513, 588
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 397, 536
Hpy188I TCNGA 2 cut(s) 478, 595
Hpy188III TCNNGA 3 cut(s) 271, 290, 331
Hpy8I GTNNAC 2 cut(s) 397, 536
HpyAV CCTTC 2 cut(s) 359, 409
HpyCH4III ACNGT 2 cut(s) 253, 609
HpyCH4V TGCA 3 cut(s) 139, 277, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 3 cut(s) 240, 409, 477
Hsp92I GRCGYC 1 cut(s) 487
Hsp92II CATG 5 cut(s) 120, 171, 343, 513, 588
Kpn2I TCCGGA 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 6, 31, 232
LmnI GCTCC 2 cut(s) 92, 607
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 2 cut(s) 264, 354
MaeI CTAG 2 cut(s) 290, 515
MaeIII GTNAC 2 cut(s) 82, 253
MalI GATC 3 cut(s) 8, 33, 234
MboI GATC 3 cut(s) 6, 31, 232
MboII GAAGA 2 cut(s) 221, 255
MflI RGATCY 1 cut(s) 31
MluCI AATT 3 cut(s) 285, 293, 463
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 3 cut(s) 205, 501, 588
MroI TCCGGA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 570
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 515
NdeII GATC 3 cut(s) 6, 31, 232
NheI GCTAGC 1 cut(s) 514
NlaIII CATG 5 cut(s) 120, 171, 343, 513, 588
NspI RCATGY 1 cut(s) 171
PctI GAATGC 1 cut(s) 615
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PsiI TTATAA 2 cut(s) 374, 443
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PstI CTGCAG 1 cut(s) 141
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 3 cut(s) 6, 31, 232
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 357
SetI ASST 6 cut(s) 25, 29, 136, 246, 282, 361
SfaNI GCATC 2 cut(s) 264, 354
SfcI CTRYAG 2 cut(s) 137, 552
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 3 cut(s) 285, 293, 463
SsiI CCGC 1 cut(s) 570
SspI AATATT 1 cut(s) 522
SspMI CTAG 2 cut(s) 290, 515
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 253, 609
TasI AATT 3 cut(s) 285, 293, 463
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 573
TspRI CASTG 1 cut(s) 211
XapI RAATTY 1 cut(s) 463
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 535
XspI CTAG 2 cut(s) 290, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.