Rh5CG023500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011364
Physical Location & Seq
Forward (+)
1490406 .. 1494975
4570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG023500.1

Sequence Viewer

Length: 297 bp
ATGATAGAAGAGAAAAGCGCCGGCAGAGCTGGAATCGTTGACCGAGCTGGAATCGAGTTGATCTCCGGCGAAAGAGATCCGTTATCTCCGGCGTTCGCCTCAATTCCACTGCTGCCCGCTGCAAATCAATCATCTCCGGCGAGATTCGACGCTCGAGCTCGACCTCCGGTGCTCAATCCAGGCTCTCCGGCGCTCGTCACAGGCAGGTGGCAGAGGAGAACGTTTATCTGGTGCGCCGGAGGCGGAGGAGCAAATACCCAAAACGAGACGTGGAGCAGCCGAGCAGGAGATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.33

Weight (kDa)

9.47

Isoelectric Point (pI)

66.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 195
AciI CCGC 2 cut(s) 117, 243
AclI AACGTT 1 cut(s) 221
AclWI GGATC 2 cut(s) 71, 284
AjiI CACGTC 1 cut(s) 270
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 3 cut(s) 29, 47, 158
AluI AGCT 3 cut(s) 29, 47, 158
Alw21I GWGCWC 2 cut(s) 160, 174
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 71, 284
Ama87I CYCGRG 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 112, 119, 276
AspLEI GCGC 3 cut(s) 20, 193, 236
AvaI CYCGRG 1 cut(s) 153
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 160, 174
BbvI GCAGC 3 cut(s) 99, 106, 288
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 260
BfoI RGCGCY 2 cut(s) 21, 194
BfuAI ACCTGC 1 cut(s) 195
BisI GCNGC 3 cut(s) 113, 120, 277
BlsI GCNGC 3 cut(s) 114, 121, 278
Bme1390I CCNGG 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BsaWI WCCGGW 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 20
BseBI CCWGG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 229, 261
BseXI GCAGC 3 cut(s) 99, 106, 288
BsiHKAI GWGCWC 2 cut(s) 160, 174
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 7 cut(s) 21, 66, 89, 137, 167, 188, 237
BsmAI GTCTC 1 cut(s) 260
BsmBI CGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 160, 174
Bsp143I GATC 3 cut(s) 60, 76, 289
BspACI CCGC 2 cut(s) 117, 243
BspMI ACCTGC 1 cut(s) 195
BspPI GGATC 2 cut(s) 71, 284
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 3 cut(s) 60, 76, 289
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 22, 117
BstH2I RGCGCY 2 cut(s) 21, 194
BstHHI GCGC 3 cut(s) 20, 193, 236
BstKTI GATC 3 cut(s) 63, 79, 292
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 3 cut(s) 60, 76, 289
BstMWI GCNNNNNNNGC 2 cut(s) 26, 240
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 99, 106, 288
BstX2I RGATCY 2 cut(s) 76, 289
BstYI RGATCY 2 cut(s) 76, 289
BtrI CACGTC 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 22, 117
CfoI GCGC 3 cut(s) 20, 193, 236
Cfr10I RCCGGY 1 cut(s) 20
CseI GACGC 1 cut(s) 158
CviAII CATG 1 cut(s) 294
CviJI RGCY 5 cut(s) 29, 47, 158, 183, 279
CviKI_1 RGCY 5 cut(s) 29, 47, 158, 183, 279
DpnI GATC 3 cut(s) 62, 78, 291
DpnII GATC 3 cut(s) 60, 76, 289
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 1 cut(s) 297
FaiI YATR 1 cut(s) 295
FatI CATG 1 cut(s) 293
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 113, 120, 277
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 113, 120, 277
GlaI GCGC 3 cut(s) 19, 192, 235
GluI GCNGC 3 cut(s) 113, 120, 277
HaeII RGCGCY 2 cut(s) 21, 194
HapII CCGG 7 cut(s) 21, 66, 89, 137, 167, 188, 237
HgaI GACGC 1 cut(s) 158
HhaI GCGC 3 cut(s) 20, 193, 236
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 3 cut(s) 18, 191, 234
HinP1I GCGC 3 cut(s) 18, 191, 234
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 3 cut(s) 33, 51, 144
HpaII CCGG 7 cut(s) 21, 66, 89, 137, 167, 188, 237
Hpy166II GTNNAC 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 152
HpyCH4IV ACGT 2 cut(s) 221, 269
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 240
HpySE526I ACGT 2 cut(s) 221, 269
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 3 cut(s) 18, 191, 234
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 60, 76, 289
LmnI GCTCC 2 cut(s) 248, 273
Lsp1109I GCAGC 3 cut(s) 99, 106, 288
MaeII ACGT 2 cut(s) 221, 269
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 62, 78, 291
MboI GATC 3 cut(s) 60, 76, 289
MboII GAAGA 1 cut(s) 20
MflI RGATCY 2 cut(s) 76, 289
MhlI GDGCHC 2 cut(s) 160, 174
MluCI AATT 1 cut(s) 102
MnlI CCTC 5 cut(s) 109, 174, 207, 233, 239
MroNI GCCGGC 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 7 cut(s) 21, 66, 89, 137, 167, 188, 237
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 26, 240
NaeI GCCGGC 1 cut(s) 22
NdeII GATC 3 cut(s) 60, 76, 289
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 33, 51, 144
PkrI GCNGC 3 cut(s) 114, 121, 278
Psp124BI GAGCTC 1 cut(s) 160
Psp1406I AACGTT 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspXI VCTCGAGB 1 cut(s) 153
PsuI RGATCY 2 cut(s) 76, 289
SacI GAGCTC 1 cut(s) 160
SatI GCNGC 3 cut(s) 113, 120, 277
Sau3AI GATC 3 cut(s) 60, 76, 289
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 2 cut(s) 160, 174
SetI ASST 7 cut(s) 31, 49, 160, 166, 209, 224, 272
Sfr274I CTCGAG 1 cut(s) 153
SlaI CTCGAG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 102
SsiI CCGC 2 cut(s) 117, 243
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 178
TaiI ACGT 2 cut(s) 224, 272
TaqI TCGA 4 cut(s) 54, 147, 154, 160
TaqII GACCGA 1 cut(s) 57
TasI AATT 1 cut(s) 102
TfiI GAWTC 3 cut(s) 33, 51, 144
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 112, 119, 276
Tsp45I GTSAC 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.