Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011364

Physical Location & Seq

Genomic Coordinates Forward (+)

10663942 .. 10666723

Gene Structure 2782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATTGTCTGGTTCTGGAGGAAATGGAGTATGGGGATGATTTGGATAAGTTGACCAGTAGAGCTATCAATGCTTTGATTGTTCTGGGATTTGGGACCTTTGCGTGTCTAAAATTATTGACGAGAGCACCAAAGGATCCTGTTGAACCCGAAAAAGTTCTTAAAGCAGCCCAAGTCAAACTCGTCCTCACCACTCAAGTGTATGATATGCAATTTGAGGTCAATGAAATAGAAGCAAGGAGAGAGCAATATCCTTCAACAATATCCTTCCTTAACCTGTTAAATGCTCTTATATCTGAAGAAAGAGACTTAAGTGATAGAGGGCGCAGATTCATTGGAATTTTTAGGTTCATTTATGATCATGGTTTTAGGCCATTCCCTCAAAGAGCCTATGCCGATCCTTGTGAGAAATGGCAATTAGTTGTTGCATGTCTTCAGCACTTTCATATGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGCATTTCTAAAAATTTTAACAGACCACGTTATGGGTTGGCTCCGCACAAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

204

Amino Acids

23.51

Weight (kDa)

5.01

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15860
rosa_laevigata	RLG00000012611
rosa_multiflora	Rmu_sc0002869.1_g000014 Rmu_sc0008270.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034560 Rroxscaffold_2G00077890 Rroxscaffold_4G00290430
rosa_samantha	Rh2BG364500 Rh4CG080100 Rh5AG134100 Rh5CG023500 Rh5CG128100 Rh5DG508100 Rh6AG206900 Rh6AG227100 Rh7AG439500 Rh7CG459200 Rh7DG428900
rosa_wichuraiana	Rw0G003600 Rw7G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	589
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	3 cut(s)	131, 144, 392
AcsI	RAATTY	2 cut(s)	339, 570
AcuI	CTGAAG	2 cut(s)	318, 419
AfiI	CCNNNNNNNGG	1 cut(s)	589
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	3 cut(s)	146, 258, 516
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	3 cut(s)	65, 511, 547
AluI	AGCT	3 cut(s)	65, 511, 547
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	3 cut(s)	131, 144, 392
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	167, 544
ApoI	RAATTY	2 cut(s)	339, 570
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	179, 556
BccI	CCATC	1 cut(s)	482
BclI	TGATCA	2 cut(s)	358, 499
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	557
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	2 cut(s)	168, 545
BlsI	GCNGC	2 cut(s)	169, 546
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	3 cut(s)	97, 138, 599
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	38, 521
BpuEI	CTTGAG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	179, 556
BshFI	GGCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	136, 358, 397, 499
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	1 cut(s)	520
BspLI	GGNNCC	3 cut(s)	97, 138, 599
BspPI	GGATC	3 cut(s)	131, 144, 392
BspTI	CTTAAG	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	4 cut(s)	136, 358, 397, 499
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	471
BstAFI	CTTAAG	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	4 cut(s)	139, 361, 400, 502
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	4 cut(s)	136, 358, 397, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	179, 556
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	96
CviAII	CATG	2 cut(s)	362, 429
CviJI	RGCY	7 cut(s)	65, 170, 373, 389, 511, 547, 598
CviKI_1	RGCY	7 cut(s)	65, 170, 373, 389, 511, 547, 598
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	4 cut(s)	138, 360, 399, 501
DpnII	GATC	4 cut(s)	136, 358, 397, 499
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	318, 419
EcoO109I	RGGNCCY	1 cut(s)	96
FaeI	CATG	2 cut(s)	365, 432
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	361, 428
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	2 cut(s)	358, 499
Fnu4HI	GCNGC	2 cut(s)	168, 545
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	168, 545
FspBI	CTAG	1 cut(s)	557
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	2 cut(s)	168, 545
GsuI	CTGGAG	2 cut(s)	38, 521
HaeIII	GGCC	1 cut(s)	373
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	365, 432
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	330, 457
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	17, 538
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	264, 277
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	3 cut(s)	211, 428, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	2 cut(s)	365, 432
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	2 cut(s)	358, 499
Kzo9I	GATC	4 cut(s)	136, 358, 397, 499
LmnI	GCTCC	1 cut(s)	603
LpnPI	CCDG	6 cut(s)	2, 70, 71, 153, 290, 551
Lsp1109I	GCAGC	2 cut(s)	179, 556
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	138, 360, 399, 501
MboI	GATC	4 cut(s)	136, 358, 397, 499
MboII	GAAGA	4 cut(s)	311, 425, 488, 522
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	7 cut(s)	4, 113, 212, 339, 416, 552, 570
MlyI	GAGTC	1 cut(s)	466
MnlI	CCTC	6 cut(s)	13, 197, 211, 314, 390, 472
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	5 cut(s)	162, 273, 281, 311, 575
MslI	CAYNNNNRTG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	4 cut(s)	136, 358, 397, 499
NlaIII	CATG	2 cut(s)	365, 432
NlaIV	GGNNCC	3 cut(s)	97, 138, 599
NspI	RCATGY	1 cut(s)	432
OliI	CACNNNNGTG	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	2 cut(s)	169, 546
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	97, 138, 599
PspPI	GGNCC	1 cut(s)	96
PspPPI	RGGWCCY	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	5 cut(s)	162, 273, 281, 311, 575
SatI	GCNGC	2 cut(s)	168, 545
Sau3AI	GATC	4 cut(s)	136, 358, 397, 499
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	1 cut(s)	466
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	8 cut(s)	67, 101, 222, 279, 350, 513, 549, 588
SfaNI	GCATC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	195, 310
SmoI	CTYRAG	2 cut(s)	195, 310
Sse9I	AATT	7 cut(s)	4, 113, 212, 339, 416, 552, 570
SsiI	CCGC	1 cut(s)	601
SspMI	CTAG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	588
TasI	AATT	7 cut(s)	4, 113, 212, 339, 416, 552, 570
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	5 cut(s)	162, 273, 281, 311, 575
Tru9I	TTAA	5 cut(s)	162, 273, 281, 311, 575
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	2 cut(s)	167, 544
TspDTI	ATGAA	5 cut(s)	17, 240, 322, 340, 434
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	589
Vha464I	CTTAAG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	96
XapI	RAATTY	2 cut(s)	339, 570
XceI	RCATGY	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.