Rroxscaffold_2G00077890

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011364
Physical Location & Seq
Forward (+)
1342209 .. 1343536
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077890.1

Sequence Viewer

Length: 633 bp
ATGTTACAGGTGTATGATATGCAATTTGAGCTCAATGAAATAGAAGCAAGGAGAGAGCAATATCCTTCAACAATATCCTTCCTTAACCTGTTAAATGCTCTTATATCTGAAGAAAGAGACTTAAGTGATAGAGAGCGCAGGATGTTGAGTCTGTATGACATCAATGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCTAGTGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGGTGCATGTTAATGCAACAGAAACCCTTTGTGCTATAACAAGGCTTGCTCCACCTGGACTTGCTACTAAAATCTGTAATCCGAGTTTTATACAAAGATTGCTTCAGCATGCTATGGAGGACTCTCAACGAAAATCTGTTCTCACTAGCTCATTATCAGTTTGCATCTCTTTGTTAGACCGTGAGAGGGAAGCTTTGAGAACAAATGCATGTACTGGTGAACACCAGCCTGCTCATGGATCTACAATTACTGTTAATAACGAGATTGTTGTGGGCTTGTGGCCATGCTCAACAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

210

Amino Acids

23.72

Weight (kDa)

4.8

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AclWI GGATC 1 cut(s) 580
AcoI YGGCCR 1 cut(s) 614
AcuI CTGAAG 2 cut(s) 129, 422
AcyI GRCGYC 1 cut(s) 322
AfaI GTAC 2 cut(s) 233, 547
AfiI CCNNNNNNNGG 3 cut(s) 289, 520, 569
AflII CTTAAG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 69, 207
AjnI CCWGG 2 cut(s) 333, 388
AluBI AGCT 4 cut(s) 31, 202, 483, 527
AluI AGCT 4 cut(s) 31, 202, 483, 527
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 580
AoxI GGCC 1 cut(s) 614
AspLEI GCGC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 563
BalI TGGCCA 1 cut(s) 616
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 335, 390
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 3 cut(s) 225, 480, 631
BfrI CTTAAG 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 335, 390
BmrFI CCNGG 2 cut(s) 335, 390
BmsI GCATC 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 322
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 520, 569
Bse1I ACTGG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 2 cut(s) 335, 390
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 289, 520, 569
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 553
BshFI GGCC 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 33
BslI CCNNNNNNNGG 3 cut(s) 289, 520, 569
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 2 cut(s) 190, 572
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 580
BspTI CTTAAG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 553
BssMI GATC 2 cut(s) 190, 572
BssNI GRCGYC 1 cut(s) 322
Bst2UI CCWGG 2 cut(s) 335, 390
Bst4CI ACNGT 3 cut(s) 211, 515, 586
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 381, 444, 564
BstDEI CTNAG 2 cut(s) 198, 244
BstF5I GGATG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 2 cut(s) 193, 575
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 190, 572
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 2 cut(s) 335, 390
BstNSI RCATGY 3 cut(s) 344, 446, 546
BstSCI CCNGG 2 cut(s) 333, 388
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 1 cut(s) 616
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 3 cut(s) 381, 444, 564
CfoI GCGC 1 cut(s) 138
CseI GACGC 1 cut(s) 311
CsiI ACCWGGT 1 cut(s) 333
Csp6I GTAC 2 cut(s) 232, 546
CviAII CATG 5 cut(s) 341, 443, 543, 569, 618
CviQI GTAC 2 cut(s) 232, 546
DdeI CTNAG 2 cut(s) 198, 244
DpnI GATC 2 cut(s) 192, 574
DpnII GATC 2 cut(s) 190, 572
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 129, 422
EcoICRI GAGCTC 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 333, 388
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 5 cut(s) 344, 446, 546, 572, 621
FatI CATG 5 cut(s) 340, 442, 542, 568, 617
FbaI TGATCA 1 cut(s) 190
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 33
FspBI CTAG 3 cut(s) 225, 480, 631
GlaI GCGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 616
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 5 cut(s) 344, 446, 546, 572, 621
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 2 cut(s) 148, 455
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 2 cut(s) 232, 554
Hpy188I TCNGA 3 cut(s) 109, 313, 417
Hpy8I GTNNAC 2 cut(s) 232, 554
HpyAV CCTTC 4 cut(s) 75, 88, 244, 289
HpyCH4III ACNGT 3 cut(s) 211, 515, 586
HpyCH4V TGCA 6 cut(s) 22, 259, 340, 350, 498, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 2 cut(s) 198, 244
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 5 cut(s) 344, 446, 546, 572, 621
HspAI GCGC 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 572
LmnI GCTCC 1 cut(s) 388
LweI GCATC 1 cut(s) 507
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 3 cut(s) 225, 480, 631
MaeIII GTNAC 2 cut(s) 3, 211
MalI GATC 2 cut(s) 192, 574
MboI GATC 2 cut(s) 190, 572
MboII GAAGA 3 cut(s) 122, 179, 213
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 2 cut(s) 23, 579
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 2 cut(s) 157, 449
MnlI CCTC 4 cut(s) 163, 336, 445, 513
Mox20I TGGCCA 1 cut(s) 616
Mph1103I ATGCAT 1 cut(s) 544
MscI TGGCCA 1 cut(s) 616
MseI TTAA 5 cut(s) 84, 92, 122, 345, 588
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 616
MspCI CTTAAG 1 cut(s) 121
MspR9I CCNGG 2 cut(s) 335, 390
MvaI CCWGG 2 cut(s) 335, 390
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 2 cut(s) 190, 572
NlaIII CATG 5 cut(s) 344, 446, 546, 572, 621
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 3 cut(s) 344, 446, 546
PaeI GCATGC 1 cut(s) 446
PleI GAGTC 2 cut(s) 156, 449
PpsI GAGTC 2 cut(s) 156, 449
PsiI TTATAA 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 333, 388
PspGI CCWGG 2 cut(s) 333, 388
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 2 cut(s) 233, 547
RsaNI GTAC 2 cut(s) 232, 546
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 5 cut(s) 84, 92, 122, 345, 588
Sau3AI GATC 2 cut(s) 190, 572
SchI GAGTC 2 cut(s) 157, 449
ScrFI CCNGG 2 cut(s) 335, 390
SduI GDGCHC 1 cut(s) 33
SetI ASST 8 cut(s) 12, 33, 90, 204, 339, 391, 485, 529
SexAI ACCWGGT 1 cut(s) 333
SfaNI GCATC 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SphI GCATGC 1 cut(s) 446
Sse9I AATT 2 cut(s) 23, 579
SspMI CTAG 3 cut(s) 225, 480, 631
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 333, 388
TaaI ACNGT 3 cut(s) 211, 515, 586
TasI AATT 2 cut(s) 23, 579
TatI WGTACW 1 cut(s) 545
Tru1I TTAA 5 cut(s) 84, 92, 122, 345, 588
Tru9I TTAA 5 cut(s) 84, 92, 122, 345, 588
TspDTI ATGAA 2 cut(s) 51, 180
Vha464I CTTAAG 1 cut(s) 121
XceI RCATGY 3 cut(s) 344, 446, 546
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
XspI CTAG 3 cut(s) 225, 480, 631
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.