Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011364

Physical Location & Seq

Genomic Coordinates Forward (+)

60613514 .. 60621862

Gene Structure 8349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG459200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGACGTCATTAGGAAAATGGGAGACGTCATTAGCTGCATTTAATGATCTTCGTGAAGCTGCATTTAATTTTTCTGCTGGCGGGCGTAGTTGGAGTAATGATCTTCGTGAAGCTGCATTTAATTTTTCTGCTGGCGGGCGTAGTTGGCGTTGGCGTAATGATGGCGAGCGTAGTTGGCGTAATGCTCTTCGTGAAGCTGCAAGTTTGTCTGGCTGGCATCTTGGTATTGATGTGCTTTCCGGTGCTAGATCAAGGTTCTCCGGCGCTCAACCGGAGCCAACGACAGAGTTTGATGTTCAACCGGAGCCTGAATCCAAACTGGAATTACAACTCGGTACTAGAGTCGATGCTGCAGATCCGATGATGGAAGAGAAAAGTGCCGGCAGAGCTGGAATAGTTGACCGAGCTGGAATCGCGTTGATCTCCGGCGAAAGAGATCTGTTATCTCCGGCGTTCGCCTCAATTCCACTGCTGCCCGCTGCAAATCAGTCATCTCCGGCGAGATTCGGCGCTCGAGCTCGACCTCCGGTGCTCAATCCAGGCTCTCCGGCTCTCGTCACAGGCCGGTGGCAGAGGAGAACGTTGATCTGTATTACTAATCTCTTGAATCTGTCCGGTACCACCACCGCCGATGGTGGCGATGATGGAGTGGAAGAAGATAGAGACAGTGGTGCGGCCAATGAAGTGGACACCAACGAGGCTGGGGATGGACGGGAAAGGAACGATGGAATCGATCATGATTTCGCAAGCACTGTTTGTGATTTGTCCCCGAAACTGCAGGTAATATTTCCTTCTTGTAGTTCAAGAGTACCTGAACTTTGTCAAGCACATCATGGTGATGAAGCTACTGTTCCACTAAAGGAGAAGTTACTTGAATCTTGTATTGAGCTTCGCCCTCTTCTGATCACCTCCCACAGCAGACTAAAAGATATACTGTTCCTTGATCTTGCTTTGGCTTCAGCTGTCAAAACAACATGGAAAGGGGACTCACAGATCTACATTTTTCTAACCCACCGTTGGCAGGTCATCAACCCAGTTGAAGTGCAGGGTATTATAGCTTCGGTTAATGAGCTAATTAGTATTTTTTTGTGTGTTATGTACATACACTACAGAGGCATCACAATTGTTGGGCAAAATCTTGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

382

Amino Acids

41.61

Weight (kDa)

5.23

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15860
rosa_laevigata	RLG00000012611
rosa_multiflora	Rmu_sc0002869.1_g000014 Rmu_sc0008270.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034560 Rroxscaffold_2G00077890 Rroxscaffold_4G00290430
rosa_samantha	Rh2BG364500 Rh4CG080100 Rh5AG134100 Rh5CG023500 Rh5CG128100 Rh5DG508100 Rh6AG206900 Rh6AG227100 Rh7AG439500 Rh7CG459200 Rh7DG428900
rosa_wichuraiana	Rw0G003600 Rw7G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	8, 29
Acc36I	ACCTGC	2 cut(s)	769, 1012
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	617
AccII	CGCG	1 cut(s)	416
AciI	CCGC	5 cut(s)	81, 135, 477, 627, 674
AclI	AACGTT	1 cut(s)	581
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	675
AcuI	CTGAAG	1 cut(s)	942
AcyI	GRCGYC	2 cut(s)	5, 26
AfaI	GTAC	4 cut(s)	337, 619, 810, 1100
AfiI	CCNNNNNNNGG	2 cut(s)	1017, 1021
AgsI	TTSAA	5 cut(s)	299, 607, 804, 875, 1040
AjnI	CCWGG	1 cut(s)	538
Alw21I	GWGCWC	2 cut(s)	520, 534
Alw26I	GTCTC	2 cut(s)	17, 657
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	562, 675
ApeKI	GCWGC	7 cut(s)	35, 59, 113, 197, 350, 472, 479
Asp718I	GGTACC	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	266, 512
AsuHPI	GGTGA	2 cut(s)	848, 898
AvaI	CYCGRG	1 cut(s)	513
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	520
BarI	GAAGNNNNNNTAC	2 cut(s)	1042, 1074
Bbv12I	GWGCWC	2 cut(s)	520, 534
BbvI	GCAGC	7 cut(s)	22, 46, 100, 184, 337, 459, 466
BccI	CCATC	6 cut(s)	155, 358, 626, 638, 701, 719
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	903
BcoDI	GTCTC	2 cut(s)	17, 657
BfaI	CTAG	2 cut(s)	246, 339
BfmI	CTRYAG	3 cut(s)	351, 776, 1108
BfoI	RGCGCY	2 cut(s)	267, 513
BfuAI	ACCTGC	2 cut(s)	769, 1012
BglII	AGATCT	2 cut(s)	436, 993
BisI	GCNGC	8 cut(s)	36, 60, 114, 198, 351, 473, 480, 675
BlsI	GCNGC	8 cut(s)	37, 61, 115, 199, 352, 474, 481, 676
Bme1390I	CCNGG	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	513
BmiI	GGNNCC	3 cut(s)	276, 306, 619
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	1028
BmsI	GCATC	3 cut(s)	226, 337, 1125
BmuI	ACTGGG	1 cut(s)	1028
Bsa29I	ATCGAT	1 cut(s)	732
BsaHI	GRCGYC	2 cut(s)	5, 26
BsaWI	WCCGGW	5 cut(s)	239, 271, 301, 526, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	1017, 1021
Bse118I	RCCGGY	2 cut(s)	380, 564
Bse1I	ACTGG	2 cut(s)	324, 1034
BseBI	CCWGG	1 cut(s)	540
BseCI	ATCGAT	1 cut(s)	732
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	2 cut(s)	1017, 1021
BseNI	ACTGG	2 cut(s)	324, 1034
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	7 cut(s)	22, 46, 100, 184, 337, 459, 466
BseYI	CCCAGC	1 cut(s)	701
BsgI	GTGCAG	1 cut(s)	1064
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	564, 677
BshNI	GGYRCC	1 cut(s)	617
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	520, 534
BsiHKCI	CYCGRG	1 cut(s)	513
BslFI	GGGAC	2 cut(s)	751, 998
BslI	CCNNNNNNNGG	2 cut(s)	1017, 1021
BsmAI	GTCTC	2 cut(s)	17, 657
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	2 cut(s)	751, 998
BsnI	GGCC	2 cut(s)	564, 677
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	520, 534
Bsp1407I	TGTACA	1 cut(s)	1098
BspACI	CCGC	5 cut(s)	81, 135, 477, 627, 674
BspANI	GGCC	2 cut(s)	564, 677
BspDI	ATCGAT	1 cut(s)	732
BspFNI	CGCG	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	3 cut(s)	276, 306, 619
BspMAI	CTGCAG	2 cut(s)	355, 780
BspMI	ACCTGC	2 cut(s)	769, 1012
BspPI	GGATC	1 cut(s)	350
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	617
BsrFI	RCCGGY	2 cut(s)	380, 564
BsrGI	TGTACA	1 cut(s)	1098
BsrI	ACTGG	2 cut(s)	324, 1034
BssAI	RCCGGY	2 cut(s)	380, 564
BssNI	GRCGYC	2 cut(s)	5, 26
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	5 cut(s)	668, 754, 850, 936, 1016
Bst6I	CTCTTC	3 cut(s)	192, 363, 903
BstACI	GRCGYC	2 cut(s)	5, 26
BstAUI	TGTACA	1 cut(s)	1098
BstC8I	GCNNGC	9 cut(s)	79, 83, 133, 137, 167, 215, 382, 477, 748
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	2 cut(s)	267, 513
BstHHI	GCGC	2 cut(s)	266, 512
BstMAI	GTCTC	2 cut(s)	17, 657
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 175, 386, 413
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	3 cut(s)	351, 776, 1108
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	7 cut(s)	22, 46, 100, 184, 337, 459, 466
BstX2I	RGATCY	3 cut(s)	355, 436, 993
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	3 cut(s)	355, 436, 993
Bsu15I	ATCGAT	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	564, 677
BsuTUI	ATCGAT	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	467, 673, 750
BveI	ACCTGC	2 cut(s)	769, 1012
Cac8I	GCNNGC	9 cut(s)	79, 83, 133, 137, 167, 215, 382, 477, 748
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	2 cut(s)	266, 512
Cfr10I	RCCGGY	2 cut(s)	380, 564
ClaI	ATCGAT	1 cut(s)	732
Csp6I	GTAC	4 cut(s)	336, 618, 809, 1099
CviAII	CATG	3 cut(s)	737, 833, 975
CviQI	GTAC	4 cut(s)	336, 618, 809, 1099
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	3 cut(s)	192, 363, 903
EarI	CTCTTC	3 cut(s)	192, 363, 903
Ecl136II	GAGCTC	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	3 cut(s)	740, 836, 978
FaiI	YATR	8 cut(s)	738, 834, 932, 976, 1055, 1097, 1103, 1147
FaqI	GGGAC	2 cut(s)	751, 998
FatI	CATG	3 cut(s)	736, 832, 974
FauI	CCCGC	3 cut(s)	74, 128, 484
FbaI	TGATCA	1 cut(s)	903
Fnu4HI	GCNGC	8 cut(s)	36, 60, 114, 198, 351, 473, 480, 675
FokI	GGATG	1 cut(s)	719
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	8 cut(s)	36, 60, 114, 198, 351, 473, 480, 675
FspBI	CTAG	2 cut(s)	246, 339
GlaI	GCGC	2 cut(s)	265, 511
GluI	GCNGC	8 cut(s)	36, 60, 114, 198, 351, 473, 480, 675
GsaI	CCCAGC	1 cut(s)	705
HaeII	RGCGCY	2 cut(s)	267, 513
HaeIII	GGCC	2 cut(s)	564, 677
HhaI	GCGC	2 cut(s)	266, 512
Hin1I	GRCGYC	2 cut(s)	5, 26
Hin1II	CATG	3 cut(s)	740, 836, 978
Hin6I	GCGC	2 cut(s)	264, 510
HinP1I	GCGC	2 cut(s)	264, 510
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	8 cut(s)	311, 342, 411, 504, 607, 729, 875, 986
HphI	GGTGA	2 cut(s)	848, 898
Hpy166II	GTNNAC	2 cut(s)	400, 688
Hpy188I	TCNGA	2 cut(s)	360, 903
Hpy188III	TCNNGA	6 cut(s)	53, 107, 191, 604, 737, 804
Hpy8I	GTNNAC	2 cut(s)	400, 688
HpyAV	CCTTC	1 cut(s)	801
HpyCH4III	ACNGT	5 cut(s)	668, 754, 850, 936, 1016
HpyCH4IV	ACGT	3 cut(s)	5, 26, 581
HpyCH4V	TGCA	9 cut(s)	38, 62, 116, 200, 353, 482, 778, 1045, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 175, 386, 413
HpySE526I	ACGT	3 cut(s)	5, 26, 581
Hsp92I	GRCGYC	2 cut(s)	5, 26
Hsp92II	CATG	3 cut(s)	740, 836, 978
HspAI	GCGC	2 cut(s)	264, 510
KpnI	GGTACC	1 cut(s)	621
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	903
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	274, 304
Lsp1109I	GCAGC	7 cut(s)	22, 46, 100, 184, 337, 459, 466
LweI	GCATC	3 cut(s)	226, 337, 1125
MaeI	CTAG	2 cut(s)	246, 339
MaeII	ACGT	3 cut(s)	5, 26, 581
MaeIII	GTNAC	2 cut(s)	556, 867
MboII	GAAGA	7 cut(s)	41, 95, 179, 380, 665, 668, 890
MfeI	CAATTG	1 cut(s)	1122
MflI	RGATCY	3 cut(s)	355, 436, 993
MhlI	GDGCHC	2 cut(s)	520, 534
MluCI	AATT	6 cut(s)	67, 121, 323, 462, 1074, 1122
MlyI	GAGTC	2 cut(s)	351, 980
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	7 cut(s)	469, 534, 567, 691, 906, 919, 1106
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	4 cut(s)	42, 66, 120, 1065
MslI	CAYNNNNRTG	2 cut(s)	834, 837
MspA1I	CMGCKG	2 cut(s)	479, 962
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	1122
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	145, 175, 386, 413
NaeI	GCCGGC	1 cut(s)	382
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	740, 836, 978
NlaIV	GGNNCC	3 cut(s)	276, 306, 619
NmuCI	GTSAC	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	513
PagI	TCATGA	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	6 cut(s)	311, 411, 504, 607, 729, 875
PkrI	GCNGC	8 cut(s)	37, 61, 115, 199, 352, 474, 481, 676
PleI	GAGTC	2 cut(s)	350, 980
PpsI	GAGTC	2 cut(s)	350, 980
Psp124BI	GAGCTC	1 cut(s)	520
Psp1406I	AACGTT	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	276, 306, 619
PspXI	VCTCGAGB	1 cut(s)	513
PstI	CTGCAG	2 cut(s)	355, 780
PsuI	RGATCY	3 cut(s)	355, 436, 993
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	4 cut(s)	337, 619, 810, 1100
RsaNI	GTAC	4 cut(s)	336, 618, 809, 1099
RseI	CAYNNNNRTG	2 cut(s)	834, 837
SacI	GAGCTC	1 cut(s)	520
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	4 cut(s)	42, 66, 120, 1065
SatI	GCNGC	8 cut(s)	36, 60, 114, 198, 351, 473, 480, 675
SchI	GAGTC	2 cut(s)	351, 980
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	520, 534
SfaNI	GCATC	3 cut(s)	226, 337, 1125
SfcI	CTRYAG	3 cut(s)	351, 776, 1108
Sfr274I	CTCGAG	1 cut(s)	513
SlaI	CTCGAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	834, 837
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	6 cut(s)	67, 121, 323, 462, 1074, 1122
SsiI	CCGC	5 cut(s)	81, 135, 477, 627, 674
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	2 cut(s)	246, 339
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	5 cut(s)	668, 754, 850, 936, 1016
TaiI	ACGT	3 cut(s)	8, 29, 584
TaqI	TCGA	4 cut(s)	345, 514, 520, 732
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	6 cut(s)	67, 121, 323, 462, 1074, 1122
TatI	WGTACW	1 cut(s)	1098
TauI	GCSGC	1 cut(s)	677
TfiI	GAWTC	6 cut(s)	311, 411, 504, 607, 729, 875
Tru1I	TTAA	4 cut(s)	42, 66, 120, 1065
Tru9I	TTAA	4 cut(s)	42, 66, 120, 1065
TscAI	CASTG	3 cut(s)	474, 673, 757
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	7 cut(s)	35, 59, 113, 197, 350, 472, 479
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	696, 855
TspRI	CASTG	3 cut(s)	474, 673, 757
XhoI	CTCGAG	1 cut(s)	513
XspI	CTAG	2 cut(s)	246, 339
ZraI	GACGTC	2 cut(s)	6, 27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.