Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008270.1

Orthogroup ID

OG0011364

Physical Location & Seq

Genomic Coordinates Reverse (-)

21593 .. 24069

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008270.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggcttatcctctccgcagctggcccgccaattcgccagacggacccaactcagttgcttccacaacgagaaccaacccgctctctccaaggatgaacaaggcccgccttaggaggtcgttctcaaagctatttcaggtgtatgatatgcaatttgagctcaatgaaatagaagcaaggagagagcaatatccttcaacaatatccttccttaacctgttaaatgctcttatatatgaagaaagagacttaagtgatagagggcgcagattcattggaattttcaggttcatttatgatcatgtttttaggccattccctcaaagagcctatgccgatccttgtgagaaatggcaattagttgttgcatgtcttcagcactttcatatgatgttgagtctgtatgacatcagtgaagaggatattgatggtgtcattgatcaatctcagctttcaacagtaacacaatcttcactccagatgcagctaccaattctagaattgctaaaagactttatgagtggaaaatctgttttccggaacatcatgggcatccttctgcccggtgtcaataccattataactgaacgaacaaatcaagtgtacgggaaactcttagagaaggctgtgcaactctcattggagattataatccttgtcttggagaaggatttgcttctttctgatttctggcgtcctctttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

235

Amino Acids

27.39

Weight (kDa)

6.33

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15860
rosa_laevigata	RLG00000012611
rosa_multiflora	Rmu_sc0002869.1_g000014 Rmu_sc0008270.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034560 Rroxscaffold_2G00077890 Rroxscaffold_4G00290430
rosa_samantha	Rh2BG364500 Rh4CG080100 Rh5AG134100 Rh5CG023500 Rh5CG128100 Rh5DG508100 Rh6AG206900 Rh6AG227100 Rh7AG439500 Rh7CG459200 Rh7DG428900
rosa_wichuraiana	Rw0G003600 Rw7G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	581, 650
AccBSI	CCGCTC	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	537
AciI	CCGC	4 cut(s)	16, 27, 80, 106
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	694
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	2 cut(s)	111, 661
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	198, 456
AluBI	AGCT	5 cut(s)	21, 130, 160, 451, 487
AluI	AGCT	5 cut(s)	21, 130, 160, 451, 487
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	537
AoxI	GGCC	3 cut(s)	23, 102, 311
ApeKI	GCWGC	2 cut(s)	18, 484
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	24, 44, 103
AsuC2I	CCSGG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	30, 496
BccI	CCATC	1 cut(s)	422
BclI	TGATCA	2 cut(s)	298, 439
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	2 cut(s)	497, 706
BfrI	CTTAAG	1 cut(s)	250
BisI	GCNGC	2 cut(s)	19, 485
BlsI	GCNGC	2 cut(s)	20, 486
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	24, 44, 103
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	2 cut(s)	471, 561
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	650
BsaHI	GRCGYC	1 cut(s)	694
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 661
Bse21I	CCTNAGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	650
BseAI	TCCGGA	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	99, 552
BseJI	GATNNNNATC	1 cut(s)	650
BseLI	CCNNNNNNNGG	2 cut(s)	111, 661
BseMII	CTCAG	2 cut(s)	66, 461
BseXI	GCAGC	2 cut(s)	30, 496
BshFI	GGCC	3 cut(s)	25, 104, 313
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	538, 564
BslI	CCNNNNNNNGG	2 cut(s)	111, 661
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	3 cut(s)	25, 104, 313
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	298, 337, 439
BspACI	CCGC	4 cut(s)	16, 27, 80, 106
BspANI	GGCC	3 cut(s)	25, 104, 313
BspCNI	CTCAG	2 cut(s)	65, 460
BspEI	TCCGGA	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	3 cut(s)	298, 337, 439
BssNI	GRCGYC	1 cut(s)	694
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	694
BstAFI	CTTAAG	1 cut(s)	250
BstC8I	GCNNGC	3 cut(s)	23, 27, 106
BstDEI	CTNAG	4 cut(s)	52, 110, 447, 616
BstF5I	GGATG	2 cut(s)	99, 552
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	3 cut(s)	301, 340, 442
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	3 cut(s)	298, 337, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	562
BstV1I	GCAGC	2 cut(s)	30, 496
BstV2I	GAAGAC	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	25, 104, 313
BtsCI	GGATG	2 cut(s)	99, 552
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	3 cut(s)	23, 27, 106
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	3 cut(s)	24, 44, 103
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	3 cut(s)	302, 369, 547
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	4 cut(s)	52, 110, 447, 616
DpnI	GATC	3 cut(s)	300, 339, 441
DpnII	GATC	3 cut(s)	298, 337, 439
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	305, 372, 550
FatI	CATG	3 cut(s)	301, 368, 546
FauI	CCCGC	3 cut(s)	34, 87, 113
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	2 cut(s)	298, 439
Fnu4HI	GCNGC	2 cut(s)	19, 485
FokI	GGATG	2 cut(s)	106, 539
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	19, 485
FspBI	CTAG	2 cut(s)	497, 706
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	19, 485
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	25, 104, 313
HapII	CCGG	2 cut(s)	538, 564
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	694
Hin1II	CATG	3 cut(s)	305, 372, 550
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	270, 397
HpaII	CCGG	2 cut(s)	538, 564
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	1 cut(s)	685
Hpy188III	TCNNGA	3 cut(s)	478, 497, 538
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	5 cut(s)	204, 217, 566, 616, 661
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	151, 368, 484, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	4 cut(s)	52, 110, 447, 616
Hsp92I	GRCGYC	1 cut(s)	694
Hsp92II	CATG	3 cut(s)	305, 372, 550
HspAI	GCGC	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	537
Ksp22I	TGATCA	2 cut(s)	298, 439
Kzo9I	GATC	3 cut(s)	298, 337, 439
LpnPI	CCDG	9 cut(s)	7, 51, 122, 230, 271, 491, 551, 577, 676
Lsp1109I	GCAGC	2 cut(s)	30, 496
LweI	GCATC	2 cut(s)	471, 561
MaeI	CTAG	2 cut(s)	497, 706
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	3 cut(s)	300, 339, 441
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	3 cut(s)	298, 337, 439
MboII	GAAGA	4 cut(s)	251, 365, 428, 462
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	6 cut(s)	31, 152, 279, 356, 492, 500
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	6 cut(s)	21, 108, 254, 330, 412, 708
MroI	TCCGGA	1 cut(s)	537
MseI	TTAA	3 cut(s)	213, 221, 251
MspA1I	CMGCKG	1 cut(s)	21
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	2 cut(s)	538, 564
MspR9I	CCNGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	564
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	3 cut(s)	298, 337, 439
NlaIII	CATG	3 cut(s)	305, 372, 550
NlaIV	GGNNCC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	20, 486
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PsiI	TTATAA	2 cut(s)	581, 650
Psp124BI	GAGCTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	3 cut(s)	24, 44, 103
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	213, 221, 251
SatI	GCNGC	2 cut(s)	19, 485
Sau3AI	GATC	3 cut(s)	298, 337, 439
Sau96I	GGNCC	3 cut(s)	24, 44, 103
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	9 cut(s)	23, 119, 132, 141, 162, 219, 290, 453, 489
SfaNI	GCATC	2 cut(s)	471, 561
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	6 cut(s)	31, 152, 279, 356, 492, 500
SsiI	CCGC	4 cut(s)	16, 27, 80, 106
SspMI	CTAG	2 cut(s)	497, 706
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	460
TasI	AATT	6 cut(s)	31, 152, 279, 356, 492, 500
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	213, 221, 251
Tru9I	TTAA	3 cut(s)	213, 221, 251
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	2 cut(s)	18, 484
TspDTI	ATGAA	6 cut(s)	110, 180, 252, 262, 280, 374
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	279
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	2 cut(s)	497, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.