Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003071.1

Orthogroup ID

OG0011861

Physical Location & Seq

Genomic Coordinates Reverse (-)

61203 .. 62949

Gene Structure 1747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtctaatcccatggaagagaagaacattatggaatctccccctatctctcccctaagcagtgaaccagaaccgaacaatagtaaacagttggtggggtgtcttccacagtctgaccttatcgccaatgagttggtggagtttcctccacaatctgaccctatcgccgatgagttggtggagtcttctctgcagtctgatcccattgccaatgagttgttggagtctccttcacagtctgagtctgaccccatcgccgatgagaacaatgaagcactatcagctgaaggcggtcaatcggaggcaggtgaagtgatgatgacacctaagaagaagagggggagacccaggaattatgaggtcaatgaagaaatggtctctgatgttccggcttccaactcagagggctcctctaagaaagcaaaagaccaccccaaaggctcaggcaataaattgcaatgccccgctgccgatgaaactggtggagttggaaataacttcatccctttcgcagtgactgtgcagactggggaggtaatgctagaaagacctgtgagacattttcttgggcaatatttgatatgctgccgctctactttgtcgatcattcctttcgcagtgactgtgcagactggggaggtaatgctagaaagacctgaccttgttcataaaatatgggtcatggcacagagggaccatcaatcaatttgcattctttcggctactggtgctgtttctaaacctgtcatacgacctaatgctgctgtagggtatgcaaaatacgaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook DUF296

Protein Analysis

263

Amino Acids

28.45

Weight (kDa)

4.68

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45850 AT2G45850 AT2G45850
fragaria_vesca	FvH4_3g30120
prunus_persica	Prupe.6G117900_v2.0.a1
rosa_laevigata	RLG00000013182 RLG00000034994 RLG00000034998
rosa_multiflora	Rmu_sc0003071.1_g000021 Rmu_sc0003989.1_g000016
rosa_roxburghii	Rroxscaffold_1G00024700 Rroxscaffold_1G00024710
rosa_rugosa	Rorug05G0293500
rosa_samantha	Rh5AG363500 Rh5BG375500 Rh5CG397200 Rh5CG397600 Rh5DG388700
rosa_wichuraiana	Rw5G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	591
AciI	CCGC	3 cut(s)	291, 465, 589
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
Alw26I	GTCTC	4 cut(s)	231, 337, 382, 550
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	2 cut(s)	518, 623
ApeKI	GCWGC	3 cut(s)	467, 585, 761
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	410
BbsI	GAAGAC	2 cut(s)	95, 177
BbvI	GCAGC	3 cut(s)	454, 572, 748
BccI	CCATC	2 cut(s)	260, 705
BciT130I	CCWGG	1 cut(s)	349
BcoDI	GTCTC	4 cut(s)	231, 337, 382, 550
BfaI	CTAG	2 cut(s)	542, 647
BfmI	CTRYAG	2 cut(s)	191, 765
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	4 cut(s)	468, 586, 589, 762
BlsI	GCNGC	4 cut(s)	469, 587, 590, 763
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	2 cut(s)	409, 695
BmrFI	CCNGG	1 cut(s)	349
BmrI	ACTGGG	2 cut(s)	537, 642
BmuI	ACTGGG	2 cut(s)	537, 642
BpiI	GAAGAC	2 cut(s)	95, 177
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
Bpu10I	CCTNAGC	2 cut(s)	56, 442
BsaI	GGTCTC	2 cut(s)	337, 382
BsaJI	CCNNGG	2 cut(s)	12, 347
Bse1I	ACTGG	4 cut(s)	484, 532, 637, 730
Bse3DI	GCAATG	2 cut(s)	204, 464
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	2 cut(s)	12, 347
BseGI	GGATG	1 cut(s)	501
BseMI	GCAATG	2 cut(s)	204, 464
BseMII	CTCAG	3 cut(s)	231, 414, 456
BseNI	ACTGG	4 cut(s)	484, 532, 637, 730
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	454, 572, 748
BsgI	GTGCAG	2 cut(s)	542, 647
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	707
BsmAI	GTCTC	4 cut(s)	231, 337, 382, 550
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	711
Bso31I	GGTCTC	2 cut(s)	337, 382
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	199, 603
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	3 cut(s)	291, 465, 589
BspCNI	CTCAG	3 cut(s)	232, 413, 455
BspLI	GGNNCC	2 cut(s)	409, 695
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	194
BspTNI	GGTCTC	2 cut(s)	337, 382
BsrBI	CCGCTC	1 cut(s)	591
BsrDI	GCAATG	2 cut(s)	204, 464
BsrI	ACTGG	4 cut(s)	484, 532, 637, 730
BssECI	CCNNGG	2 cut(s)	12, 347
BssMI	GATC	2 cut(s)	199, 603
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	5 cut(s)	90, 111, 237, 520, 625
Bst6I	CTCTTC	2 cut(s)	12, 329
BstDEI	CTNAG	6 cut(s)	56, 240, 327, 400, 414, 442
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	501
BstKTI	GATC	2 cut(s)	202, 606
BstMAI	GTCTC	4 cut(s)	231, 337, 382, 550
BstMBI	GATC	2 cut(s)	199, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 728
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	2 cut(s)	191, 765
BstV1I	GCAGC	3 cut(s)	454, 572, 748
BstV2I	GAAGAC	2 cut(s)	95, 177
BstXI	CCANNNNNNTGG	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	501
BtsI	GCAGTG	3 cut(s)	67, 519, 624
BtsIMutI	CAGTG	3 cut(s)	67, 519, 624
BveI	ACCTGC	1 cut(s)	296
CaiI	CAGNNNCTG	2 cut(s)	518, 623
Cfr13I	GGNCC	1 cut(s)	694
CviAII	CATG	2 cut(s)	13, 682
CviJI	RGCY	5 cut(s)	284, 392, 408, 441, 722
CviKI_1	RGCY	5 cut(s)	284, 392, 408, 441, 722
DdeI	CTNAG	6 cut(s)	56, 240, 327, 400, 414, 442
DpnI	GATC	2 cut(s)	201, 605
DpnII	GATC	2 cut(s)	199, 603
Eam1104I	CTCTTC	2 cut(s)	12, 329
EarI	CTCTTC	2 cut(s)	12, 329
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	410
Eco31I	GGTCTC	2 cut(s)	337, 382
Eco47I	GGWCC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	16, 685
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	2 cut(s)	12, 681
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	468, 586, 589, 762
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	4 cut(s)	468, 586, 589, 762
FspBI	CTAG	2 cut(s)	542, 647
GluI	GCNGC	4 cut(s)	468, 586, 589, 762
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	2 cut(s)	16, 685
HinfI	GANTC	4 cut(s)	35, 182, 224, 242
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	65, 86
Hpy188I	TCNGA	8 cut(s)	115, 157, 199, 241, 247, 301, 382, 403
Hpy8I	GTNNAC	2 cut(s)	65, 86
HpyAV	CCTTC	2 cut(s)	240, 281
HpyCH4III	ACNGT	5 cut(s)	90, 111, 237, 520, 625
HpyCH4V	TGCA	6 cut(s)	193, 457, 523, 628, 711, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 728
HpyF3I	CTNAG	6 cut(s)	56, 240, 327, 400, 414, 442
Hsp92II	CATG	2 cut(s)	16, 685
Kzo9I	GATC	2 cut(s)	199, 603
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	3 cut(s)	454, 572, 748
MaeI	CTAG	2 cut(s)	542, 647
MaeIII	GTNAC	2 cut(s)	514, 619
MalI	GATC	2 cut(s)	201, 605
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	2 cut(s)	199, 603
MboII	GAAGA	7 cut(s)	29, 34, 95, 177, 343, 346, 380
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	3 cut(s)	352, 452, 705
MlyI	GAGTC	3 cut(s)	191, 233, 251
MmeI	TCCRAC	3 cut(s)	201, 420, 469
MspA1I	CMGCKG	2 cut(s)	284, 467
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	281, 728
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	199, 603
NlaIII	CATG	2 cut(s)	16, 685
NlaIV	GGNNCC	2 cut(s)	409, 695
NmuCI	GTSAC	2 cut(s)	514, 619
PaqCI	CACCTGC	1 cut(s)	296
PctI	GAATGC	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	469, 587, 590, 763
PleI	GAGTC	3 cut(s)	190, 232, 250
PpsI	GAGTC	3 cut(s)	190, 232, 250
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	409, 695
PspPI	GGNCC	1 cut(s)	694
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	2 cut(s)	518, 623
PvuII	CAGCTG	1 cut(s)	284
SatI	GCNGC	4 cut(s)	468, 586, 589, 762
Sau3AI	GATC	2 cut(s)	199, 603
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	3 cut(s)	191, 233, 251
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	410
SfcI	CTRYAG	2 cut(s)	191, 765
SinI	GGWCC	1 cut(s)	694
Sse9I	AATT	3 cut(s)	352, 452, 705
SsiI	CCGC	3 cut(s)	291, 465, 589
SspI	AATATT	1 cut(s)	575
SspMI	CTAG	2 cut(s)	542, 647
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	5 cut(s)	90, 111, 237, 520, 625
TaqI	TCGA	1 cut(s)	602
TasI	AATT	3 cut(s)	352, 452, 705
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	3 cut(s)	67, 519, 624
TseFI	GTSAC	2 cut(s)	514, 619
TseI	GCWGC	3 cut(s)	467, 585, 761
Tsp45I	GTSAC	2 cut(s)	514, 619
TspDTI	ATGAA	5 cut(s)	285, 381, 489, 490, 656
TspRI	CASTG	3 cut(s)	67, 519, 624
VpaK11BI	GGWCC	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	2 cut(s)	133, 217
XspI	CTAG	2 cut(s)	542, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.