Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003480.1

Orthogroup ID

OG0013634

Physical Location & Seq

Genomic Coordinates Reverse (-)

74861 .. 75765

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003480.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ctgtgctacggtgaccagtggccggcgcggtctccggcgaccggtgaccggactccggcgaacggtgaccggattccagaatccggctattattgcccctcaaacttcaaacccaatgaaaggcccaatctttcgaaaccccattttccttcactccctgatgtcaccagcaacagtgaaaaagcaaagacctttgagaatcttccgaagctgccgttgatttcagccaccaacattggagtttggtacgaagaagctgaagatttggaaggcaaagtggtcgggaagatgaagaaagccgaggcaaggagtgacaaggagtggcgatggtcgggatcgccgatcaatcgaacggcgaggaggtggagatcggggggagagagagagagtttgggaaggagagagagactgataggagatggatgggttttaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

145

Amino Acids

16.39

Weight (kDa)

9.17

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07940 FvH4_4g20380
rosa_chinensis	RchiOBHm_Chr5g0010491 RchiOBHm_Chr5g0010591
rosa_multiflora	Rmu_sc0000685.1_g000021 Rmu_sc0001287.1_g000008 Rmu_sc0003480.1_g000017 Rmu_sc0015162.1_g000001 Rmu_sc0015466.1_g000005
rosa_roxburghii	Rroxscaffold_1G00000820 Rroxscaffold_4G00325250
rosa_samantha	Rh5AG082100 Rh5AG082500 Rh5AG082600 Rh5CG090100 Rh5CG090400 Rh5DG077300 Rh5DG078000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	8 cut(s)	22, 41, 48, 55, 62, 83, 120, 306
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	2 cut(s)	211, 257
AluI	AGCT	2 cut(s)	211, 257
Alw26I	GTCTC	2 cut(s)	36, 400
AlwI	GGATC	1 cut(s)	343
AoxI	GGCC	2 cut(s)	20, 122
ApeKI	GCWGC	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	23, 56, 77, 157
AsuII	TTCGAA	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	3 cut(s)	321, 413, 417
BceAI	ACGGC	2 cut(s)	199, 369
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BcoDI	GTCTC	2 cut(s)	36, 400
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	3 cut(s)	41, 48, 69
Bsc4I	CCNNNNNNNGG	8 cut(s)	22, 41, 48, 55, 62, 83, 120, 306
Bse118I	RCCGGY	2 cut(s)	22, 41
Bse1I	ACTGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	428
BseLI	CCNNNNNNNGG	8 cut(s)	22, 41, 48, 55, 62, 83, 120, 306
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	373
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	22, 124
BshTI	ACCGGT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	7 cut(s)	23, 35, 42, 49, 56, 70, 84
BslI	CCNNNNNNNGG	8 cut(s)	22, 41, 48, 55, 62, 83, 120, 306
BsmAI	GTCTC	2 cut(s)	36, 400
BsnI	GGCC	2 cut(s)	22, 124
Bso31I	GGTCTC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	335, 342, 368
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	22, 124
BspFNI	CGCG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	36
BsrFI	RCCGGY	2 cut(s)	22, 41
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	2 cut(s)	22, 41
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	335, 342, 368
Bst4CI	ACNGT	3 cut(s)	11, 65, 176
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	24
BstEII	GGTNACC	3 cut(s)	11, 44, 65
BstF5I	GGATG	1 cut(s)	428
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	338, 345, 371
BstMAI	GTCTC	2 cut(s)	36, 400
BstMBI	GATC	3 cut(s)	335, 342, 368
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstPI	GGTNACC	3 cut(s)	11, 44, 65
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	22, 124
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	23, 181
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	2 cut(s)	22, 41
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	41
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviJI	RGCY	7 cut(s)	22, 87, 124, 211, 227, 257, 299
CviKI_1	RGCY	7 cut(s)	22, 87, 124, 211, 227, 257, 299
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	3 cut(s)	337, 344, 370
DpnII	GATC	3 cut(s)	335, 342, 368
EaeI	YGGCCR	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	279
Eco91I	GGTNACC	3 cut(s)	11, 44, 65
EcoO65I	GGTNACC	3 cut(s)	11, 44, 65
Fnu4HI	GCNGC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	212
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	22, 124
HapII	CCGG	7 cut(s)	23, 35, 42, 49, 56, 70, 84
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	4 cut(s)	52, 73, 80, 199
HpaII	CCGG	7 cut(s)	23, 35, 42, 49, 56, 70, 84
HphI	GGTGA	4 cut(s)	23, 56, 77, 157
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	77, 283, 333
HpyAV	CCTTC	3 cut(s)	159, 263, 390
HpyCH4III	ACNGT	3 cut(s)	11, 65, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HspAI	GCGC	1 cut(s)	26
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	335, 342, 368
Lsp1109I	GCAGC	1 cut(s)	198
MaeIII	GTNAC	5 cut(s)	11, 44, 65, 163, 311
MalI	GATC	3 cut(s)	337, 344, 370
MboI	GATC	3 cut(s)	335, 342, 368
MboII	GAAGA	5 cut(s)	194, 263, 272, 298, 304
MluCI	AATT	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	109, 295, 351, 354
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	2 cut(s)	431, 436
MspI	CCGG	7 cut(s)	23, 35, 42, 49, 56, 70, 84
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	93
NaeI	GCCGGC	1 cut(s)	24
NdeII	GATC	3 cut(s)	335, 342, 368
NgoMIV	GCCGGC	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	5 cut(s)	11, 44, 65, 163, 311
NspV	TTCGAA	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	73, 80, 199
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspEI	GGTNACC	3 cut(s)	11, 44, 65
PspPI	GGNCC	1 cut(s)	123
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	431, 436
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	335, 342, 368
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	46
SetI	ASST	4 cut(s)	194, 213, 259, 365
SfuI	TTCGAA	1 cut(s)	134
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	1 cut(s)	28
TaaI	ACNGT	3 cut(s)	11, 65, 176
TaqI	TCGA	2 cut(s)	134, 349
TasI	AATT	1 cut(s)	432
TfiI	GAWTC	3 cut(s)	73, 80, 199
Tru1I	TTAA	2 cut(s)	431, 436
Tru9I	TTAA	2 cut(s)	431, 436
TscAI	CASTG	2 cut(s)	23, 181
TseFI	GTSAC	5 cut(s)	11, 44, 65, 163, 311
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	5 cut(s)	11, 44, 65, 163, 311
TspDTI	ATGAA	2 cut(s)	132, 305
TspRI	CASTG	2 cut(s)	23, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.