Rh5AG082100

Uncharacterised protein family UPF0052

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013634
Physical Location & Seq
Reverse (-)
7059418 .. 7060837
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG082100.1

Sequence Viewer

Length: 315 bp
ATGTCTCATTTCTTAGGCATTAATTGGCATTGGGAAGATTATATGTTCAAGGCCAGGTCCTGCCGCAAGGTACTTTTGTTAAATGGTACCCATGATCGAGAGACAAGTGGTTTCTCAGCTTCTTGCTTTGTAACTGCTATTAGAGATGCACCAAGTCGAACATACGGATGCCCTCATAACTGGCTTAAGAACCTTATTGTTGTTGACTCTGTACATGATCCAAAAGTGGTTGTGGTATTTGACCCCAAGTCGTTAATACAAGCCCTTGATGATTTGGTAGGCAGACACTTGACTACAAATGTTAAGGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0052

Protein Analysis

104

Amino Acids

11.82

Weight (kDa)

8.54

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 212
AfaI GTAC 3 cut(s) 72, 88, 213
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 49
AhdI GACNNNNNGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 9, 95
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 60
AoxI GGCC 1 cut(s) 51
AseI ATTAAT 1 cut(s) 21
Asp718I GGTACC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 57
AvaII GGWCC 1 cut(s) 57
BaeI ACNNNNGTAYC 2 cut(s) 62, 95
BanI GGYRCC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 9, 95
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 57
BmeRI GACNNNNNGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 2 cut(s) 136, 158
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 185
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 9, 95
BsnI GGCC 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 2 cut(s) 94, 217
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 86
BspTI CTTAAG 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 185
BssMI GATC 2 cut(s) 94, 217
Bst2UI CCWGG 1 cut(s) 55
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 13, 115
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 2 cut(s) 97, 220
BstMAI GTCTC 2 cut(s) 9, 95
BstMBI GATC 2 cut(s) 94, 217
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 3 cut(s) 71, 87, 212
CviAII CATG 2 cut(s) 92, 215
CviJI RGCY 4 cut(s) 53, 119, 184, 263
CviKI_1 RGCY 4 cut(s) 53, 119, 184, 263
CviQI GTAC 3 cut(s) 71, 87, 212
DdeI CTNAG 2 cut(s) 13, 115
DpnI GATC 2 cut(s) 96, 219
DpnII GATC 2 cut(s) 94, 217
DriI GACNNNNNGTC 1 cut(s) 247
Eam1105I GACNNNNNGTC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 2 cut(s) 95, 218
FaiI YATR 6 cut(s) 42, 44, 93, 163, 177, 216
FatI CATG 2 cut(s) 91, 214
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 2 cut(s) 95, 218
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 13, 115
Hsp92II CATG 2 cut(s) 95, 218
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 94, 217
LpnPI CCDG 4 cut(s) 40, 67, 73, 166
LweI GCATC 2 cut(s) 136, 158
MaeIII GTNAC 1 cut(s) 130
MalI GATC 2 cut(s) 96, 219
MboI GATC 2 cut(s) 94, 217
MboII GAAGA 1 cut(s) 47
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 1 cut(s) 183
MseI TTAA 5 cut(s) 21, 80, 186, 254, 303
MslI CAYNNNNRTG 1 cut(s) 166
MspCI CTTAAG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
NdeII GATC 2 cut(s) 94, 217
NlaIII CATG 2 cut(s) 95, 218
NlaIV GGNNCC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 57
PspPPI RGGWCCY 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 60
RsaI GTAC 3 cut(s) 72, 88, 213
RsaNI GTAC 3 cut(s) 71, 87, 212
RseI CAYNNNNRTG 1 cut(s) 166
SaqAI TTAA 5 cut(s) 21, 80, 186, 254, 303
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 94, 217
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 55
SetI ASST 5 cut(s) 59, 72, 121, 195, 309
SfaNI GCATC 2 cut(s) 136, 158
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 22
SsiI CCGC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 53
TaqI TCGA 2 cut(s) 97, 157
TasI AATT 1 cut(s) 22
TatI WGTACW 1 cut(s) 211
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 5 cut(s) 21, 80, 186, 254, 303
Tru9I TTAA 5 cut(s) 21, 80, 186, 254, 303
TspGWI ACGGA 1 cut(s) 180
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.