Uncharacterised protein family UPF0052
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g07940 FvH4_4g20380 |
| rosa_chinensis | RchiOBHm_Chr5g0010491 RchiOBHm_Chr5g0010591 |
| rosa_multiflora | Rmu_sc0000685.1_g000021 Rmu_sc0001287.1_g000008 Rmu_sc0003480.1_g000017 Rmu_sc0015162.1_g000001 Rmu_sc0015466.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00000820 Rroxscaffold_4G00325250 |
| rosa_samantha | Rh5AG082100 Rh5AG082500 Rh5AG082600 Rh5CG090100 Rh5CG090400 Rh5DG077300 Rh5DG078000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 141 |
| AcuI | CTGAAG | 1 cut(s) | 12 |
| AfaI | GTAC | 4 cut(s) | 177, 184, 250, 279 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 258 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AgsI | TTSAA | 3 cut(s) | 208, 213, 218 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 78, 110 |
| AluBI | AGCT | 4 cut(s) | 24, 32, 125, 139 |
| AluI | AGCT | 4 cut(s) | 24, 32, 125, 139 |
| AlwI | GGATC | 1 cut(s) | 141 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 35 |
| AoxI | GGCC | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 25 |
| AspS9I | GGNCC | 1 cut(s) | 82 |
| BbsI | GAAGAC | 1 cut(s) | 97 |
| BccI | CCATC | 2 cut(s) | 124, 205 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 27, 61 |
| BmgT120I | GGNCC | 1 cut(s) | 82 |
| BmsI | GCATC | 2 cut(s) | 232, 262 |
| BpiI | GAAGAC | 1 cut(s) | 97 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 258 |
| Bse1I | ACTGG | 1 cut(s) | 95 |
| BseGI | GGATG | 1 cut(s) | 267 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 258 |
| BseNI | ACTGG | 1 cut(s) | 95 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| BsgI | GTGCAG | 1 cut(s) | 21 |
| BshFI | GGCC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 258 |
| BsnI | GGCC | 1 cut(s) | 84 |
| Bsp143I | GATC | 2 cut(s) | 133, 234 |
| BspANI | GGCC | 1 cut(s) | 84 |
| BspHI | TCATGA | 1 cut(s) | 97 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 1 cut(s) | 31 |
| BsrI | ACTGG | 1 cut(s) | 95 |
| BssMI | GATC | 2 cut(s) | 133, 234 |
| Bst4CI | ACNGT | 1 cut(s) | 204 |
| Bst6I | CTCTTC | 2 cut(s) | 31, 49 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 256 |
| BstF5I | GGATG | 1 cut(s) | 267 |
| BstKTI | GATC | 2 cut(s) | 136, 237 |
| BstMBI | GATC | 2 cut(s) | 133, 234 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstV2I | GAAGAC | 1 cut(s) | 97 |
| BsuRI | GGCC | 1 cut(s) | 84 |
| BtsCI | GGATG | 1 cut(s) | 267 |
| BtsIMutI | CAGTG | 1 cut(s) | 200 |
| CaiI | CAGNNNCTG | 1 cut(s) | 35 |
| CciI | TCATGA | 1 cut(s) | 97 |
| Cfr13I | GGNCC | 1 cut(s) | 82 |
| Csp6I | GTAC | 4 cut(s) | 176, 183, 249, 278 |
| CviAII | CATG | 3 cut(s) | 70, 98, 169 |
| CviJI | RGCY | 5 cut(s) | 24, 32, 84, 125, 139 |
| CviKI_1 | RGCY | 5 cut(s) | 24, 32, 84, 125, 139 |
| CviQI | GTAC | 4 cut(s) | 176, 183, 249, 278 |
| DpnI | GATC | 2 cut(s) | 135, 236 |
| DpnII | GATC | 2 cut(s) | 133, 234 |
| Eam1104I | CTCTTC | 2 cut(s) | 31, 49 |
| EarI | CTCTTC | 2 cut(s) | 31, 49 |
| Eco57I | CTGAAG | 1 cut(s) | 12 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 256 |
| FaeI | CATG | 3 cut(s) | 73, 101, 172 |
| FaiI | YATR | 5 cut(s) | 71, 99, 142, 165, 170 |
| FatI | CATG | 3 cut(s) | 69, 97, 168 |
| FokI | GGATG | 1 cut(s) | 274 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| HaeIII | GGCC | 1 cut(s) | 84 |
| Hin1II | CATG | 3 cut(s) | 73, 101, 172 |
| HinfI | GANTC | 1 cut(s) | 283 |
| Hpy166II | GTNNAC | 1 cut(s) | 176 |
| Hpy188I | TCNGA | 1 cut(s) | 239 |
| Hpy188III | TCNNGA | 1 cut(s) | 98 |
| Hpy8I | GTNNAC | 1 cut(s) | 176 |
| HpyCH4III | ACNGT | 1 cut(s) | 204 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 156, 223 |
| Hsp92II | CATG | 3 cut(s) | 73, 101, 172 |
| Kzo9I | GATC | 2 cut(s) | 133, 234 |
| LguI | GCTCTTC | 1 cut(s) | 31 |
| LmnI | GCTCC | 2 cut(s) | 37, 118 |
| LpnPI | CCDG | 5 cut(s) | 48, 76, 123, 135, 244 |
| LweI | GCATC | 2 cut(s) | 232, 262 |
| MalI | GATC | 2 cut(s) | 135, 236 |
| MboI | GATC | 2 cut(s) | 133, 234 |
| MboII | GAAGA | 3 cut(s) | 18, 36, 97 |
| MfeI | CAATTG | 1 cut(s) | 213 |
| MluCI | AATT | 2 cut(s) | 208, 213 |
| MnlI | CCTC | 5 cut(s) | 42, 51, 73, 94, 262 |
| MroXI | GAANNNNTTC | 1 cut(s) | 25 |
| MspA1I | CMGCKG | 1 cut(s) | 125 |
| MunI | CAATTG | 1 cut(s) | 213 |
| NdeII | GATC | 2 cut(s) | 133, 234 |
| NlaIII | CATG | 3 cut(s) | 73, 101, 172 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PagI | TCATGA | 1 cut(s) | 97 |
| PciI | ACATGT | 1 cut(s) | 69 |
| PciSI | GCTCTTC | 1 cut(s) | 31 |
| PdmI | GAANNNNTTC | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 283 |
| PscI | ACATGT | 1 cut(s) | 69 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspPI | GGNCC | 1 cut(s) | 82 |
| PstNI | CAGNNNCTG | 1 cut(s) | 35 |
| PvuII | CAGCTG | 1 cut(s) | 125 |
| RsaI | GTAC | 4 cut(s) | 177, 184, 250, 279 |
| RsaNI | GTAC | 4 cut(s) | 176, 183, 249, 278 |
| SapI | GCTCTTC | 1 cut(s) | 31 |
| Sau3AI | GATC | 2 cut(s) | 133, 234 |
| Sau96I | GGNCC | 1 cut(s) | 82 |
| SetI | ASST | 6 cut(s) | 26, 34, 105, 127, 141, 254 |
| SfaNI | GCATC | 2 cut(s) | 232, 262 |
| Sse9I | AATT | 2 cut(s) | 208, 213 |
| TaaI | ACNGT | 1 cut(s) | 204 |
| TaqI | TCGA | 1 cut(s) | 47 |
| TasI | AATT | 2 cut(s) | 208, 213 |
| TatI | WGTACW | 3 cut(s) | 175, 182, 277 |
| TfiI | GAWTC | 1 cut(s) | 283 |
| TscAI | CASTG | 1 cut(s) | 207 |
| TspDTI | ATGAA | 1 cut(s) | 86 |
| TspRI | CASTG | 1 cut(s) | 207 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 256 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 25 |