Rh5CG090400

Uncharacterised protein family UPF0052

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013634
Physical Location & Seq
Reverse (-)
7150674 .. 7154406
3733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG090400.1

Sequence Viewer

Length: 873 bp
ATGATTAAGCCTTGTTTTACTAATCAGATTCTCCGTCGATCTGATGAATCGTTTTGCTTCAGTAATGGCAGCATTGGGAATTTCTTCTTTGCAGGAGCACGTGTATTTTTTCGGTCTTTGGATGCTGCAATATTTTTGTTTTCTCGAGTGTCAGATATCCCATCAGAAAGTCTGGTTCTTCCAGTGATTTCTACTAATGACAGGCTTACATTAGGATGTGAATTATCGGATGGAACTATAATACGAGGGCAGAATGAAATTTCTCATCCAACCAAGGGATATATGGCACTTGTCAATAAGGGAAACTCTTCAGCTCCTGCACTCTCTTCGAGGATAAAGAGGGTATTCTACATGTCAAGTGAGGGCCAAAACTTGCTTCATGAGGTCTTCCCTGCTCCAAACCCAGCTGTGATGGATCAGCTACGTAATGTGGATTGCATTGTTTATGCCATGGGTTCTCTCTTTACTTCCGTTTGCCCATCACTGGTGTTAATTGGCATTGGGGAGATTATATCTTCAAGGTCCTGCCCCAAGGTACTTTTGTTAAACGGTACCCATGATCGAGAGACAAGTGGCTTCTCAGCTTCTTGCTTTGTAACTGCTATTACAGATGCACTAAATCGAACATATGGAGCCCCTCATAACTGTCTCAAAAACCTTCCCAGTCATTATATCAATACCCTCTTGGTGCCCAAAGATGGTGAGATACCTGTTAATGTTCAATGCTTAGCTGACCAAGGAATTTTTGAAGTGATTGTTGTTGACTCTGTACATGATCCAAAAGTGGGTGTGGTATTTGACCCCAAGTCGTTAATACAAGCCCTTGATGATTTGATAGGCAGACACATGCCTACAAATGTTACAGTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0052

Protein Analysis

290

Amino Acids

31.55

Weight (kDa)

6.15

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CofD PF01933 21 - 237 3.3e-23 2-phospho-L-lactate transferase CofD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 2 cut(s) 551, 688
AclWI GGATC 2 cut(s) 423, 770
AcsI RAATTY 3 cut(s) 79, 258, 741
AcuI CTGAAG 2 cut(s) 43, 294
AcvI CACGTG 1 cut(s) 101
AfaI GTAC 3 cut(s) 537, 553, 771
AfiI CCNNNNNNNGG 4 cut(s) 275, 484, 698, 785
AflIII ACRYGT 2 cut(s) 100, 351
AgsI TTSAA 3 cut(s) 519, 722, 749
AhdI GACNNNNNGTC 1 cut(s) 805
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AluBI AGCT 5 cut(s) 314, 407, 421, 584, 731
AluI AGCT 5 cut(s) 314, 407, 421, 584, 731
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 560, 653
AlwI GGATC 2 cut(s) 423, 770
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 69, 125
ApoI RAATTY 3 cut(s) 79, 258, 741
Asp700I GAANNNNTTC 2 cut(s) 83, 307
Asp718I GGTACC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 364, 522
AsuHPI GGTGA 1 cut(s) 713
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 522
BaeGI GKGCMC 1 cut(s) 693
BaeI ACNNNNGTAYC 2 cut(s) 527, 560
BanI GGYRCC 2 cut(s) 551, 688
BanII GRGCYC 1 cut(s) 637
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 81, 112
BccI CCATC 5 cut(s) 169, 224, 406, 487, 692
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BcoDI GTCTC 2 cut(s) 560, 653
BisI GCNGC 2 cut(s) 70, 126
BlpI GCTNAGC 1 cut(s) 727
BlsI GCNGC 2 cut(s) 71, 127
Bme18I GGWCC 1 cut(s) 522
BmeRI GACNNNNNGTC 1 cut(s) 805
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 2 cut(s) 364, 522
BmiI GGNNCC 3 cut(s) 553, 634, 690
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 2 cut(s) 112, 601
BmuI ACTGGG 1 cut(s) 657
BpiI GAAGAC 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 727
BsaAI YACGTR 2 cut(s) 101, 425
BsaJI CCNNGG 4 cut(s) 273, 450, 531, 736
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 484, 698, 785
Bse1I ACTGG 3 cut(s) 182, 489, 663
BseDI CCNNGG 4 cut(s) 273, 450, 531, 736
BseGI GGATG 4 cut(s) 127, 221, 235, 265
BseLI CCNNNNNNNGG 4 cut(s) 275, 484, 698, 785
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 3 cut(s) 182, 489, 663
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 2 cut(s) 81, 112
BseYI CCCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 366
BshNI GGYRCC 2 cut(s) 551, 688
BsiHKAI GWGCWC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 144
BslI CCNNNNNNNGG 4 cut(s) 275, 484, 698, 785
BsmAI GTCTC 2 cut(s) 560, 653
BsnI GGCC 1 cut(s) 366
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 100, 637, 693
Bsp1407I TGTACA 1 cut(s) 769
Bsp143I GATC 4 cut(s) 38, 415, 559, 775
Bsp1720I GCTNAGC 1 cut(s) 727
Bsp19I CCATGG 1 cut(s) 450
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 593
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 553, 634, 690
BspPI GGATC 2 cut(s) 423, 770
BspT107I GGYRCC 2 cut(s) 551, 688
BsrGI TGTACA 1 cut(s) 769
BsrI ACTGG 3 cut(s) 182, 489, 663
BssECI CCNNGG 4 cut(s) 273, 450, 531, 736
BssMI GATC 4 cut(s) 38, 415, 559, 775
BssT1I CCWWGG 4 cut(s) 273, 450, 531, 736
Bst4CI ACNGT 3 cut(s) 551, 647, 865
Bst6I CTCTTC 2 cut(s) 313, 331
BstAUI TGTACA 1 cut(s) 769
BstBAI YACGTR 2 cut(s) 101, 425
BstDEI CTNAG 2 cut(s) 580, 727
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 4 cut(s) 127, 221, 235, 265
BstKTI GATC 4 cut(s) 41, 418, 562, 778
BstMAI GTCTC 2 cut(s) 560, 653
BstMBI GATC 4 cut(s) 38, 415, 559, 775
BstNSI RCATGY 2 cut(s) 355, 850
BstSLI GKGCMC 1 cut(s) 693
BstSNI TACGTA 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 81, 112
BstV2I GAAGAC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 4 cut(s) 127, 221, 235, 265
BtsIMutI CAGTG 3 cut(s) 189, 482, 870
CaiI CAGNNNCTG 1 cut(s) 317
CciI TCATGA 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 364, 522
Csp6I GTAC 3 cut(s) 536, 552, 770
CviAII CATG 6 cut(s) 352, 380, 451, 557, 773, 847
CviQI GTAC 3 cut(s) 536, 552, 770
DdeI CTNAG 2 cut(s) 580, 727
DpnI GATC 4 cut(s) 40, 417, 561, 777
DpnII GATC 4 cut(s) 38, 415, 559, 775
DriI GACNNNNNGTC 1 cut(s) 805
Eam1104I CTCTTC 2 cut(s) 313, 331
Eam1105I GACNNNNNGTC 1 cut(s) 805
EarI CTCTTC 2 cut(s) 313, 331
Eco105I TACGTA 1 cut(s) 425
Eco130I CCWWGG 4 cut(s) 273, 450, 531, 736
Eco24I GRGCYC 1 cut(s) 637
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 43, 294
Eco72I CACGTG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 522
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 4 cut(s) 273, 450, 531, 736
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 4 cut(s) 273, 450, 531, 736
FaeI CATG 6 cut(s) 355, 383, 454, 560, 776, 850
FatI CATG 6 cut(s) 351, 379, 450, 556, 772, 846
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 2 cut(s) 70, 126
FokI GGATG 4 cut(s) 134, 228, 242, 252
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 2 cut(s) 70, 126
GluI GCNGC 2 cut(s) 70, 126
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 1 cut(s) 366
Hin1II CATG 6 cut(s) 355, 383, 454, 560, 776, 850
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 3 cut(s) 28, 47, 764
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 5 cut(s) 27, 43, 154, 166, 229
Hpy188III TCNNGA 3 cut(s) 144, 380, 563
Hpy8I GTNNAC 1 cut(s) 763
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 668
HpyCH4III ACNGT 3 cut(s) 551, 647, 865
HpyCH4IV ACGT 2 cut(s) 100, 424
HpyCH4V TGCA 5 cut(s) 92, 128, 320, 438, 614
HpyF3I CTNAG 2 cut(s) 580, 727
HpySE526I ACGT 2 cut(s) 100, 424
Hsp92II CATG 6 cut(s) 355, 383, 454, 560, 776, 850
KpnI GGTACC 1 cut(s) 555
Kzo9I GATC 4 cut(s) 38, 415, 559, 775
LmnI GCTCC 4 cut(s) 95, 319, 400, 632
Lsp1109I GCAGC 2 cut(s) 81, 112
LweI GCATC 2 cut(s) 112, 601
MaeII ACGT 2 cut(s) 100, 424
MaeIII GTNAC 2 cut(s) 595, 859
MalI GATC 4 cut(s) 40, 417, 561, 777
MboI GATC 4 cut(s) 38, 415, 559, 775
MboII GAAGA 6 cut(s) 76, 170, 300, 318, 379, 507
MhlI GDGCHC 3 cut(s) 100, 637, 693
MluCI AATT 5 cut(s) 79, 221, 258, 492, 741
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 7 cut(s) 239, 324, 333, 355, 376, 648, 692
MroXI GAANNNNTTC 2 cut(s) 83, 307
MseI TTAA 5 cut(s) 6, 491, 545, 714, 812
MslI CAYNNNNRTG 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 407
NcoI CCATGG 1 cut(s) 450
NdeI CATATG 1 cut(s) 628
NdeII GATC 4 cut(s) 38, 415, 559, 775
NlaIII CATG 6 cut(s) 355, 383, 454, 560, 776, 850
NlaIV GGNNCC 3 cut(s) 553, 634, 690
NspI RCATGY 2 cut(s) 355, 850
PaeR7I CTCGAG 1 cut(s) 144
PagI TCATGA 1 cut(s) 379
PciI ACATGT 1 cut(s) 351
PdmI GAANNNNTTC 2 cut(s) 83, 307
PfeI GAWTC 2 cut(s) 28, 47
PkrI GCNGC 2 cut(s) 71, 127
PleI GAGTC 1 cut(s) 758
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 1 cut(s) 758
Ppu21I YACGTR 2 cut(s) 101, 425
PpuMI RGGWCCY 1 cut(s) 522
PscI ACATGT 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 522
PspCI CACGTG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 553, 634, 690
PspPI GGNCC 2 cut(s) 364, 522
PspPPI RGGWCCY 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 3 cut(s) 537, 553, 771
RsaNI GTAC 3 cut(s) 536, 552, 770
RseI CAYNNNNRTG 1 cut(s) 214
SaqAI TTAA 5 cut(s) 6, 491, 545, 714, 812
SatI GCNGC 2 cut(s) 70, 126
Sau3AI GATC 4 cut(s) 38, 415, 559, 775
Sau96I GGNCC 2 cut(s) 364, 522
SchI GAGTC 1 cut(s) 758
SduI GDGCHC 3 cut(s) 100, 637, 693
SfaNI GCATC 2 cut(s) 112, 601
Sfr274I CTCGAG 1 cut(s) 144
SinI GGWCC 1 cut(s) 522
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SnaBI TACGTA 1 cut(s) 425
Sse9I AATT 5 cut(s) 79, 221, 258, 492, 741
SspI AATATT 1 cut(s) 132
StyI CCWWGG 4 cut(s) 273, 450, 531, 736
TaaI ACNGT 3 cut(s) 551, 647, 865
TaiI ACGT 2 cut(s) 103, 427
TaqI TCGA 5 cut(s) 37, 145, 329, 562, 622
TaqII GACCGA 1 cut(s) 102
TasI AATT 5 cut(s) 79, 221, 258, 492, 741
TatI WGTACW 1 cut(s) 769
TfiI GAWTC 2 cut(s) 28, 47
Tru1I TTAA 5 cut(s) 6, 491, 545, 714, 812
Tru9I TTAA 5 cut(s) 6, 491, 545, 714, 812
TscAI CASTG 3 cut(s) 189, 489, 870
TseI GCWGC 2 cut(s) 69, 125
TspDTI ATGAA 3 cut(s) 60, 270, 368
TspGWI ACGGA 2 cut(s) 23, 460
TspRI CASTG 3 cut(s) 189, 489, 870
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 3 cut(s) 79, 258, 741
XceI RCATGY 2 cut(s) 355, 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 144
XmnI GAANNNNTTC 2 cut(s) 83, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.