Rroxscaffold_1G00000820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013634
Physical Location & Seq
Forward (+)
1242784 .. 1245884
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000820.1

Sequence Viewer

Length: 570 bp
ATGCCATCGGAACCAAGCCCAAAGTTTCAAGCTCCAAATTCAAGTTCCTCCTCCCCACCGCCAAACTCGCTTTTGTTTCTTCGGAGAAATAGTTACCCCCTCCTCATCTCTAACTATCACATGCCAACACGGTTTCGCAACAAAGAAGCCGGGTTATGCAACGATTTCTCGGCATCGTGTCCGGTATCGGTGTGTGAAAGACTAGGGACAAAGAGTAGGACAAACCTAAGCCCAATTCACCGGATTGCATCTCTCGTAGCCCATGAAGGCAGAGGCCCAAAGGCCCACTGCCCAAACCCTATGTCCCCAACACCCACCCAGCCGAATCTAACTCTTTCGAGAAGCCGCCTACCACCACCTAATCAATCCGGATGGCCTCCCCATGCAGGAGACCATGGCGACCATCTCGCCGCCCTCCACCCGTGCTTGCGACCGCACTCGCAGCAACGGGTCGATCCTTCAAGCTTGAACCAAACTCCTCAATTGGCAGCCCGAACACCAAACTCTAGCAAATCCTCTCGCGACCTCACTCATCCATCGTACCCGAGATCGTGTCCGACGCAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.65

Weight (kDa)

10.07

Isoelectric Point (pI)

74.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 522
AccIII TCCGGA 1 cut(s) 368
AciI CCGC 4 cut(s) 59, 346, 411, 434
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 29, 42, 462, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 2 cut(s) 32, 465
AluI AGCT 2 cut(s) 32, 465
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 3 cut(s) 274, 282, 374
ApeKI GCWGC 2 cut(s) 442, 488
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 2 cut(s) 275, 283
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 544
BbvI GCAGC 2 cut(s) 454, 500
BccI CCATC 4 cut(s) 13, 366, 411, 544
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 3 cut(s) 203, 507, 568
BisI GCNGC 4 cut(s) 346, 411, 443, 489
BlsI GCNGC 4 cut(s) 347, 412, 444, 490
Bme1390I CCNGG 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 275, 283
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 182, 257
Bpu10I CCTNAGC 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 3 cut(s) 181, 240, 368
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 377, 532
BseLI CCNNNNNNNGG 1 cut(s) 386
BseRI GAGGAG 3 cut(s) 40, 92, 468
BseXI GCAGC 2 cut(s) 454, 500
BseYI CCCAGC 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 3 cut(s) 276, 284, 376
BsiEI CGRYCG 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 4 cut(s) 150, 182, 241, 369
BslFI GGGAC 2 cut(s) 220, 289
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 2 cut(s) 220, 289
BsnI GGCC 3 cut(s) 276, 284, 376
Bso31I GGTCTC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 544
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 2 cut(s) 454, 548
Bsp19I CCATGG 1 cut(s) 394
Bsp68I TCGCGA 1 cut(s) 522
BspACI CCGC 4 cut(s) 59, 346, 411, 434
BspANI GGCC 3 cut(s) 276, 284, 376
BspEI TCCGGA 1 cut(s) 368
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 2 cut(s) 454, 548
BssT1I CCWWGG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 377, 532
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 2 cut(s) 457, 551
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 2 cut(s) 454, 548
BstMCI CGRYCG 1 cut(s) 434
BstMWI GCNNNNNNNGC 2 cut(s) 67, 442
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 454, 500
BsuRI GGCC 3 cut(s) 276, 284, 376
BtgI CCRYGG 1 cut(s) 394
BtsCI GGATG 2 cut(s) 377, 532
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 286
BtuMI TCGCGA 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 275, 283
Csp6I GTAC 1 cut(s) 541
CviAII CATG 4 cut(s) 121, 263, 383, 395
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 1 cut(s) 227
DpnI GATC 2 cut(s) 456, 550
DpnII GATC 2 cut(s) 454, 548
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 4 cut(s) 124, 266, 386, 398
FaiI YATR 6 cut(s) 122, 157, 264, 302, 384, 396
FaqI GGGAC 2 cut(s) 220, 289
FatI CATG 4 cut(s) 120, 262, 382, 394
Fnu4HI GCNGC 4 cut(s) 346, 411, 443, 489
FokI GGATG 2 cut(s) 384, 519
Fsp4HI GCNGC 4 cut(s) 346, 411, 443, 489
FspBI CTAG 3 cut(s) 203, 507, 568
GluI GCNGC 4 cut(s) 346, 411, 443, 489
GsaI CCCAGC 1 cut(s) 322
HaeIII GGCC 3 cut(s) 276, 284, 376
HapII CCGG 4 cut(s) 150, 182, 241, 369
Hin1II CATG 4 cut(s) 124, 266, 386, 398
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 1 cut(s) 325
HpaII CCGG 4 cut(s) 150, 182, 241, 369
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 3 cut(s) 10, 84, 558
Hpy188III TCNNGA 3 cut(s) 339, 369, 521
Hpy99I CGWCG 1 cut(s) 562
HpyAV CCTTC 2 cut(s) 260, 468
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 159, 248, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 442
HpyF3I CTNAG 1 cut(s) 227
Hsp92II CATG 4 cut(s) 124, 266, 386, 398
Kpn2I TCCGGA 1 cut(s) 368
Kzo9I GATC 2 cut(s) 454, 548
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 6 cut(s) 163, 195, 254, 332, 372, 382
Lsp1109I GCAGC 2 cut(s) 454, 500
LweI GCATC 2 cut(s) 182, 257
MaeI CTAG 3 cut(s) 203, 507, 568
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 456, 550
MboI GATC 2 cut(s) 454, 548
MboII GAAGA 1 cut(s) 71
MfeI CAATTG 1 cut(s) 482
MluCI AATT 3 cut(s) 37, 234, 482
MroI TCCGGA 1 cut(s) 368
MspI CCGG 4 cut(s) 150, 182, 241, 369
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 482
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 67, 442
NciI CCSGG 1 cut(s) 151
NcoI CCATGG 1 cut(s) 394
NdeII GATC 2 cut(s) 454, 548
NlaIII CATG 4 cut(s) 124, 266, 386, 398
NlaIV GGNNCC 1 cut(s) 12
NmeAIII GCCGAG 1 cut(s) 149
NruI TCGCGA 1 cut(s) 522
NspI RCATGY 1 cut(s) 124
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 4 cut(s) 347, 412, 444, 490
PspFI CCCAGC 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 2 cut(s) 275, 283
RruI TCGCGA 1 cut(s) 522
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SatI GCNGC 4 cut(s) 346, 411, 443, 489
Sau3AI GATC 2 cut(s) 454, 548
Sau96I GGNCC 2 cut(s) 275, 283
ScrFI CCNGG 1 cut(s) 151
SetI ASST 5 cut(s) 34, 228, 361, 467, 528
SfaNI GCATC 2 cut(s) 182, 257
Sse9I AATT 3 cut(s) 37, 234, 482
SsiI CCGC 4 cut(s) 59, 346, 411, 434
SspMI CTAG 3 cut(s) 203, 507, 568
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 338, 453
TasI AATT 3 cut(s) 37, 234, 482
TauI GCSGC 2 cut(s) 348, 413
TfiI GAWTC 1 cut(s) 325
TscAI CASTG 1 cut(s) 293
TseI GCWGC 2 cut(s) 442, 488
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 293
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 124
XspI CTAG 3 cut(s) 203, 507, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.