Uncharacterised protein family UPF0052
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g07940 FvH4_4g20380 |
| rosa_chinensis | RchiOBHm_Chr5g0010491 RchiOBHm_Chr5g0010591 |
| rosa_multiflora | Rmu_sc0000685.1_g000021 Rmu_sc0001287.1_g000008 Rmu_sc0003480.1_g000017 Rmu_sc0015162.1_g000001 Rmu_sc0015466.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00000820 Rroxscaffold_4G00325250 |
| rosa_samantha | Rh5AG082100 Rh5AG082500 Rh5AG082600 Rh5CG090100 Rh5CG090400 Rh5DG077300 Rh5DG078000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 5, 9 |
| AcoI | YGGCCR | 1 cut(s) | 6 |
| AcuI | CTGAAG | 1 cut(s) | 49 |
| AflIII | ACRYGT | 1 cut(s) | 114 |
| AjnI | CCWGG | 1 cut(s) | 71 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 123, 155 |
| AluBI | AGCT | 2 cut(s) | 61, 69 |
| AluI | AGCT | 2 cut(s) | 61, 69 |
| Alw26I | GTCTC | 1 cut(s) | 23 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 72 |
| AoxI | GGCC | 3 cut(s) | 6, 74, 127 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 62 |
| AspS9I | GGNCC | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 72, 106 |
| BciT130I | CCWGG | 1 cut(s) | 73 |
| BcoDI | GTCTC | 1 cut(s) | 23 |
| BisI | GCNGC | 2 cut(s) | 6, 9 |
| BlsI | GCNGC | 2 cut(s) | 7, 10 |
| Bme1390I | CCNGG | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 1 cut(s) | 127 |
| BmrFI | CCNGG | 1 cut(s) | 73 |
| BmsI | GCATC | 1 cut(s) | 145 |
| BsaI | GGTCTC | 1 cut(s) | 23 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| BseBI | CCWGG | 1 cut(s) | 73 |
| BseGI | GGATG | 1 cut(s) | 111 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseX3I | CGGCCG | 1 cut(s) | 6 |
| BsgI | GTGCAG | 1 cut(s) | 66 |
| Bsh1285I | CGRYCG | 1 cut(s) | 9 |
| BshFI | GGCC | 3 cut(s) | 8, 76, 129 |
| BsiEI | CGRYCG | 1 cut(s) | 9 |
| BsmAI | GTCTC | 1 cut(s) | 23 |
| BsnI | GGCC | 3 cut(s) | 8, 76, 129 |
| Bso31I | GGTCTC | 1 cut(s) | 23 |
| BspACI | CCGC | 2 cut(s) | 5, 9 |
| BspANI | GGCC | 3 cut(s) | 8, 76, 129 |
| BspHI | TCATGA | 1 cut(s) | 142 |
| BspQI | GCTCTTC | 1 cut(s) | 68 |
| BspTNI | GGTCTC | 1 cut(s) | 23 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| Bst2UI | CCWGG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 1 cut(s) | 17 |
| Bst6I | CTCTTC | 2 cut(s) | 68, 94 |
| BstDEI | CTNAG | 1 cut(s) | 27 |
| BstF5I | GGATG | 1 cut(s) | 111 |
| BstMAI | GTCTC | 1 cut(s) | 23 |
| BstMCI | CGRYCG | 1 cut(s) | 9 |
| BstNI | CCWGG | 1 cut(s) | 73 |
| BstNSI | RCATGY | 1 cut(s) | 118 |
| BstSCI | CCNGG | 1 cut(s) | 71 |
| BstZI | CGGCCG | 1 cut(s) | 6 |
| BsuRI | GGCC | 3 cut(s) | 8, 76, 129 |
| BtsCI | GGATG | 1 cut(s) | 111 |
| CaiI | CAGNNNCTG | 1 cut(s) | 72 |
| CciI | TCATGA | 1 cut(s) | 142 |
| CciNI | GCGGCCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 127 |
| CviAII | CATG | 2 cut(s) | 115, 143 |
| CviJI | RGCY | 6 cut(s) | 8, 42, 61, 69, 76, 129 |
| CviKI_1 | RGCY | 6 cut(s) | 8, 42, 61, 69, 76, 129 |
| DdeI | CTNAG | 1 cut(s) | 27 |
| EaeI | YGGCCR | 1 cut(s) | 6 |
| EagI | CGGCCG | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 2 cut(s) | 68, 94 |
| EarI | CTCTTC | 2 cut(s) | 68, 94 |
| EclXI | CGGCCG | 1 cut(s) | 6 |
| Eco31I | GGTCTC | 1 cut(s) | 23 |
| Eco52I | CGGCCG | 1 cut(s) | 6 |
| Eco57I | CTGAAG | 1 cut(s) | 49 |
| EcoRII | CCWGG | 1 cut(s) | 71 |
| EcoT22I | ATGCAT | 1 cut(s) | 160 |
| FaeI | CATG | 2 cut(s) | 118, 146 |
| FaiI | YATR | 3 cut(s) | 116, 144, 160 |
| FatI | CATG | 2 cut(s) | 114, 142 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 9 |
| FokI | GGATG | 1 cut(s) | 118 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 9 |
| GluI | GCNGC | 2 cut(s) | 6, 9 |
| HaeIII | GGCC | 3 cut(s) | 8, 76, 129 |
| Hin1II | CATG | 2 cut(s) | 118, 146 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 1 cut(s) | 51 |
| Hpy188III | TCNNGA | 1 cut(s) | 143 |
| Hpy8I | GTNNAC | 1 cut(s) | 51 |
| HpyCH4III | ACNGT | 1 cut(s) | 17 |
| HpyCH4V | TGCA | 2 cut(s) | 83, 158 |
| HpyF3I | CTNAG | 1 cut(s) | 27 |
| Hsp92II | CATG | 2 cut(s) | 118, 146 |
| LguI | GCTCTTC | 1 cut(s) | 68 |
| LmnI | GCTCC | 1 cut(s) | 74 |
| LpnPI | CCDG | 4 cut(s) | 39, 58, 85, 93 |
| LweI | GCATC | 1 cut(s) | 145 |
| MboII | GAAGA | 2 cut(s) | 55, 81 |
| MnlI | CCTC | 5 cut(s) | 34, 87, 87, 96, 139 |
| Mph1103I | ATGCAT | 1 cut(s) | 160 |
| MroXI | GAANNNNTTC | 1 cut(s) | 62 |
| MspA1I | CMGCKG | 1 cut(s) | 11 |
| MspR9I | CCNGG | 1 cut(s) | 73 |
| MvaI | CCWGG | 1 cut(s) | 73 |
| NlaIII | CATG | 2 cut(s) | 118, 146 |
| NotI | GCGGCCGC | 1 cut(s) | 6 |
| NsiI | ATGCAT | 1 cut(s) | 160 |
| NspI | RCATGY | 1 cut(s) | 118 |
| PagI | TCATGA | 1 cut(s) | 142 |
| PciI | ACATGT | 1 cut(s) | 114 |
| PciSI | GCTCTTC | 1 cut(s) | 68 |
| PdmI | GAANNNNTTC | 1 cut(s) | 62 |
| PkrI | GCNGC | 2 cut(s) | 7, 10 |
| PscI | ACATGT | 1 cut(s) | 114 |
| Psp6I | CCWGG | 1 cut(s) | 71 |
| PspGI | CCWGG | 1 cut(s) | 71 |
| PspPI | GGNCC | 1 cut(s) | 127 |
| PstNI | CAGNNNCTG | 1 cut(s) | 72 |
| SapI | GCTCTTC | 1 cut(s) | 68 |
| SatI | GCNGC | 2 cut(s) | 6, 9 |
| Sau96I | GGNCC | 1 cut(s) | 127 |
| ScrFI | CCNGG | 1 cut(s) | 73 |
| SetI | ASST | 3 cut(s) | 63, 71, 150 |
| SfaNI | GCATC | 1 cut(s) | 145 |
| SgeI | CNNG | 9 cut(s) | 45, 66, 84, 85, 92, 105, 127, 148, 155 |
| SsiI | CCGC | 2 cut(s) | 5, 9 |
| StyD4I | CCNGG | 1 cut(s) | 71 |
| TaaI | ACNGT | 1 cut(s) | 17 |
| TaqI | TCGA | 2 cut(s) | 32, 92 |
| TauI | GCSGC | 2 cut(s) | 8, 11 |
| TspDTI | ATGAA | 1 cut(s) | 131 |
| XceI | RCATGY | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 62 |
| Zsp2I | ATGCAT | 1 cut(s) | 160 |