Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013634

Physical Location & Seq

Genomic Coordinates Reverse (-)

7087995 .. 7102490

Gene Structure 14496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCCTCATGGCATGCCATCGCCAGTTTGAGGGGGGAGATGCAAAGAGTATAATTGGTAATGAAGATAGCCAGGTCCTCCCTGCTCCAAACCGAGCTTTGATGGTTCAGCTACGTAATGTGGATTGCATTGTTTATGCCATGGCATGGGTTAATTCCCTCTTTACTTCTGTTTGCCCATCACTGGCATTAATTGGCATTGGGAAGATTATATGTTCAAGCCAGGTCCTGCCGCAAGCCCGCAAGGTACCTAGTCATCAAACTTTTAATTTACATATATCACAAGATACAACTGTCATTCAGCAGCCAAATTTCCAATGTTCTCCAGGTTCTCCAGCTCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0052

Protein Analysis

115

Amino Acids

12.48

Weight (kDa)

6.8

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07940 FvH4_4g20380
rosa_chinensis	RchiOBHm_Chr5g0010491 RchiOBHm_Chr5g0010591
rosa_multiflora	Rmu_sc0000685.1_g000021 Rmu_sc0001287.1_g000008 Rmu_sc0003480.1_g000017 Rmu_sc0015162.1_g000001 Rmu_sc0015466.1_g000005
rosa_roxburghii	Rroxscaffold_1G00000820 Rroxscaffold_4G00325250
rosa_samantha	Rh5AG082100 Rh5AG082500 Rh5AG082600 Rh5CG090100 Rh5CG090400 Rh5DG077300 Rh5DG078000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	147
AciI	CCGC	2 cut(s)	233, 241
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	3 cut(s)	31, 147, 184
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	3 cut(s)	72, 222, 325
AluBI	AGCT	3 cut(s)	98, 112, 338
AluI	AGCT	3 cut(s)	98, 112, 338
AlwNI	CAGNNNCTG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	310
AseI	ATTAAT	1 cut(s)	191
Asp718I	GGTACC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	4, 76, 226
AvaII	GGWCC	2 cut(s)	76, 226
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BanI	GGYRCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	27, 97, 187
BciT130I	CCWGG	3 cut(s)	74, 224, 327
BfaI	CTAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	233, 305
BlsI	GCNGC	2 cut(s)	234, 306
Bme1390I	CCNGG	3 cut(s)	74, 224, 327
Bme18I	GGWCC	2 cut(s)	76, 226
BmgT120I	GGNCC	3 cut(s)	4, 76, 226
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	3 cut(s)	74, 224, 327
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	309, 318
Bpu10I	CCTNAGC	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 147, 184
Bse1I	ACTGG	2 cut(s)	25, 189
BseBI	CCWGG	3 cut(s)	74, 224, 327
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	31, 147, 184
BseNI	ACTGG	2 cut(s)	25, 189
BseXI	GCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	31, 147, 184
BsnI	GGCC	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	233, 241
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	25, 189
BssECI	CCNNGG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	74, 224, 327
Bst4CI	ACNGT	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	16, 237, 241
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	74, 224, 327
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	3 cut(s)	72, 222, 325
BstSNI	TACGTA	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	3 cut(s)	16, 237, 241
CaiI	CAGNNNCTG	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	4, 76, 226
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	4 cut(s)	10, 15, 142, 147
CviJI	RGCY	8 cut(s)	5, 72, 98, 112, 222, 239, 307, 338
CviKI_1	RGCY	8 cut(s)	5, 72, 98, 112, 222, 239, 307, 338
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	339
Eco105I	TACGTA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	76, 226
EcoO109I	RGGNCCY	2 cut(s)	76, 226
EcoRII	CCWGG	3 cut(s)	72, 222, 325
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	4 cut(s)	13, 18, 145, 150
FatI	CATG	4 cut(s)	9, 14, 141, 146
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	2 cut(s)	233, 305
Fsp4HI	GCNGC	2 cut(s)	233, 305
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	233, 305
GsuI	CTGGAG	2 cut(s)	309, 318
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	13, 18, 145, 150
Hpy188III	TCNNGA	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	44, 129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	13, 18, 145, 150
KpnI	GGTACC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	115
MboII	GAAGA	2 cut(s)	77, 217
MluCI	AATT	5 cut(s)	54, 154, 192, 268, 310
MnlI	CCTC	4 cut(s)	17, 25, 89, 170
MseI	TTAA	3 cut(s)	153, 191, 267
MspR9I	CCNGG	3 cut(s)	74, 224, 327
MvaI	CCWGG	3 cut(s)	74, 224, 327
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	141
NlaIII	CATG	4 cut(s)	13, 18, 145, 150
NlaIV	GGNNCC	1 cut(s)	249
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	234, 306
Ppu21I	YACGTR	1 cut(s)	116
PpuMI	RGGWCCY	2 cut(s)	76, 226
PshBI	ATTAAT	1 cut(s)	191
Psp5II	RGGWCCY	2 cut(s)	76, 226
Psp6I	CCWGG	3 cut(s)	72, 222, 325
PspGI	CCWGG	3 cut(s)	72, 222, 325
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	3 cut(s)	4, 76, 226
PspPPI	RGGWCCY	2 cut(s)	76, 226
PstNI	CAGNNNCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SaqAI	TTAA	3 cut(s)	153, 191, 267
SatI	GCNGC	2 cut(s)	233, 305
Sau96I	GGNCC	3 cut(s)	4, 76, 226
ScrFI	CCNGG	3 cut(s)	74, 224, 327
SetI	ASST	9 cut(s)	78, 100, 114, 118, 228, 249, 253, 331, 340
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	2 cut(s)	76, 226
SnaBI	TACGTA	1 cut(s)	116
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	5 cut(s)	54, 154, 192, 268, 310
SsiI	CCGC	2 cut(s)	233, 241
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	72, 222, 325
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	118
TasI	AATT	5 cut(s)	54, 154, 192, 268, 310
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	153, 191, 267
Tru9I	TTAA	3 cut(s)	153, 191, 267
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	76, 226
VspI	ATTAAT	1 cut(s)	191
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.