Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003673.1

Orthogroup ID

OG0011564

Physical Location & Seq

Genomic Coordinates Reverse (-)

92172 .. 93521

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003673.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atggcaattaaggagaggaaagatcaagaattgaagaaaaagctagcagacaccgggaacaatatcatggagagttttggaggagatgacattgcaactatagcaagtgatttgatatcttccatgagcagcattgtgcctgaaaattctttactgtcgaccaaatgttgcatctttgcaaccccaaaattactcttgaaagataatgaaaaatcttatttacccacggcattcgccattgggccagtgcaccatggcaaaccagacttgcaggaggcagagcaaattaaactgacgtatacacgagacctcattgctcgagtctcacaatggaatgacatgattgtgaaggacttagtcgaagagattgcaagtcttgaggaacaagcccgccaatactacgctgtgccagtgaaattcaataaagcaaagtttgtaaaactgttgttggttgatggttgctttatcatcgagctattccgtaaaaagctaggtgattcacctatttatgaggctgacccagtatatggtaggcctttcttacgtgaggtattaggaactgacttgttattactagaaaaccaaataccttggatggttctcgatcgattgtttagcagcacaactcgtactggtgcaagtcccctgactcgagtaaccttattcttctttagtttcttgggaacaggagggttagatctacaaacggaaaatagtttcatgcccagcactttagatcaaagcaagcacgtacttgagctgttaagaaactcattagtttggtcaactattccagatggaggcgtgcttgatacatgggagctaattccgagtgcctcgagtctgatggaagctggtgttaaattcaagaagggtagtacatcgaatggcttattggatatcaaattcagtaatggggtacttgaaataccacctttggttattgtcgaaccgacaaaagctttcttccgaagcttggttagctatgagcagtgttaccattggtgccatcctaagatcacttcttatgccatgtttttagatcttctcatcaacacttcaaaagatatggatatactctgcaaaaacggaatcattcagaattggttgaatccagaagatgcgacccagatcttcaacaacctttacaatgatgcaaatgtcagccacttctattatcttgaactttgccgggaagtgaacaagtattgcaatcgtcgttggccaagatggcgagcaatgtatgtgcgaaatcatttcagcagtccatgggcaatcgcttctcaagttttggcagctatcatatttattttcacattgttgcaaacagtgtttagcatcaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

449

Amino Acids

51.01

Weight (kDa)

6.22

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011564)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22950
rosa_chinensis	RchiOBHm_Chr6g0269291
rosa_laevigata	RLG00000002978 RLG00000002984 RLG00000008853
rosa_multiflora	Rmu_sc0003673.1_g000022
rosa_roxburghii	Rroxscaffold_3G00247590 Rroxscaffold_7G00198860
rosa_rugosa	Rorug07G0127200
rosa_samantha	Rh6BG119100 Rh6BG119200 Rh6BG172600 Rh6CG117300 Rh6CG166500 Rh6DG105700 Rh6DG106000 Rh7AG259900 Rh7AG260100 Rh7CG276700 Rh7CG276800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1005
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccI	GTMKAC	2 cut(s)	158, 299
AciI	CCGC	1 cut(s)	391
AcoI	YGGCCR	1 cut(s)	1223
AcsI	RAATTY	4 cut(s)	145, 416, 863, 905
AfaI	GTAC	4 cut(s)	631, 753, 880, 921
AfiI	CCNNNNNNNGG	3 cut(s)	527, 800, 976
AgsI	TTSAA	9 cut(s)	34, 199, 421, 868, 926, 1062, 1111, 1138, 1184
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	300, 328
Alw44I	GTGCAC	1 cut(s)	248
Ama87I	CYCGRG	3 cut(s)	318, 651, 838
AoxI	GGCC	3 cut(s)	242, 533, 1223
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	129, 618, 1295
ApoI	RAATTY	4 cut(s)	145, 416, 863, 905
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	55, 1193
AsuHPI	GGTGA	2 cut(s)	492, 506
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	3 cut(s)	318, 651, 838
BaeGI	GKGCMC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	1225
BanI	GGYRCC	1 cut(s)	1005
BauI	CACGAG	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	141, 630, 1307
BccI	CCATC	6 cut(s)	449, 589, 791, 841, 1017, 1224
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcnI	CCSGG	2 cut(s)	55, 1193
BcoDI	GTCTC	2 cut(s)	300, 328
BfaI	CTAG	3 cut(s)	44, 491, 575
BfmI	CTRYAG	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	1231
BglII	AGATCT	3 cut(s)	697, 1042, 1131
BisI	GCNGC	3 cut(s)	130, 619, 1296
BlsI	GCNGC	3 cut(s)	131, 620, 1297
Bme1390I	CCNGG	2 cut(s)	55, 1193
BmeT110I	CYCGRG	3 cut(s)	318, 651, 838
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	1007
BmrFI	CCNGG	2 cut(s)	55, 1193
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	3 cut(s)	180, 1111, 1144
BmtI	GCTAGC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	515
BpuEI	CTTGAG	3 cut(s)	398, 776, 1269
BpuMI	CCSGG	2 cut(s)	55, 1193
Bsa29I	ATCGAT	1 cut(s)	607
BsaAI	YACGTR	2 cut(s)	545, 751
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	225, 253, 590, 1268
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 800, 976
Bse1I	ACTGG	4 cut(s)	245, 410, 521, 637
Bse3DI	GCAATG	3 cut(s)	90, 312, 1245
BseCI	ATCGAT	1 cut(s)	607
BseDI	CCNNGG	4 cut(s)	225, 253, 590, 1268
BseGI	GGATG	2 cut(s)	600, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	527, 800, 976
BseMI	GCAATG	3 cut(s)	90, 312, 1245
BseNI	ACTGG	4 cut(s)	245, 410, 521, 637
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	141, 630, 1307
BseYI	CCCAGC	1 cut(s)	725
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	3 cut(s)	244, 535, 1225
BshNI	GGYRCC	1 cut(s)	1005
BshVI	ATCGAT	1 cut(s)	607
BsiEI	CGRYCG	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	3 cut(s)	318, 651, 838
BsiSI	CCGG	2 cut(s)	54, 1192
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	3 cut(s)	527, 800, 976
BsmAI	GTCTC	2 cut(s)	300, 328
BsmFI	GGGAC	1 cut(s)	627
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	244, 535, 1225
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	3 cut(s)	318, 651, 838
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
Bsp19I	CCATGG	2 cut(s)	253, 1268
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	3 cut(s)	244, 535, 1225
BspDI	ATCGAT	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	1007
BspOI	GCTAGC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	1005
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	3 cut(s)	90, 312, 1245
BsrI	ACTGG	4 cut(s)	245, 410, 521, 637
BssECI	CCNNGG	4 cut(s)	225, 253, 590, 1268
BssMI	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
BssNAI	GTATAC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	3 cut(s)	253, 590, 1268
Bst1107I	GTATAC	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	156, 444, 1330
Bst6I	CTCTTC	1 cut(s)	357
BstBAI	YACGTR	2 cut(s)	545, 751
BstC8I	GCNNGC	5 cut(s)	45, 391, 746, 806, 1236
BstDEI	CTNAG	2 cut(s)	355, 1014
BstDSI	CCRYGG	3 cut(s)	225, 253, 1268
BstF5I	GGATG	2 cut(s)	600, 1009
BstKTI	GATC	7 cut(s)	25, 607, 700, 739, 1020, 1045, 1134
BstMAI	GTCTC	2 cut(s)	300, 328
BstMBI	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 981, 1231
BstSCI	CCNGG	2 cut(s)	53, 1191
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	141, 630, 1307
BstX2I	RGATCY	3 cut(s)	697, 1042, 1131
BstYI	RGATCY	3 cut(s)	697, 1042, 1131
BstZ17I	GTATAC	1 cut(s)	300
Bsu15I	ATCGAT	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	244, 535, 1225
BsuTUI	ATCGAT	1 cut(s)	607
BtgI	CCRYGG	3 cut(s)	225, 253, 1268
BtsCI	GGATG	2 cut(s)	600, 1009
BtsI	GCAGTG	1 cut(s)	998
BtsIMutI	CAGTG	4 cut(s)	252, 417, 998, 1335
Cac8I	GCNNGC	5 cut(s)	45, 391, 746, 806, 1236
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	607
Csp6I	GTAC	4 cut(s)	630, 752, 879, 920
CviAII	CATG	8 cut(s)	67, 124, 254, 340, 721, 816, 1033, 1269
CviQI	GTAC	4 cut(s)	630, 752, 879, 920
DdeI	CTNAG	2 cut(s)	355, 1014
DpnI	GATC	7 cut(s)	24, 606, 699, 738, 1019, 1044, 1133
DpnII	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
EaeI	YGGCCR	1 cut(s)	1223
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	3 cut(s)	253, 590, 1268
Eco147I	AGGCCT	1 cut(s)	535
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	2 cut(s)	117, 901
Eco88I	CYCGRG	3 cut(s)	318, 651, 838
EcoRV	GATATC	2 cut(s)	117, 901
EcoT14I	CCWWGG	3 cut(s)	253, 590, 1268
ErhI	CCWWGG	3 cut(s)	253, 590, 1268
FaeI	CATG	8 cut(s)	70, 127, 257, 343, 724, 819, 1036, 1272
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	8 cut(s)	66, 123, 253, 339, 720, 815, 1032, 1268
FauI	CCCGC	1 cut(s)	398
FblI	GTMKAC	2 cut(s)	158, 299
Fnu4HI	GCNGC	3 cut(s)	130, 619, 1296
FokI	GGATG	2 cut(s)	607, 996
Fsp4HI	GCNGC	3 cut(s)	130, 619, 1296
FspBI	CTAG	3 cut(s)	44, 491, 575
GluI	GCNGC	3 cut(s)	130, 619, 1296
GsaI	CCCAGC	1 cut(s)	729
HaeIII	GGCC	3 cut(s)	244, 535, 1225
HapII	CCGG	2 cut(s)	54, 1192
Hin1II	CATG	8 cut(s)	70, 127, 257, 343, 724, 819, 1036, 1272
HincII	GTYRAC	2 cut(s)	159, 786
HindII	GTYRAC	2 cut(s)	159, 786
HindIII	AAGCTT	2 cut(s)	960, 973
HinfI	GANTC	6 cut(s)	321, 497, 649, 841, 1092, 1111
HpaII	CCGG	2 cut(s)	54, 1192
HphI	GGTGA	2 cut(s)	492, 506
Hpy166II	GTNNAC	5 cut(s)	159, 250, 300, 786, 1201
Hpy188I	TCNGA	4 cut(s)	831, 846, 971, 1101
Hpy188III	TCNNGA	9 cut(s)	26, 196, 377, 602, 794, 868, 1115, 1181, 1342
Hpy8I	GTNNAC	5 cut(s)	159, 250, 300, 786, 1201
Hpy99I	CGWCG	1 cut(s)	1221
HpyAV	CCTTC	2 cut(s)	343, 865
HpyCH4III	ACNGT	3 cut(s)	156, 444, 1330
HpyCH4IV	ACGT	3 cut(s)	296, 544, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 981, 1231
HpyF3I	CTNAG	2 cut(s)	355, 1014
HpySE526I	ACGT	3 cut(s)	296, 544, 750
Hsp92II	CATG	8 cut(s)	70, 127, 257, 343, 724, 819, 1036, 1272
Kzo9I	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
LmnI	GCTCC	1 cut(s)	820
Lsp1109I	GCAGC	3 cut(s)	141, 630, 1307
LweI	GCATC	3 cut(s)	180, 1111, 1144
MaeI	CTAG	3 cut(s)	44, 491, 575
MaeII	ACGT	3 cut(s)	296, 544, 750
MaeIII	GTNAC	2 cut(s)	655, 995
MalI	GATC	7 cut(s)	24, 606, 699, 738, 1019, 1044, 1133
MboI	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
MboII	GAAGA	8 cut(s)	46, 111, 374, 658, 958, 1037, 1126, 1130
MflI	RGATCY	3 cut(s)	697, 1042, 1131
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	1225
MluNI	TGGCCA	1 cut(s)	1225
MlyI	GAGTC	3 cut(s)	330, 643, 850
Mox20I	TGGCCA	1 cut(s)	1225
MscI	TGGCCA	1 cut(s)	1225
MseI	TTAA	5 cut(s)	9, 288, 764, 861, 1348
MslI	CAYNNNNRTG	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	1225
MspI	CCGG	2 cut(s)	54, 1192
MspR9I	CCNGG	2 cut(s)	55, 1193
Mva1269I	GAATGC	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	101, 981, 1231
NciI	CCSGG	2 cut(s)	55, 1193
NcoI	CCATGG	2 cut(s)	253, 1268
NdeII	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	8 cut(s)	70, 127, 257, 343, 724, 819, 1036, 1272
NlaIV	GGNNCC	1 cut(s)	1007
PaeR7I	CTCGAG	3 cut(s)	318, 651, 838
PceI	AGGCCT	1 cut(s)	535
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	497, 1092, 1111
PflFI	GACNNNGTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	131, 620, 1297
Ple19I	CGATCG	1 cut(s)	607
PleI	GAGTC	3 cut(s)	329, 643, 849
PpsI	GAGTC	3 cut(s)	329, 643, 849
Ppu21I	YACGTR	2 cut(s)	545, 751
PspFI	CCCAGC	1 cut(s)	725
PspN4I	GGNNCC	1 cut(s)	1007
PspPI	GGNCC	1 cut(s)	242
PspXI	VCTCGAGB	3 cut(s)	318, 651, 838
PsuI	RGATCY	3 cut(s)	697, 1042, 1131
PsyI	GACNNNGTC	1 cut(s)	356
PvuI	CGATCG	1 cut(s)	607
RsaI	GTAC	4 cut(s)	631, 753, 880, 921
RsaNI	GTAC	4 cut(s)	630, 752, 879, 920
RseI	CAYNNNNRTG	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	157
SaqAI	TTAA	5 cut(s)	9, 288, 764, 861, 1348
SatI	GCNGC	3 cut(s)	130, 619, 1296
Sau3AI	GATC	7 cut(s)	22, 604, 697, 736, 1017, 1042, 1131
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	3 cut(s)	330, 643, 850
ScrFI	CCNGG	2 cut(s)	55, 1193
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	3 cut(s)	180, 1111, 1144
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	3 cut(s)	318, 651, 838
SlaI	CTCGAG	3 cut(s)	318, 651, 838
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	6 cut(s)	318, 377, 651, 755, 838, 1284
SmoI	CTYRAG	6 cut(s)	318, 377, 651, 755, 838, 1284
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	391
SspMI	CTAG	3 cut(s)	44, 491, 575
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	2 cut(s)	53, 1191
StyI	CCWWGG	3 cut(s)	253, 590, 1268
TaaI	ACNGT	3 cut(s)	156, 444, 1330
TaiI	ACGT	3 cut(s)	299, 547, 753
TatI	WGTACW	1 cut(s)	878
TfiI	GAWTC	3 cut(s)	497, 1092, 1111
Tru1I	TTAA	5 cut(s)	9, 288, 764, 861, 1348
Tru9I	TTAA	5 cut(s)	9, 288, 764, 861, 1348
TscAI	CASTG	4 cut(s)	252, 417, 998, 1335
TseI	GCWGC	3 cut(s)	129, 618, 1295
TspDTI	ATGAA	2 cut(s)	222, 709
TspGWI	ACGGA	3 cut(s)	470, 722, 1104
TspRI	CASTG	4 cut(s)	252, 417, 998, 1335
Tth111I	GACNNNGTC	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	527
VneI	GTGCAC	1 cut(s)	248
XapI	RAATTY	4 cut(s)	145, 416, 863, 905
XhoI	CTCGAG	3 cut(s)	318, 651, 838
XmiI	GTMKAC	2 cut(s)	158, 299
XspI	CTAG	3 cut(s)	44, 491, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.