Rh6DG105700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011564
Physical Location & Seq
Reverse (-)
13507244 .. 13508650
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG105700.1

Sequence Viewer

Length: 1407 bp
ATGCAAGGTTTTGGAAGAGATAGCAACACAATTGATATTACCTCTATACAAAGAGACTGGCTATCTTCCATGAGCAATATTGTGGTTGAAAATTCTTTATTGTCGACCAAAAGCTGCATCTTCGTAACTCCAAAACTACTCTTCAAAAACAATGAAAAAGCGTATGTCCCCACAGCATTCTCAATTGGCCCTTTGCACCATGGAAAACCAGAGTTTAAAGAGGCGGAGCAAATTAAACTGAAATATACGCGAGACCTCATCTCTCGAGTGGAGAAATGGAAACCAACAATTGTGCAGGACTTGGTCGAAGAGATTGCAGGTCTCGAGAAAGAAGCCCGCGAATGTTACTCTGTACCGGTGGAGCCCACAAGAGATGGGTTTATTAAAATTTTGTTAATTGATGGTTGCTTTCTCATCGAGCTATTCCTTAAACCACATTTCCCTGAGGCTGAGGATAACCCCGTGCGGCGTAGGCCTTTCTTAACTGAGGTATTGAGCACTGACTTGTTATTACTAGAAAACCAAATACCTTGGATGGTGCTCGATAAATTGTTTAGTCGGATCATGGTTGCTGGGACAGAGCTTCTGACTCAGCTAGCCCAGGACTTTCCTCCGAGCACTCCTCCTGGGACAGAGCTCCTGACTCAGCTTGCCAGGGACTCTCCTCGGACCACTCCTCCCATGACAGAGCTCCTGACTCAGCTAGCTTGGGACCATTTTGGTTACTTAATTCAGGAAAAACAAAATATACCTAGCACTTTGTTAAACACTCTCCATTACACTTTGGGTCGAAGCAAGCGTCTACATCTACTTGAGCTATTGAGAAGTTCATTAATCGGATCAACTACGACAGGAGGAGGTGACCTTGATGAATGGGAATTAATTCCGAGTGCCTCAAGTTTAATAGAAGCTGGAGTGAAAATCAGGAAGCTAGCTAGTACAGATGGTGGCATGTTGGATATCAAATTTAGTAATGGGATACTCGAAATACCACCTTTCATTATTCATGAGGCAACTGAATCTTTATTCCGAAACATGATAAGCTTTGAACAGTGTTACAACAGGTGTGAGCCTAGGATCACTTGTTATGCCATGCTTTTAGATATACTCATCAACACTCCGAAGGACATGGATATACTTGTCAAAAATGGAATTATTCGAAACTGGTTGAATCCAGAAGAGGCCACCCAGATTTTCAACAAGCTTTATTATGATGCATGTGTCACTGAGTTCTATTACCTCGAGCTTTGCAAGGAAGTGAATAAGTATTGCAAACGTCGTTGGCCAAGATGGCGAGCAATATATGTCAGAAATCATTTCCGCAGTCCATGGGCAATCGCTTCACAAGTGTTCGCAGCTATCATAATTGTTCTTGCATTATTGCAAACAGTTTTCAGCATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

468

Amino Acids

53.63

Weight (kDa)

6.0

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 40 - 458 6.8e-98 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AccI GTMKAC 2 cut(s) 104, 802
AccII CGCG 2 cut(s) 250, 339
AciI CCGC 4 cut(s) 224, 337, 466, 1321
AclWI GGATC 3 cut(s) 569, 847, 1085
AcoI YGGCCR 1 cut(s) 1283
AcsI RAATTY 3 cut(s) 91, 387, 965
AfaI GTAC 2 cut(s) 354, 940
AgeI ACCGGT 1 cut(s) 355
AgsI TTSAA 5 cut(s) 89, 145, 1049, 1171, 1198
AjnI CCWGG 3 cut(s) 600, 625, 653
Alw21I GWGCWC 5 cut(s) 500, 543, 620, 639, 693
Alw26I GTCTC 3 cut(s) 48, 246, 326
AlwI GGATC 3 cut(s) 569, 847, 1085
Ama87I CYCGRG 3 cut(s) 264, 323, 1241
AoxI GGCC 4 cut(s) 187, 473, 1182, 1283
ApeKI GCWGC 2 cut(s) 114, 1355
ApoI RAATTY 3 cut(s) 91, 387, 965
ArsI GACNNNNNNTTYG 2 cut(s) 784, 816
AseI ATTAAT 2 cut(s) 833, 881
AsiGI ACCGGT 1 cut(s) 355
Asp700I GAANNNNTTC 1 cut(s) 882
AspA2I CCTAGG 1 cut(s) 1073
AspS9I GGNCC 3 cut(s) 188, 669, 712
AsuHPI GGTGA 1 cut(s) 872
AsuII TTCGAA 1 cut(s) 1159
AsuNHI GCTAGC 3 cut(s) 595, 703, 931
AvaI CYCGRG 3 cut(s) 264, 323, 1241
AvaII GGWCC 2 cut(s) 669, 712
AvrII CCTAGG 1 cut(s) 1073
AxyI CCTNAGG 1 cut(s) 444
BalI TGGCCA 1 cut(s) 1285
BanII GRGCYC 3 cut(s) 366, 639, 693
Bbv12I GWGCWC 5 cut(s) 500, 543, 620, 639, 693
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 101, 1367
BccI CCATC 5 cut(s) 368, 395, 529, 938, 1284
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 3 cut(s) 602, 627, 655
BciVI GTATCC 1 cut(s) 972
BcoDI GTCTC 3 cut(s) 48, 246, 326
BfaI CTAG 7 cut(s) 515, 596, 704, 753, 932, 936, 1074
BfuAI ACCTGC 1 cut(s) 308
BfuI GTATCC 1 cut(s) 972
BglI GCCNNNNNGGC 1 cut(s) 1291
BisI GCNGC 3 cut(s) 115, 467, 1356
BlnI CCTAGG 1 cut(s) 1073
BlsI GCNGC 3 cut(s) 116, 468, 1357
Bme1390I CCNGG 3 cut(s) 602, 627, 655
Bme18I GGWCC 2 cut(s) 669, 712
BmeT110I CYCGRG 3 cut(s) 264, 323, 1241
BmgT120I GGNCC 3 cut(s) 188, 669, 712
BmiI GGNNCC 2 cut(s) 363, 713
BmrFI CCNGG 3 cut(s) 602, 627, 655
BmsI GCATC 2 cut(s) 126, 1204
BmtI GCTAGC 3 cut(s) 599, 707, 935
BplI GAGNNNNNCTC 2 cut(s) 607, 639
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 1159
BpuEI CTTGAG 2 cut(s) 833, 880
BsaI GGTCTC 2 cut(s) 246, 326
BsaJI CCNNGG 8 cut(s) 199, 530, 600, 626, 654, 665, 1073, 1328
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 62, 1169
Bse21I CCTNAGG 1 cut(s) 444
BseBI CCWGG 3 cut(s) 602, 627, 655
BseDI CCNNGG 8 cut(s) 199, 530, 600, 626, 654, 665, 1073, 1328
BseGI GGATG 1 cut(s) 540
BseMII CTCAG 7 cut(s) 435, 441, 477, 605, 659, 713, 1218
BseNI ACTGG 2 cut(s) 62, 1169
BseRI GAGGAG 4 cut(s) 612, 654, 666, 870
BseXI GCAGC 2 cut(s) 101, 1367
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 250, 339
BshFI GGCC 4 cut(s) 189, 475, 1184, 1285
BshTI ACCGGT 1 cut(s) 355
BsiHKAI GWGCWC 5 cut(s) 500, 543, 620, 639, 693
BsiHKCI CYCGRG 3 cut(s) 264, 323, 1241
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 5 cut(s) 152, 589, 643, 671, 725
BsmAI GTCTC 3 cut(s) 48, 246, 326
BsmFI GGGAC 5 cut(s) 152, 589, 643, 671, 725
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 4 cut(s) 189, 475, 1184, 1285
Bso31I GGTCTC 2 cut(s) 246, 326
BsoBI CYCGRG 3 cut(s) 264, 323, 1241
Bsp119I TTCGAA 1 cut(s) 1159
Bsp1286I GDGCHC 6 cut(s) 366, 500, 543, 620, 639, 693
Bsp143I GATC 3 cut(s) 561, 839, 1077
Bsp19I CCATGG 2 cut(s) 199, 1328
BspACI CCGC 4 cut(s) 224, 337, 466, 1321
BspANI GGCC 4 cut(s) 189, 475, 1184, 1285
BspCNI CTCAG 7 cut(s) 436, 442, 478, 604, 658, 712, 1219
BspFNI CGCG 2 cut(s) 250, 339
BspHI TCATGA 1 cut(s) 1006
BspLI GGNNCC 2 cut(s) 363, 713
BspMI ACCTGC 1 cut(s) 308
BspOI GCTAGC 3 cut(s) 599, 707, 935
BspPI GGATC 3 cut(s) 569, 847, 1085
BspT104I TTCGAA 1 cut(s) 1159
BspTNI GGTCTC 2 cut(s) 246, 326
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 2 cut(s) 62, 1169
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 8 cut(s) 199, 530, 600, 626, 654, 665, 1073, 1328
BssMI GATC 3 cut(s) 561, 839, 1077
BssT1I CCWWGG 4 cut(s) 199, 530, 1073, 1328
Bst2UI CCWGG 3 cut(s) 602, 627, 655
Bst4CI ACNGT 2 cut(s) 1053, 1390
Bst6I CTCTTC 4 cut(s) 10, 146, 303, 1173
BstBI TTCGAA 1 cut(s) 1159
BstC8I GCNNGC 7 cut(s) 337, 597, 651, 705, 797, 933, 1296
BstDEI CTNAG 7 cut(s) 444, 450, 486, 591, 645, 699, 1227
BstDSI CCRYGG 2 cut(s) 199, 1328
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 1 cut(s) 540
BstFNI CGCG 2 cut(s) 250, 339
BstKTI GATC 3 cut(s) 564, 842, 1080
BstMAI GTCTC 3 cut(s) 48, 246, 326
BstMBI GATC 3 cut(s) 561, 839, 1077
BstMWI GCNNNNNNNGC 2 cut(s) 472, 1291
BstNI CCWGG 3 cut(s) 602, 627, 655
BstNSI RCATGY 2 cut(s) 955, 1221
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 600, 625, 653
BstUI CGCG 2 cut(s) 250, 339
BstV1I GCAGC 2 cut(s) 101, 1367
Bsu36I CCTNAGG 1 cut(s) 444
BsuI GTATCC 1 cut(s) 972
BsuRI GGCC 4 cut(s) 189, 475, 1184, 1285
BtgI CCRYGG 2 cut(s) 199, 1328
BtsCI GGATG 1 cut(s) 540
BtsIMutI CAGTG 3 cut(s) 498, 1058, 1224
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 7 cut(s) 337, 597, 651, 705, 797, 933, 1296
CciI TCATGA 1 cut(s) 1006
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 188, 669, 712
CseI GACGC 1 cut(s) 788
Csp6I GTAC 2 cut(s) 353, 939
CspAI ACCGGT 1 cut(s) 355
CviQI GTAC 2 cut(s) 353, 939
DdeI CTNAG 7 cut(s) 444, 450, 486, 591, 645, 699, 1227
DpnI GATC 3 cut(s) 563, 841, 1079
DpnII GATC 3 cut(s) 561, 839, 1077
DraI TTTAAA 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 1283
Eam1104I CTCTTC 4 cut(s) 10, 146, 303, 1173
EarI CTCTTC 4 cut(s) 10, 146, 303, 1173
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 2 cut(s) 637, 691
Eco130I CCWWGG 4 cut(s) 199, 530, 1073, 1328
Eco147I AGGCCT 1 cut(s) 475
Eco24I GRGCYC 3 cut(s) 366, 639, 693
Eco31I GGTCTC 2 cut(s) 246, 326
Eco32I GATATC 1 cut(s) 961
Eco47I GGWCC 2 cut(s) 669, 712
Eco53kI GAGCTC 2 cut(s) 637, 691
Eco81I CCTNAGG 1 cut(s) 444
Eco88I CYCGRG 3 cut(s) 264, 323, 1241
Eco91I GGTNACC 1 cut(s) 860
EcoICRI GAGCTC 2 cut(s) 637, 691
EcoO65I GGTNACC 1 cut(s) 860
EcoRII CCWGG 3 cut(s) 600, 625, 653
EcoRV GATATC 1 cut(s) 961
EcoT14I CCWWGG 4 cut(s) 199, 530, 1073, 1328
EcoT22I ATGCAT 1 cut(s) 1219
EcoT38I GRGCYC 3 cut(s) 366, 639, 693
ErhI CCWWGG 4 cut(s) 199, 530, 1073, 1328
FaqI GGGAC 5 cut(s) 152, 589, 643, 671, 725
FauI CCCGC 1 cut(s) 344
FblI GTMKAC 2 cut(s) 104, 802
Fnu4HI GCNGC 3 cut(s) 115, 467, 1356
FokI GGATG 1 cut(s) 547
FriOI GRGCYC 3 cut(s) 366, 639, 693
Fsp4HI GCNGC 3 cut(s) 115, 467, 1356
FspBI CTAG 7 cut(s) 515, 596, 704, 753, 932, 936, 1074
GluI GCNGC 3 cut(s) 115, 467, 1356
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 4 cut(s) 189, 475, 1184, 1285
HapII CCGG 1 cut(s) 356
HgaI GACGC 1 cut(s) 788
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 2 cut(s) 1042, 1202
HinfI GANTC 6 cut(s) 589, 643, 659, 697, 1019, 1171
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 2 cut(s) 105, 803
Hpy188I TCNGA 9 cut(s) 561, 588, 615, 669, 839, 888, 1031, 1122, 1310
Hpy188III TCNNGA 9 cut(s) 264, 323, 325, 640, 694, 734, 925, 1007, 1175
Hpy8I GTNNAC 2 cut(s) 105, 803
Hpy99I CGWCG 1 cut(s) 1281
HpyAV CCTTC 1 cut(s) 1117
HpyCH4III ACNGT 2 cut(s) 1053, 1390
HpyCH4IV ACGT 1 cut(s) 1276
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 1291
HpyF3I CTNAG 7 cut(s) 444, 450, 486, 591, 645, 699, 1227
HpySE526I ACGT 1 cut(s) 1276
Kzo9I GATC 3 cut(s) 561, 839, 1077
LmnI GCTCC 4 cut(s) 226, 361, 642, 696
Lsp1109I GCAGC 2 cut(s) 101, 1367
LweI GCATC 2 cut(s) 126, 1204
MaeI CTAG 7 cut(s) 515, 596, 704, 753, 932, 936, 1074
MaeII ACGT 1 cut(s) 1276
MaeIII GTNAC 6 cut(s) 124, 344, 722, 860, 1055, 1222
MalI GATC 3 cut(s) 563, 841, 1079
MboI GATC 3 cut(s) 561, 839, 1077
MboII GAAGA 6 cut(s) 27, 57, 112, 133, 320, 1190
MfeI CAATTG 3 cut(s) 30, 183, 288
MhlI GDGCHC 6 cut(s) 366, 500, 543, 620, 639, 693
MlsI TGGCCA 1 cut(s) 1285
MluNI TGGCCA 1 cut(s) 1285
MlyI GAGTC 4 cut(s) 583, 637, 653, 691
MmeI TCCRAC 2 cut(s) 539, 936
Mox20I TGGCCA 1 cut(s) 1285
Mph1103I ATGCAT 1 cut(s) 1219
MroXI GAANNNNTTC 1 cut(s) 882
MscI TGGCCA 1 cut(s) 1285
Msp20I TGGCCA 1 cut(s) 1285
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 3 cut(s) 602, 627, 655
MunI CAATTG 3 cut(s) 30, 183, 288
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 3 cut(s) 602, 627, 655
MvnI CGCG 2 cut(s) 250, 339
MwoI GCNNNNNNNGC 2 cut(s) 472, 1291
NcoI CCATGG 2 cut(s) 199, 1328
NdeII GATC 3 cut(s) 561, 839, 1077
NheI GCTAGC 3 cut(s) 595, 703, 931
NlaIV GGNNCC 2 cut(s) 363, 713
NmuCI GTSAC 2 cut(s) 860, 1222
NsiI ATGCAT 1 cut(s) 1219
NspI RCATGY 2 cut(s) 955, 1221
NspV TTCGAA 1 cut(s) 1159
PaeR7I CTCGAG 3 cut(s) 264, 323, 1241
PagI TCATGA 1 cut(s) 1006
PceI AGGCCT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 796
PctI GAATGC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 2 cut(s) 1019, 1171
PflFI GACNNNGTC 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 355
PkrI GCNGC 3 cut(s) 116, 468, 1357
PleI GAGTC 4 cut(s) 583, 637, 653, 691
PpsI GAGTC 4 cut(s) 583, 637, 653, 691
PshBI ATTAAT 2 cut(s) 833, 881
Psp124BI GAGCTC 2 cut(s) 639, 693
Psp6I CCWGG 3 cut(s) 600, 625, 653
PspEI GGTNACC 1 cut(s) 860
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 3 cut(s) 600, 625, 653
PspN4I GGNNCC 2 cut(s) 363, 713
PspPI GGNCC 3 cut(s) 188, 669, 712
PspXI VCTCGAGB 1 cut(s) 1241
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 2 cut(s) 354, 940
RsaNI GTAC 2 cut(s) 353, 939
SacI GAGCTC 2 cut(s) 639, 693
SalI GTCGAC 1 cut(s) 103
SatI GCNGC 3 cut(s) 115, 467, 1356
Sau3AI GATC 3 cut(s) 561, 839, 1077
Sau96I GGNCC 3 cut(s) 188, 669, 712
SchI GAGTC 4 cut(s) 583, 637, 653, 691
ScrFI CCNGG 3 cut(s) 602, 627, 655
SduI GDGCHC 6 cut(s) 366, 500, 543, 620, 639, 693
SfaNI GCATC 2 cut(s) 126, 1204
Sfr274I CTCGAG 3 cut(s) 264, 323, 1241
SfuI TTCGAA 1 cut(s) 1159
SinI GGWCC 2 cut(s) 669, 712
SlaI CTCGAG 3 cut(s) 264, 323, 1241
SmlI CTYRAG 5 cut(s) 264, 323, 812, 895, 1241
SmoI CTYRAG 5 cut(s) 264, 323, 812, 895, 1241
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 4 cut(s) 224, 337, 466, 1321
SspI AATATT 1 cut(s) 79
SspMI CTAG 7 cut(s) 515, 596, 704, 753, 932, 936, 1074
SstI GAGCTC 2 cut(s) 639, 693
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 3 cut(s) 600, 625, 653
StyI CCWWGG 4 cut(s) 199, 530, 1073, 1328
TaaI ACNGT 2 cut(s) 1053, 1390
TaiI ACGT 1 cut(s) 1279
TatI WGTACW 1 cut(s) 938
TauI GCSGC 1 cut(s) 469
TfiI GAWTC 2 cut(s) 1019, 1171
TscAI CASTG 3 cut(s) 505, 1058, 1231
TseFI GTSAC 2 cut(s) 860, 1222
TseI GCWGC 2 cut(s) 114, 1355
Tsp45I GTSAC 2 cut(s) 860, 1222
TspDTI ATGAA 5 cut(s) 168, 819, 885, 988, 995
TspRI CASTG 3 cut(s) 505, 1058, 1231
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 669, 712
VspI ATTAAT 2 cut(s) 833, 881
XapI RAATTY 3 cut(s) 91, 387, 965
XceI RCATGY 2 cut(s) 955, 1221
XhoI CTCGAG 3 cut(s) 264, 323, 1241
XmaJI CCTAGG 1 cut(s) 1073
XmiI GTMKAC 2 cut(s) 104, 802
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 7 cut(s) 515, 596, 704, 753, 932, 936, 1074
Zsp2I ATGCAT 1 cut(s) 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.