Rh6CG166500

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011564
Physical Location & Seq
Forward (+)
22585009 .. 22586235
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG166500.1

Sequence Viewer

Length: 1227 bp
ATGAGCAACATTGTGCCTGAAAATTCTTTACTGTCGACCAAATGTTGCATCTTTGCAACCCCAAAATTACTCTTGAAAGATAATGAAAAATCTTATTTACCCACGGCATTCGCCATTGGGCCAGTGCACCATGGCAAACCAGACTTGCAGGAGGCAGAGCAAATTAAACTGAAGTATACACGAGACCTCATTGCTCGAGTCTCACAATGGAATGACACGATTGTCAAGGACTTAGTCGAAGAGATTGCAAGTCTTGAGGAACAAGCCCGCCAATACTACGCTGTGCCAGTGAAATTCAATAAAGCAAAGTTTGTAAAACTGTTGTTGGTTGATGGTTGCTTTATCATCGAGCTGTTCCGTAAAAAGCTAGGTGATTCACCTATTTATGAGGCTGACCCAGTATATGGTAGGCCTTTCTTACGTGAGGTATTAGGTACTGACTTGTTATTACTAGAAAACCAAATACCTTGGATGGTTCTCGATCGATTGTTTAGCAGCACAACTCGTACTGGTGCAAGTCCCCTGACTCGAGTAACCTTATTCTTCTTTAGTTTCTTGGGAACAGGAGGGTTAGATCTACAAACGGAAAATAGTTTCATGCCCAGCACTTTAGATCAAAGCAAGCACGTACTTGAGCTGTTAAGAAACTCATTAGTTTGGTCAACTATTCCAGAAGGAGGCGTGCTTGATACATGGGAGCTAATTCCGAGTGCCTCGAGTCTGATGGAAGCAGGTGTTAAATTCAAGAAGGGTAGTACATCGAATGGCTTATTGGATATCAAATTCAGTAATGGGGTACTTGAAATACCACCTTTGGTTATTGTCGAAGCGACAAAAGCTTTCTTCCGAAGCTTGGTTAGCTATGAGCAGTGTTACCATTGGTGCCATCCTAAGATCACTTCTTATGCCATGCTTTTAGATCTTCTCATCAACACTTCAAAAGATATGGATATACTCTGCAAAAACGGAATCATTCAGAATTGGTTGAATCCAGAAGATGCGACCCAGATCTTCAACAACCTTTACAATGATGCAAATGTCAGCCACTTCTATTATCTTGAACTTTGCCGGGAAGTGAACAAGTATTGCAAACGTCGTTGGCCGAGATGGCGAGCAATGTATGTGCGAAATCATTTCAACAGTCCGTGGGCAATCGCTTCTCAAGTTTTGGCAGCTATCATATTTATTCTCACATTGTTGCAAACAGTGTTTAGCATCAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

408

Amino Acids

46.55

Weight (kDa)

7.56

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 17 - 397 3.4e-99 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 722
AasI GACNNNNNNGTC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 882
AccB7I CCANNNNNTGG 1 cut(s) 404
AccI GTMKAC 2 cut(s) 35, 176
AciI CCGC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 1100
AcsI RAATTY 4 cut(s) 22, 293, 740, 782
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 5 cut(s) 436, 508, 630, 757, 798
AfiI CCNNNNNNNGG 3 cut(s) 404, 677, 853
AgsI TTSAA 9 cut(s) 76, 298, 745, 803, 939, 988, 1015, 1061, 1138
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 8 cut(s) 352, 367, 637, 700, 839, 852, 861, 1175
AluI AGCT 8 cut(s) 352, 367, 637, 700, 839, 852, 861, 1175
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 177, 205
Alw44I GTGCAC 1 cut(s) 125
Ama87I CYCGRG 3 cut(s) 195, 528, 715
AoxI GGCC 3 cut(s) 119, 410, 1100
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 495, 1172
ApoI RAATTY 4 cut(s) 22, 293, 740, 782
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 1070
AsuHPI GGTGA 2 cut(s) 369, 383
AvaI CYCGRG 3 cut(s) 195, 528, 715
BaeGI GKGCMC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 882
BauI CACGAG 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 507, 1184
BccI CCATC 5 cut(s) 326, 466, 718, 894, 1101
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BcnI CCSGG 1 cut(s) 1070
BcoDI GTCTC 2 cut(s) 177, 205
BfaI CTAG 2 cut(s) 368, 452
BfuAI ACCTGC 1 cut(s) 722
BglI GCCNNNNNGGC 1 cut(s) 1108
BglII AGATCT 3 cut(s) 574, 919, 1008
BisI GCNGC 2 cut(s) 496, 1173
BlsI GCNGC 2 cut(s) 497, 1174
Bme1390I CCNGG 1 cut(s) 1070
BmeT110I CYCGRG 3 cut(s) 195, 528, 715
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 884
BmrFI CCNGG 1 cut(s) 1070
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 3 cut(s) 57, 988, 1021
BmuI ACTGGG 1 cut(s) 392
BpuEI CTTGAG 3 cut(s) 275, 653, 1146
BpuMI CCSGG 1 cut(s) 1070
Bsa29I ATCGAT 1 cut(s) 484
BsaAI YACGTR 2 cut(s) 422, 628
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 4 cut(s) 102, 130, 467, 1145
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 677, 853
Bse1I ACTGG 4 cut(s) 122, 287, 398, 514
Bse3DI GCAATG 2 cut(s) 189, 1122
BseCI ATCGAT 1 cut(s) 484
BseDI CCNNGG 4 cut(s) 102, 130, 467, 1145
BseGI GGATG 2 cut(s) 477, 886
BseLI CCNNNNNNNGG 3 cut(s) 404, 677, 853
BseMI GCAATG 2 cut(s) 189, 1122
BseNI ACTGG 4 cut(s) 122, 287, 398, 514
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 2 cut(s) 507, 1184
BseYI CCCAGC 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 3 cut(s) 121, 412, 1102
BshNI GGYRCC 1 cut(s) 882
BshVI ATCGAT 1 cut(s) 484
BsiEI CGRYCG 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 3 cut(s) 195, 528, 715
BsiSI CCGG 1 cut(s) 1069
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 3 cut(s) 404, 677, 853
BsmAI GTCTC 2 cut(s) 177, 205
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 3 cut(s) 121, 412, 1102
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 3 cut(s) 195, 528, 715
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 1 cut(s) 268
BspANI GGCC 3 cut(s) 121, 412, 1102
BspDI ATCGAT 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 884
BspMI ACCTGC 1 cut(s) 722
BspT107I GGYRCC 1 cut(s) 882
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 2 cut(s) 189, 1122
BsrI ACTGG 4 cut(s) 122, 287, 398, 514
BssECI CCNNGG 4 cut(s) 102, 130, 467, 1145
BssMI GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
BssNAI GTATAC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 2 cut(s) 130, 467
Bst1107I GTATAC 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 180
Bst4CI ACNGT 4 cut(s) 33, 321, 1142, 1207
Bst6I CTCTTC 1 cut(s) 234
BstBAI YACGTR 2 cut(s) 422, 628
BstC8I GCNNGC 4 cut(s) 268, 623, 683, 1113
BstDEI CTNAG 2 cut(s) 232, 891
BstDSI CCRYGG 3 cut(s) 102, 130, 1145
BstF5I GGATG 2 cut(s) 477, 886
BstKTI GATC 6 cut(s) 484, 577, 616, 897, 922, 1011
BstMAI GTCTC 2 cut(s) 177, 205
BstMBI GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
BstMCI CGRYCG 1 cut(s) 484
BstMWI GCNNNNNNNGC 3 cut(s) 836, 858, 1108
BstSCI CCNGG 1 cut(s) 1068
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 507, 1184
BstX2I RGATCY 3 cut(s) 574, 919, 1008
BstYI RGATCY 3 cut(s) 574, 919, 1008
BstZ17I GTATAC 1 cut(s) 177
Bsu15I ATCGAT 1 cut(s) 484
BsuRI GGCC 3 cut(s) 121, 412, 1102
BsuTUI ATCGAT 1 cut(s) 484
BtgI CCRYGG 3 cut(s) 102, 130, 1145
BtsCI GGATG 2 cut(s) 477, 886
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 4 cut(s) 129, 294, 875, 1212
BveI ACCTGC 1 cut(s) 722
Cac8I GCNNGC 4 cut(s) 268, 623, 683, 1113
Cfr13I GGNCC 1 cut(s) 119
ClaI ATCGAT 1 cut(s) 484
Csp6I GTAC 5 cut(s) 435, 507, 629, 756, 797
CviAII CATG 4 cut(s) 131, 598, 693, 910
CviQI GTAC 5 cut(s) 435, 507, 629, 756, 797
DdeI CTNAG 2 cut(s) 232, 891
DpnI GATC 6 cut(s) 483, 576, 615, 896, 921, 1010
DpnII GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 1100
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 130, 467
Eco147I AGGCCT 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 3 cut(s) 195, 528, 715
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 130, 467
ErhI CCWWGG 2 cut(s) 130, 467
FaeI CATG 4 cut(s) 134, 601, 696, 913
FaqI GGGAC 1 cut(s) 504
FatI CATG 4 cut(s) 130, 597, 692, 909
FauI CCCGC 1 cut(s) 275
FblI GTMKAC 2 cut(s) 35, 176
Fnu4HI GCNGC 2 cut(s) 496, 1173
FokI GGATG 2 cut(s) 484, 873
Fsp4HI GCNGC 2 cut(s) 496, 1173
FspBI CTAG 2 cut(s) 368, 452
GluI GCNGC 2 cut(s) 496, 1173
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 3 cut(s) 121, 412, 1102
HapII CCGG 1 cut(s) 1069
Hin1II CATG 4 cut(s) 134, 601, 696, 913
HincII GTYRAC 2 cut(s) 36, 663
HindII GTYRAC 2 cut(s) 36, 663
HindIII AAGCTT 2 cut(s) 837, 850
HinfI GANTC 6 cut(s) 198, 374, 526, 718, 969, 988
HpaII CCGG 1 cut(s) 1069
HphI GGTGA 2 cut(s) 369, 383
Hpy166II GTNNAC 5 cut(s) 36, 127, 177, 663, 1078
Hpy188I TCNGA 4 cut(s) 708, 723, 848, 978
Hpy188III TCNNGA 8 cut(s) 73, 254, 479, 671, 745, 992, 1058, 1219
Hpy8I GTNNAC 5 cut(s) 36, 127, 177, 663, 1078
Hpy99I CGWCG 1 cut(s) 1098
HpyAV CCTTC 2 cut(s) 668, 742
HpyCH4III ACNGT 4 cut(s) 33, 321, 1142, 1207
HpyCH4IV ACGT 3 cut(s) 421, 627, 1093
HpyF10VI GCNNNNNNNGC 3 cut(s) 836, 858, 1108
HpyF3I CTNAG 2 cut(s) 232, 891
HpySE526I ACGT 3 cut(s) 421, 627, 1093
Hsp92II CATG 4 cut(s) 134, 601, 696, 913
Kzo9I GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 2 cut(s) 507, 1184
LweI GCATC 3 cut(s) 57, 988, 1021
MaeI CTAG 2 cut(s) 368, 452
MaeII ACGT 3 cut(s) 421, 627, 1093
MaeIII GTNAC 2 cut(s) 532, 872
MalI GATC 6 cut(s) 483, 576, 615, 896, 921, 1010
MboI GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
MboII GAAGA 6 cut(s) 251, 535, 835, 914, 1003, 1007
MflI RGATCY 3 cut(s) 574, 919, 1008
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 8 cut(s) 22, 65, 162, 293, 702, 740, 782, 979
MlyI GAGTC 3 cut(s) 207, 520, 727
MnlI CCTC 8 cut(s) 145, 197, 250, 382, 418, 560, 671, 724
MseI TTAA 4 cut(s) 165, 641, 738, 1225
MspI CCGG 1 cut(s) 1069
MspR9I CCNGG 1 cut(s) 1070
Mva1269I GAATGC 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 836, 858, 1108
NciI CCSGG 1 cut(s) 1070
NcoI CCATGG 1 cut(s) 130
NdeII GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
NlaIII CATG 4 cut(s) 134, 601, 696, 913
NlaIV GGNNCC 1 cut(s) 884
NmeAIII GCCGAG 1 cut(s) 1128
PaeR7I CTCGAG 3 cut(s) 195, 528, 715
PaqCI CACCTGC 1 cut(s) 722
PceI AGGCCT 1 cut(s) 412
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 3 cut(s) 374, 969, 988
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 404
PkrI GCNGC 2 cut(s) 497, 1174
Ple19I CGATCG 1 cut(s) 484
PleI GAGTC 3 cut(s) 206, 520, 726
PpsI GAGTC 3 cut(s) 206, 520, 726
Ppu21I YACGTR 2 cut(s) 422, 628
PspFI CCCAGC 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 884
PspPI GGNCC 1 cut(s) 119
PspXI VCTCGAGB 3 cut(s) 195, 528, 715
PsuI RGATCY 3 cut(s) 574, 919, 1008
PsyI GACNNNGTC 1 cut(s) 233
PvuI CGATCG 1 cut(s) 484
RsaI GTAC 5 cut(s) 436, 508, 630, 757, 798
RsaNI GTAC 5 cut(s) 435, 507, 629, 756, 797
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 4 cut(s) 165, 641, 738, 1225
SatI GCNGC 2 cut(s) 496, 1173
Sau3AI GATC 6 cut(s) 481, 574, 613, 894, 919, 1008
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 3 cut(s) 207, 520, 727
ScrFI CCNGG 1 cut(s) 1070
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 3 cut(s) 57, 988, 1021
Sfr274I CTCGAG 3 cut(s) 195, 528, 715
SlaI CTCGAG 3 cut(s) 195, 528, 715
SmlI CTYRAG 6 cut(s) 195, 254, 528, 632, 715, 1161
SmoI CTYRAG 6 cut(s) 195, 254, 528, 632, 715, 1161
Sse9I AATT 8 cut(s) 22, 65, 162, 293, 702, 740, 782, 979
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 1 cut(s) 268
SspMI CTAG 2 cut(s) 368, 452
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 1068
StyI CCWWGG 2 cut(s) 130, 467
TaaI ACNGT 4 cut(s) 33, 321, 1142, 1207
TaiI ACGT 3 cut(s) 424, 630, 1096
TasI AATT 8 cut(s) 22, 65, 162, 293, 702, 740, 782, 979
TatI WGTACW 1 cut(s) 755
TfiI GAWTC 3 cut(s) 374, 969, 988
Tru1I TTAA 4 cut(s) 165, 641, 738, 1225
Tru9I TTAA 4 cut(s) 165, 641, 738, 1225
TscAI CASTG 4 cut(s) 129, 294, 875, 1212
TseI GCWGC 2 cut(s) 495, 1172
TspDTI ATGAA 2 cut(s) 99, 586
TspGWI ACGGA 4 cut(s) 347, 599, 981, 1134
TspRI CASTG 4 cut(s) 129, 294, 875, 1212
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 404
VneI GTGCAC 1 cut(s) 125
XapI RAATTY 4 cut(s) 22, 293, 740, 782
XhoI CTCGAG 3 cut(s) 195, 528, 715
XmiI GTMKAC 2 cut(s) 35, 176
XspI CTAG 2 cut(s) 368, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.