Rh6BG119100

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011564
Physical Location & Seq
Forward (+)
18481826 .. 18486892
5067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG119100.1

Sequence Viewer

Length: 330 bp
ATGGAAACCAACGATTTTGTGCAGGACTTGGTCGAAGAGCTTGCAGGTCTCGAGAAAGAAGCACGCGAATGTTACTCTGTAGCGGTGGAGCCTACAAGAGATGAGTTTATTAAAATTTTGTTAGTTGATGGTTGCTTTCTCATCGAGCTATTCCTTAAATCACATTTCCCTGAGGATGACCCCGTGTTGAGTAGGCCTTTCTTAACTGAGGTATTGGCCACTGACTTGTTATTACTAGAAAACCAAATACCTTGGATAGTGCTCGATAAATTGTTTAGTCGGATCATGGCTGCTGGGACAGAGCTTCTGATCAGATTTTACTATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

109

Amino Acids

12.61

Weight (kDa)

4.27

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 7 - 94 5.6e-26 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 114
AluBI AGCT 3 cut(s) 40, 148, 304
AluI AGCT 3 cut(s) 40, 148, 304
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 2 cut(s) 194, 216
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 171
BalI TGGCCA 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 2 cut(s) 78, 322
BfuAI ACCTGC 1 cut(s) 35
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 251
Bse21I CCTNAGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 162, 198
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 196, 218
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 2 cut(s) 196, 218
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 282, 309
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 196, 218
BspCNI CTCAG 2 cut(s) 163, 199
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 2 cut(s) 282, 309
BssT1I CCWWGG 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 42, 64
BstDEI CTNAG 2 cut(s) 171, 207
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 2 cut(s) 285, 312
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 282, 309
BstSFI CTRYAG 2 cut(s) 78, 322
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 277
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 196, 218
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 2 cut(s) 42, 64
CviAII CATG 1 cut(s) 286
CviJI RGCY 7 cut(s) 40, 91, 148, 196, 218, 290, 304
CviKI_1 RGCY 7 cut(s) 40, 91, 148, 196, 218, 290, 304
DdeI CTNAG 2 cut(s) 171, 207
DpnI GATC 2 cut(s) 284, 311
DpnII GATC 2 cut(s) 282, 309
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 251
Eco147I AGGCCT 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 53
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 289
FaiI YATR 2 cut(s) 287, 324
FaqI GGGAC 1 cut(s) 310
FatI CATG 1 cut(s) 285
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 236
GluI GCNGC 1 cut(s) 291
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 2 cut(s) 196, 218
Hin1II CATG 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 282, 309, 314
Hpy188III TCNNGA 2 cut(s) 50, 52
HpyCH4V TGCA 2 cut(s) 22, 44
HpyF3I CTNAG 2 cut(s) 171, 207
Hsp92II CATG 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 2 cut(s) 282, 309
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 8, 30, 183, 279
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 284, 311
MboI GATC 2 cut(s) 282, 309
MboII GAAGA 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 2 cut(s) 114, 269
MluNI TGGCCA 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 2 cut(s) 166, 202
Mox20I TGGCCA 1 cut(s) 218
MscI TGGCCA 1 cut(s) 218
MseI TTAA 4 cut(s) 111, 156, 203, 328
MslI CAYNNNNRTG 1 cut(s) 67
Msp20I TGGCCA 1 cut(s) 218
MvnI CGCG 1 cut(s) 66
NdeII GATC 2 cut(s) 282, 309
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 50
PceI AGGCCT 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 90
PsyI GACNNNGTC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 4 cut(s) 111, 156, 203, 328
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 282, 309
SduI GDGCHC 1 cut(s) 264
SetI ASST 6 cut(s) 42, 49, 150, 213, 253, 306
SfcI CTRYAG 2 cut(s) 78, 322
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 114, 269
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 236
StuI AGGCCT 1 cut(s) 196
StyI CCWWGG 1 cut(s) 251
TaqI TCGA 4 cut(s) 33, 51, 144, 264
TasI AATT 2 cut(s) 114, 269
Tru1I TTAA 4 cut(s) 111, 156, 203, 328
Tru9I TTAA 4 cut(s) 111, 156, 203, 328
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 290
TspRI CASTG 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 29
XapI RAATTY 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.