Rh6CG117300

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011564
Physical Location & Seq
Forward (+)
13628549 .. 13629274
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG117300.1

Sequence Viewer

Length: 726 bp
ATGACAGAGCTCCTGACTCAGCTAGCTTGGGACTATTTTGGTGACTTTATTCAGGAAAAACAAAATATAGCCATCACTTTGTTAAACACTCCCCAGCACAGTTTGGGACGAAGCAAGCGTCTACATCTACTTGAGCTATTGAGAAGTTCATTAATTGGATCAACTACGACAGGAGGAGGTGACCTTAATAAATGGGAATTAATTCCGAGTGCCTCAAGTTTAATAGAAGCTGGAGTGAAAATCAGGAAGCTAGCTAGTACAGATGGTGGCATGTTGGATATCAAATTTAGTAATGGGATACTCGAAATACCACCTTTCATTATTCATGAGGCAACTGAATCTTTATTCCGAAACATGATAAGCTTTGAACAGTGTTACTACAGCTGTGAGCATAGGATCACTTGTTATGCGATGCTGTTAGATGTACTCATCAACACTCCGAAGGACATGGATATACTTGTCAAAAATGGAATTATTCGAAACTGGTTGAATCCAGAAGAGGCCACCCAGATCTTCAACAAGCTTTATTATGATGCATGTGTCACTAAGTTCTATTACCTCGAGCTTTGCAAGGAAGTGAACAAGTATTGCAAACGTCGTTGGCCAAGATGGCGAGCAATCTATGTCAGAAATCATTTGAGCAGTCCATGGGCAATCGCTTCACAAGTGTTAGCAGCTATCATATTTGTTCTTGCATTATTGCAAACAGTTTTCAGCATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

241

Amino Acids

27.69

Weight (kDa)

8.17

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 9 - 231 3.3e-54 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 121
AclWI GGATC 2 cut(s) 166, 404
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 2 cut(s) 259, 426
AgsI TTSAA 3 cut(s) 368, 490, 517
Alw21I GWGCWC 1 cut(s) 12
AlwI GGATC 2 cut(s) 166, 404
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 2 cut(s) 501, 602
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AseI ATTAAT 2 cut(s) 152, 200
Asp700I GAANNNNTTC 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 53, 191
AsuII TTCGAA 1 cut(s) 478
AsuNHI GCTAGC 2 cut(s) 22, 250
AvaI CYCGRG 1 cut(s) 560
BalI TGGCCA 1 cut(s) 604
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 686
BccI CCATC 3 cut(s) 80, 257, 603
BciVI GTATCC 1 cut(s) 291
BfaI CTAG 3 cut(s) 23, 251, 255
BfmI CTRYAG 1 cut(s) 379
BfuI GTATCC 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 610
BglII AGATCT 1 cut(s) 510
BisI GCNGC 1 cut(s) 675
BlsI GCNGC 1 cut(s) 676
BmeT110I CYCGRG 1 cut(s) 560
BmsI GCATC 2 cut(s) 402, 523
BmtI GCTAGC 2 cut(s) 26, 254
BpmI CTGGAG 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 478
BpuEI CTTGAG 2 cut(s) 152, 199
BsaJI CCNNGG 1 cut(s) 647
Bse1I ACTGG 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 647
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 686
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 503, 604
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 560
BslFI GGGAC 2 cut(s) 44, 120
BsmFI GGGAC 2 cut(s) 44, 120
BsnI GGCC 2 cut(s) 503, 604
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 158, 396, 510
Bsp19I CCATGG 1 cut(s) 647
BspANI GGCC 2 cut(s) 503, 604
BspCNI CTCAG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 325
BspOI GCTAGC 2 cut(s) 26, 254
BspPI GGATC 2 cut(s) 166, 404
BspT104I TTCGAA 1 cut(s) 478
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 1 cut(s) 647
BssMI GATC 3 cut(s) 158, 396, 510
BssT1I CCWWGG 1 cut(s) 647
Bst4CI ACNGT 3 cut(s) 101, 372, 709
Bst6I CTCTTC 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 478
BstC8I GCNNGC 4 cut(s) 24, 116, 252, 615
BstDEI CTNAG 2 cut(s) 18, 546
BstDSI CCRYGG 1 cut(s) 647
BstEII GGTNACC 1 cut(s) 179
BstKTI GATC 3 cut(s) 161, 399, 513
BstMBI GATC 3 cut(s) 158, 396, 510
BstMWI GCNNNNNNNGC 1 cut(s) 610
BstNSI RCATGY 2 cut(s) 274, 540
BstPI GGTNACC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 1 cut(s) 686
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BsuI GTATCC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 503, 604
BtgI CCRYGG 1 cut(s) 647
BtgZI GCGATG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 4 cut(s) 24, 116, 252, 615
CciI TCATGA 1 cut(s) 325
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 258, 425
CviAII CATG 6 cut(s) 271, 326, 355, 448, 537, 648
CviQI GTAC 2 cut(s) 258, 425
DdeI CTNAG 2 cut(s) 18, 546
DpnI GATC 3 cut(s) 160, 398, 512
DpnII GATC 3 cut(s) 158, 396, 510
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 12
Eco32I GATATC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 560
Eco91I GGTNACC 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 10
EcoO65I GGTNACC 1 cut(s) 179
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 647
EcoT22I ATGCAT 1 cut(s) 538
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 6 cut(s) 274, 329, 358, 451, 540, 651
FaqI GGGAC 2 cut(s) 44, 120
FatI CATG 6 cut(s) 270, 325, 354, 447, 536, 647
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 675
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 675
FspBI CTAG 3 cut(s) 23, 251, 255
GluI GCNGC 1 cut(s) 675
GsaI CCCAGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 2 cut(s) 503, 604
HgaI GACGC 1 cut(s) 107
Hin1II CATG 6 cut(s) 274, 329, 358, 451, 540, 651
HindIII AAGCTT 2 cut(s) 361, 521
HinfI GANTC 3 cut(s) 16, 338, 490
HphI GGTGA 2 cut(s) 53, 191
Hpy166II GTNNAC 2 cut(s) 122, 580
Hpy188I TCNGA 4 cut(s) 207, 350, 441, 629
Hpy188III TCNNGA 5 cut(s) 13, 53, 244, 326, 494
Hpy8I GTNNAC 2 cut(s) 122, 580
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 3 cut(s) 101, 372, 709
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 5 cut(s) 536, 570, 591, 695, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 610
HpyF3I CTNAG 2 cut(s) 18, 546
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 6 cut(s) 274, 329, 358, 451, 540, 651
Kzo9I GATC 3 cut(s) 158, 396, 510
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 9 cut(s) 26, 38, 107, 156, 216, 229, 469, 507, 521
Lsp1109I GCAGC 1 cut(s) 686
LweI GCATC 2 cut(s) 402, 523
MaeI CTAG 3 cut(s) 23, 251, 255
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 4 cut(s) 41, 179, 374, 541
MalI GATC 3 cut(s) 160, 398, 512
MboI GATC 3 cut(s) 158, 396, 510
MboII GAAGA 2 cut(s) 505, 509
MflI RGATCY 1 cut(s) 510
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 604
MluCI AATT 5 cut(s) 153, 197, 201, 284, 471
MluNI TGGCCA 1 cut(s) 604
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 6 cut(s) 167, 170, 223, 322, 493, 569
Mox20I TGGCCA 1 cut(s) 604
Mph1103I ATGCAT 1 cut(s) 538
MroXI GAANNNNTTC 1 cut(s) 201
MscI TGGCCA 1 cut(s) 604
MseI TTAA 6 cut(s) 83, 152, 186, 200, 221, 724
Msp20I TGGCCA 1 cut(s) 604
MspA1I CMGCKG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 610
NcoI CCATGG 1 cut(s) 647
NdeII GATC 3 cut(s) 158, 396, 510
NheI GCTAGC 2 cut(s) 22, 250
NlaIII CATG 6 cut(s) 274, 329, 358, 451, 540, 651
NmuCI GTSAC 3 cut(s) 41, 179, 541
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 2 cut(s) 274, 540
NspV TTCGAA 1 cut(s) 478
PaeR7I CTCGAG 1 cut(s) 560
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 338, 490
PkrI GCNGC 1 cut(s) 676
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PshBI ATTAAT 2 cut(s) 152, 200
Psp124BI GAGCTC 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 93
PspXI VCTCGAGB 1 cut(s) 560
PsuI RGATCY 1 cut(s) 510
PvuII CAGCTG 1 cut(s) 384
RsaI GTAC 2 cut(s) 259, 426
RsaNI GTAC 2 cut(s) 258, 425
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 6 cut(s) 83, 152, 186, 200, 221, 724
SatI GCNGC 1 cut(s) 675
Sau3AI GATC 3 cut(s) 158, 396, 510
SchI GAGTC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 2 cut(s) 402, 523
SfcI CTRYAG 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 560
SfuI TTCGAA 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 560
SmlI CTYRAG 3 cut(s) 131, 214, 560
SmoI CTYRAG 3 cut(s) 131, 214, 560
Sse9I AATT 5 cut(s) 153, 197, 201, 284, 471
SspMI CTAG 3 cut(s) 23, 251, 255
SstI GAGCTC 1 cut(s) 12
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 3 cut(s) 101, 372, 709
TaiI ACGT 1 cut(s) 598
TaqI TCGA 3 cut(s) 303, 478, 561
TasI AATT 5 cut(s) 153, 197, 201, 284, 471
TatI WGTACW 2 cut(s) 257, 424
TfiI GAWTC 2 cut(s) 338, 490
Tru1I TTAA 6 cut(s) 83, 152, 186, 200, 221, 724
Tru9I TTAA 6 cut(s) 83, 152, 186, 200, 221, 724
TscAI CASTG 1 cut(s) 377
TseFI GTSAC 3 cut(s) 41, 179, 541
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 3 cut(s) 41, 179, 541
TspDTI ATGAA 3 cut(s) 138, 307, 314
TspRI CASTG 1 cut(s) 377
VspI ATTAAT 2 cut(s) 152, 200
XapI RAATTY 1 cut(s) 284
XceI RCATGY 2 cut(s) 274, 540
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 3 cut(s) 23, 251, 255
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.