Rh7AG259900

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011564
Physical Location & Seq
Forward (+)
26508337 .. 26512644
4308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG259900.1

Sequence Viewer

Length: 1509 bp
ATGGAAGGTCTTGGTAGAGATGATAGCGCTAATGATTTTGGTCCTATTGAAATGAGCAGTTTCGGATCTTCCACAGGAACTAATGTTGATACTGCAGCTGCACCACATGAGAGTAGTTTTCGATCTTTCATGGGAAATAATATTGATGTTGCAGCTGCATCAGACGAAAGTAATTTTGGATCTTCTATGGAAAACATTGATATTGGATTTGCGGAAAGTGATTTGAGATCTTCACTGGATAGTATTGTTTTTGAAAACTCCCTCTTGTCAACCAAATGTTCCATCTTCGAAACCCCCAGAATACTCTTTAGAACTAATGAGAAAACTTATGTCCCCACTGCATTCTCGATCGGGCCTTTACACCATGGCAAACCAGGATTGACAGCCACAGAGCAAATTAAACTGAAATATACGCAAGACCTCATCAGTCGAGTCTCACAAACAAAGGGCACGGTTTTGAAAGACATGGTAAAATGGATTGCATGTATTGAGGAAGAAGCCCGCCAATGTTATGCTGTACCAGTTGAATTCACTAGAGATGAGTTTATCAAAATCTTGTTAGTTGATGGTTGCTTTCTCATCGAGCTATTCCGTAAATACGGAGGTCTTGATTCATCGACTTCAGCGAATGACCCCGTGATGAATAGGGCTTGTATGCTCGAGGTTGTAGATCGTGACTTGTTCTTGTTAGAAAACCAAATACCTTGGATGGTGCTTCATCGTTTGTTTAGCTTGACTTCTTCTGATGACGATATTCTTTTCTTTCGTTCTCCACAGCCAATATCGTCTGTTAATGTCCTGACTCGACTAACTTTGAGGTTCTTTCGAATTTTTGGGACAAGAGGATTAGATTCATCAATGGAAACTAGCTTGTTGCGAAGCACTCATTATAACGAAACTAAACATGTACTAGATCTGTTGAGATCTTCGTTAATTGGGTCAACGTTGCAATTAGAAAGCGGAAATAGGGAAAGATGGGAACTAATTCCAAGTGCCTCAAGCCTGATAGAAGCTGGAGTGAAATTCAAGAAGGGTAGTACGGATTATGGCATGTTGGACATCAAATTCAGTAATGGGGTACTCGAAATACCACCTTTCATAATTCACGAGTCAACTGAAGCTTTGTTCCGAAACATGATCAGCTTCGAGCAGTGTTACCATCTGTGCGATCCTAGGATCACAAATTATGCAATGCTACTAGATATACTCATCAACACTCCGAAAGACATTGATATACTCTGCAAATATGGAATCATTAAGAATTGGTTGAATCCAGAAAAGGCATCCCAGATCTTTGACAATCTTTACAGTGATACATATGTCACCGAGTTCTACTACCTAGAGCTTTCCCAGGAAGTTAACAAGTATTGCAAGCGTCGTTGGCCAAGATGGCGAGCAATGTATGTTCGAAATCATTTCAGCAGTCCATGGGCAATTGCCTCGCAAATGTTGGCAGCTATCATATTTATCCTTGCATTATTGCAAACAGTGTTCACTATCAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

502

Amino Acids

57.04

Weight (kDa)

5.37

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 95 - 491 3.1e-105 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
AciI CCGC 3 cut(s) 212, 502, 960
AclI AACGTT 1 cut(s) 944
AclWI GGATC 4 cut(s) 73, 187, 1163, 1184
AcoI YGGCCR 1 cut(s) 1382
AcsI RAATTY 4 cut(s) 527, 828, 1022, 1064
AcuI CTGAAG 2 cut(s) 606, 1137
AfaI GTAC 4 cut(s) 519, 909, 1039, 1080
AfeI AGCGCT 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 904
AgsI TTSAA 6 cut(s) 50, 254, 460, 527, 1027, 1270
AjnI CCWGG 2 cut(s) 373, 1350
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 4 cut(s) 73, 187, 1163, 1184
Ama87I CYCGRG 1 cut(s) 659
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 2 cut(s) 353, 1382
ApeKI GCWGC 5 cut(s) 95, 98, 152, 155, 1454
ApoI RAATTY 4 cut(s) 527, 828, 1022, 1064
Asp700I GAANNNNTTC 1 cut(s) 984
AspA2I CCTAGG 1 cut(s) 1172
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 41, 353
AsuHPI GGTGA 1 cut(s) 1315
AsuII TTCGAA 3 cut(s) 288, 826, 1408
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 1 cut(s) 41
AvrII CCTAGG 1 cut(s) 1172
BaeGI GKGCMC 1 cut(s) 452
BaeI ACNNNNGTAYC 2 cut(s) 1305, 1338
BalI TGGCCA 1 cut(s) 1384
BauI CACGAG 1 cut(s) 1106
BbvI GCAGC 5 cut(s) 85, 107, 142, 164, 1466
BccI CCATC 6 cut(s) 290, 560, 703, 969, 1167, 1383
BcgI CGANNNNNNTGC 2 cut(s) 1422, 1456
BciT130I CCWGG 2 cut(s) 375, 1352
BclI TGATCA 1 cut(s) 1137
BcoDI GTCTC 1 cut(s) 439
BfaI CTAG 6 cut(s) 534, 867, 911, 1173, 1199, 1340
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 1390
BglII AGATCT 4 cut(s) 227, 913, 923, 1290
BisI GCNGC 5 cut(s) 96, 99, 153, 156, 1455
BlnI CCTAGG 1 cut(s) 1172
BlsI GCNGC 5 cut(s) 97, 100, 154, 157, 1456
Bme1390I CCNGG 2 cut(s) 375, 1352
Bme18I GGWCC 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 41, 353
BmrFI CCNGG 2 cut(s) 375, 1352
BmsI GCATC 2 cut(s) 167, 1292
BpmI CTGGAG 1 cut(s) 1035
Bpu14I TTCGAA 3 cut(s) 288, 826, 1408
BpuEI CTTGAG 1 cut(s) 982
BsaJI CCNNGG 5 cut(s) 364, 704, 1172, 1350, 1427
Bse1I ACTGG 2 cut(s) 240, 521
Bse3DI GCAATG 2 cut(s) 1197, 1404
BseBI CCWGG 2 cut(s) 375, 1352
BseDI CCNNGG 5 cut(s) 364, 704, 1172, 1350, 1427
BseGI GGATG 2 cut(s) 714, 1283
BseMI GCAATG 2 cut(s) 1197, 1404
BseNI ACTGG 2 cut(s) 240, 521
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 5 cut(s) 85, 107, 142, 164, 1466
BsgI GTGCAG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 355, 1384
BsiEI CGRYCG 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 659
BslFI GGGAC 2 cut(s) 317, 850
BsmAI GTCTC 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 317, 850
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 2 cut(s) 355, 1384
BsoBI CYCGRG 1 cut(s) 659
Bsp119I TTCGAA 3 cut(s) 288, 826, 1408
Bsp1286I GDGCHC 1 cut(s) 452
Bsp19I CCATGG 2 cut(s) 364, 1427
BspACI CCGC 3 cut(s) 212, 502, 960
BspANI GGCC 2 cut(s) 355, 1384
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 4 cut(s) 73, 187, 1163, 1184
BspT104I TTCGAA 3 cut(s) 288, 826, 1408
BsrDI GCAATG 2 cut(s) 1197, 1404
BsrI ACTGG 2 cut(s) 240, 521
BssECI CCNNGG 5 cut(s) 364, 704, 1172, 1350, 1427
BssSI CACGAG 1 cut(s) 1106
BssT1I CCWWGG 4 cut(s) 364, 704, 1172, 1427
Bst2BI CACGAG 1 cut(s) 1106
Bst2UI CCWGG 2 cut(s) 375, 1352
Bst4CI ACNGT 3 cut(s) 454, 1310, 1489
BstBI TTCGAA 3 cut(s) 288, 826, 1408
BstC8I GCNNGC 3 cut(s) 502, 1373, 1395
BstDSI CCRYGG 2 cut(s) 364, 1427
BstF5I GGATG 2 cut(s) 714, 1283
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 439
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 1381, 1390
BstNI CCWGG 2 cut(s) 375, 1352
BstNSI RCATGY 3 cut(s) 486, 908, 1054
BstSCI CCNGG 2 cut(s) 373, 1350
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 5 cut(s) 85, 107, 142, 164, 1466
BstX2I RGATCY 6 cut(s) 65, 179, 227, 913, 923, 1290
BstYI RGATCY 6 cut(s) 65, 179, 227, 913, 923, 1290
BsuRI GGCC 2 cut(s) 355, 1384
BtgI CCRYGG 2 cut(s) 364, 1427
BtsCI GGATG 2 cut(s) 714, 1283
BtsI GCAGTG 2 cut(s) 336, 1157
BtsIMutI CAGTG 5 cut(s) 233, 336, 1157, 1315, 1494
Cac8I GCNNGC 3 cut(s) 502, 1373, 1395
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 41, 353
CseI GACGC 1 cut(s) 1364
Csp6I GTAC 4 cut(s) 518, 908, 1038, 1079
CviAII CATG 9 cut(s) 107, 130, 365, 466, 483, 905, 1051, 1135, 1428
CviQI GTAC 4 cut(s) 518, 908, 1038, 1079
EaeI YGGCCR 1 cut(s) 1382
Eco130I CCWWGG 4 cut(s) 364, 704, 1172, 1427
Eco47I GGWCC 1 cut(s) 41
Eco47III AGCGCT 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 606, 1137
Eco88I CYCGRG 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 373, 1350
EcoT14I CCWWGG 4 cut(s) 364, 704, 1172, 1427
ErhI CCWWGG 4 cut(s) 364, 704, 1172, 1427
FaeI CATG 9 cut(s) 110, 133, 368, 469, 486, 908, 1054, 1138, 1431
FaqI GGGAC 2 cut(s) 317, 850
FatI CATG 9 cut(s) 106, 129, 364, 465, 482, 904, 1050, 1134, 1427
FauI CCCGC 1 cut(s) 509
FauNDI CATATG 1 cut(s) 1318
FbaI TGATCA 1 cut(s) 1137
Fnu4HI GCNGC 5 cut(s) 96, 99, 153, 156, 1455
FokI GGATG 2 cut(s) 721, 1270
Fsp4HI GCNGC 5 cut(s) 96, 99, 153, 156, 1455
FspBI CTAG 6 cut(s) 534, 867, 911, 1173, 1199, 1340
GlaI GCGC 1 cut(s) 28
GluI GCNGC 5 cut(s) 96, 99, 153, 156, 1455
GsuI CTGGAG 1 cut(s) 1035
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 2 cut(s) 355, 1384
HgaI GACGC 1 cut(s) 1364
HhaI GCGC 1 cut(s) 29
Hin1II CATG 9 cut(s) 110, 133, 368, 469, 486, 908, 1054, 1138, 1431
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 4 cut(s) 270, 942, 1113, 1360
HindII GTYRAC 4 cut(s) 270, 942, 1113, 1360
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 7 cut(s) 432, 611, 802, 851, 1109, 1251, 1270
HpaI GTTAAC 1 cut(s) 1360
HphI GGTGA 1 cut(s) 1315
Hpy166II GTNNAC 5 cut(s) 270, 942, 1113, 1360, 1494
Hpy188I TCNGA 5 cut(s) 65, 163, 745, 1130, 1221
Hpy188III TCNNGA 8 cut(s) 346, 608, 674, 799, 1027, 1106, 1274, 1501
Hpy8I GTNNAC 5 cut(s) 270, 942, 1113, 1360, 1494
Hpy99I CGWCG 1 cut(s) 1380
HpyAV CCTTC 1 cut(s) 1024
HpyCH4III ACNGT 3 cut(s) 454, 1310, 1489
HpyCH4IV ACGT 1 cut(s) 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 1381, 1390
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 9 cut(s) 110, 133, 368, 469, 486, 908, 1054, 1138, 1431
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 1137
KspAI GTTAAC 1 cut(s) 1360
Lsp1109I GCAGC 5 cut(s) 85, 107, 142, 164, 1466
LweI GCATC 2 cut(s) 167, 1292
MaeI CTAG 6 cut(s) 534, 867, 911, 1173, 1199, 1340
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 3 cut(s) 674, 1154, 1321
MboII GAAGA 7 cut(s) 60, 174, 222, 277, 506, 732, 918
MfeI CAATTG 1 cut(s) 1434
MflI RGATCY 6 cut(s) 65, 179, 227, 913, 923, 1290
MhlI GDGCHC 1 cut(s) 452
MlsI TGGCCA 1 cut(s) 1384
MluNI TGGCCA 1 cut(s) 1384
MlyI GAGTC 3 cut(s) 441, 796, 1118
MmeI TCCRAC 1 cut(s) 1035
MnlI CCTC 9 cut(s) 272, 431, 484, 596, 655, 810, 836, 1006, 1450
Mox20I TGGCCA 1 cut(s) 1384
MroXI GAANNNNTTC 1 cut(s) 984
MscI TGGCCA 1 cut(s) 1384
MseI TTAA 5 cut(s) 399, 792, 932, 1257, 1359
Msp20I TGGCCA 1 cut(s) 1384
MspA1I CMGCKG 2 cut(s) 98, 155
MspR9I CCNGG 2 cut(s) 375, 1352
MunI CAATTG 1 cut(s) 1434
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 2 cut(s) 375, 1352
MwoI GCNNNNNNNGC 2 cut(s) 1381, 1390
NcoI CCATGG 2 cut(s) 364, 1427
NdeI CATATG 1 cut(s) 1318
NlaIII CATG 9 cut(s) 110, 133, 368, 469, 486, 908, 1054, 1138, 1431
NmuCI GTSAC 2 cut(s) 674, 1321
NspI RCATGY 3 cut(s) 486, 908, 1054
NspV TTCGAA 3 cut(s) 288, 826, 1408
PaeR7I CTCGAG 1 cut(s) 659
PciI ACATGT 1 cut(s) 904
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PctI GAATGC 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 4 cut(s) 611, 851, 1251, 1270
PkrI GCNGC 5 cut(s) 97, 100, 154, 157, 1456
Ple19I CGATCG 1 cut(s) 351
PleI GAGTC 3 cut(s) 440, 796, 1117
PpsI GAGTC 3 cut(s) 440, 796, 1117
PscI ACATGT 1 cut(s) 904
PsiI TTATAA 1 cut(s) 891
Psp1406I AACGTT 1 cut(s) 944
Psp6I CCWGG 2 cut(s) 373, 1350
PspGI CCWGG 2 cut(s) 373, 1350
PspPI GGNCC 2 cut(s) 41, 353
PspXI VCTCGAGB 1 cut(s) 659
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 6 cut(s) 65, 179, 227, 913, 923, 1290
PvuI CGATCG 1 cut(s) 351
PvuII CAGCTG 2 cut(s) 98, 155
RsaI GTAC 4 cut(s) 519, 909, 1039, 1080
RsaNI GTAC 4 cut(s) 518, 908, 1038, 1079
SaqAI TTAA 5 cut(s) 399, 792, 932, 1257, 1359
SatI GCNGC 5 cut(s) 96, 99, 153, 156, 1455
Sau96I GGNCC 2 cut(s) 41, 353
SchI GAGTC 3 cut(s) 441, 796, 1118
ScrFI CCNGG 2 cut(s) 375, 1352
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 2 cut(s) 167, 1292
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 659
SfuI TTCGAA 3 cut(s) 288, 826, 1408
SinI GGWCC 1 cut(s) 41
SlaI CTCGAG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 659, 997
SmoI CTYRAG 2 cut(s) 659, 997
SsiI CCGC 3 cut(s) 212, 502, 960
SspI AATATT 1 cut(s) 142
SspMI CTAG 6 cut(s) 534, 867, 911, 1173, 1199, 1340
StyD4I CCNGG 2 cut(s) 373, 1350
StyI CCWWGG 4 cut(s) 364, 704, 1172, 1427
TaaI ACNGT 3 cut(s) 454, 1310, 1489
TaiI ACGT 1 cut(s) 947
TatI WGTACW 1 cut(s) 907
TfiI GAWTC 4 cut(s) 611, 851, 1251, 1270
Tru1I TTAA 5 cut(s) 399, 792, 932, 1257, 1359
Tru9I TTAA 5 cut(s) 399, 792, 932, 1257, 1359
TscAI CASTG 5 cut(s) 240, 343, 1157, 1315, 1494
TseFI GTSAC 2 cut(s) 674, 1321
TseI GCWGC 5 cut(s) 95, 98, 152, 155, 1454
Tsp45I GTSAC 2 cut(s) 674, 1321
TspDTI ATGAA 6 cut(s) 118, 603, 656, 707, 843, 1087
TspGWI ACGGA 3 cut(s) 581, 615, 1055
TspRI CASTG 5 cut(s) 240, 343, 1157, 1315, 1494
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 4 cut(s) 527, 828, 1022, 1064
XceI RCATGY 3 cut(s) 486, 908, 1054
XhoI CTCGAG 1 cut(s) 659
XmaJI CCTAGG 1 cut(s) 1172
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 6 cut(s) 534, 867, 911, 1173, 1199, 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.